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Items: 31

1.

Fern genomes elucidate land plant evolution and cyanobacterial symbioses.

Li FW, Brouwer P, Carretero-Paulet L, Cheng S, de Vries J, Delaux PM, Eily A, Koppers N, Kuo LY, Li Z, Simenc M, Small I, Wafula E, Angarita S, Barker MS, Bräutigam A, dePamphilis C, Gould S, Hosmani PS, Huang YM, Huettel B, Kato Y, Liu X, Maere S, McDowell R, Mueller LA, Nierop KGJ, Rensing SA, Robison T, Rothfels CJ, Sigel EM, Song Y, Timilsena PR, Van de Peer Y, Wang H, Wilhelmsson PKI, Wolf PG, Xu X, Der JP, Schluepmann H, Wong GK, Pryer KM.

Nat Plants. 2018 Jul;4(7):460-472. doi: 10.1038/s41477-018-0188-8. Epub 2018 Jul 2.

PMID:
29967517
2.

The Apicomplexa-specific glucosamine-6-phosphate N-acetyltransferase gene family encodes a key enzyme for glycoconjugate synthesis with potential as therapeutic target.

Cova M, López-Gutiérrez B, Artigas-Jerónimo S, González-Díaz A, Bandini G, Maere S, Carretero-Paulet L, Izquierdo L.

Sci Rep. 2018 Mar 5;8(1):4005. doi: 10.1038/s41598-018-22441-3.

3.

Reciprocally Retained Genes in the Angiosperm Lineage Show the Hallmarks of Dosage Balance Sensitivity.

Tasdighian S, Van Bel M, Li Z, Van de Peer Y, Carretero-Paulet L, Maere S.

Plant Cell. 2017 Nov;29(11):2766-2785. doi: 10.1105/tpc.17.00313. Epub 2017 Oct 23.

4.

Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory.

Fukushima K, Fang X, Alvarez-Ponce D, Cai H, Carretero-Paulet L, Chen C, Chang TH, Farr KM, Fujita T, Hiwatashi Y, Hoshi Y, Imai T, Kasahara M, Librado P, Mao L, Mori H, Nishiyama T, Nozawa M, Pálfalvi G, Pollard ST, Rozas J, Sánchez-Gracia A, Sankoff D, Shibata TF, Shigenobu S, Sumikawa N, Uzawa T, Xie M, Zheng C, Pollock DD, Albert VA, Li S, Hasebe M.

Nat Ecol Evol. 2017 Feb 6;1(3):59. doi: 10.1038/s41559-016-0059.

PMID:
28812732
5.

Studying Evolutionary Dynamics of Gene Families Encoding SUMO-Activating Enzymes with SeaView and ProtTest.

Carretero-Paulet L, Albert VA.

Methods Mol Biol. 2016;1450:273-84. doi: 10.1007/978-1-4939-3759-2_22.

PMID:
27424762
6.

Sequence Search and Comparative Genomic Analysis of SUMO-Activating Enzymes Using CoGe.

Carretero-Paulet L, Albert VA.

Methods Mol Biol. 2016;1450:261-72. doi: 10.1007/978-1-4939-3759-2_21.

PMID:
27424761
7.

Novel CK2α and CK2β subunits in maize reveal functional diversification in subcellular localization and interaction capacity.

Vélez-Bermúdez IC, Carretero-Paulet L, Legnaioli T, Ludevid D, Pagès M, Riera M.

Plant Sci. 2015 Jun;235:58-69. doi: 10.1016/j.plantsci.2015.03.005. Epub 2015 Mar 14.

PMID:
25900566
8.

Transcriptomic signatures in seeds of apple (Malus domestica L. Borkh) during fruitlet abscission.

Ferrero S, Carretero-Paulet L, Mendes MA, Botton A, Eccher G, Masiero S, Colombo L.

PLoS One. 2015 Mar 17;10(3):e0120503. doi: 10.1371/journal.pone.0120503. eCollection 2015.

9.

High Gene Family Turnover Rates and Gene Space Adaptation in the Compact Genome of the Carnivorous Plant Utricularia gibba.

Carretero-Paulet L, Librado P, Chang TH, Ibarra-Laclette E, Herrera-Estrella L, Rozas J, Albert VA.

Mol Biol Evol. 2015 May;32(5):1284-95. doi: 10.1093/molbev/msv020. Epub 2015 Jan 31.

PMID:
25637935
10.

Genome-wide analysis of adaptive molecular evolution in the carnivorous plant Utricularia gibba.

Carretero-Paulet L, Chang TH, Librado P, Ibarra-Laclette E, Herrera-Estrella L, Rozas J, Albert VA.

Genome Biol Evol. 2015 Jan 9;7(2):444-56. doi: 10.1093/gbe/evu288.

11.

A genome to unveil the mysteries of orchids.

Albert VA, Carretero-Paulet L.

Nat Genet. 2015 Jan;47(1):3-4. doi: 10.1038/ng.3179.

PMID:
25547596
12.

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.

Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, Cenci A, Combes MC, Crouzillat D, Da Silva C, Daddiego L, De Bellis F, Dussert S, Garsmeur O, Gayraud T, Guignon V, Jahn K, Jamilloux V, Joët T, Labadie K, Lan T, Leclercq J, Lepelley M, Leroy T, Li LT, Librado P, Lopez L, Muñoz A, Noel B, Pallavicini A, Perrotta G, Poncet V, Pot D, Priyono, Rigoreau M, Rouard M, Rozas J, Tranchant-Dubreuil C, VanBuren R, Zhang Q, Andrade AC, Argout X, Bertrand B, de Kochko A, Graziosi G, Henry RJ, Jayarama, Ming R, Nagai C, Rounsley S, Sankoff D, Giuliano G, Albert VA, Wincker P, Lashermes P.

Science. 2014 Sep 5;345(6201):1181-4. doi: 10.1126/science.1255274. Epub 2014 Sep 4.

13.

Preservation of genetic and regulatory robustness in ancient gene duplicates of Saccharomyces cerevisiae.

Keane OM, Toft C, Carretero-Paulet L, Jones GW, Fares MA.

Genome Res. 2014 Nov;24(11):1830-41. doi: 10.1101/gr.176792.114. Epub 2014 Aug 22.

14.

The dynamics of functional classes of plant genes in rediploidized ancient polyploids.

Chen EC, Buen Abad Najar C, Zheng C, Brandts A, Lyons E, Tang H, Carretero-Paulet L, Albert VA, Sankoff D.

BMC Bioinformatics. 2013;14 Suppl 15:S19. doi: 10.1186/1471-2105-14-S15-S19. Epub 2013 Oct 15.

15.

Polar bears exhibit genome-wide signatures of bioenergetic adaptation to life in the arctic environment.

Welch AJ, Bedoya-Reina OC, Carretero-Paulet L, Miller W, Rode KD, Lindqvist C.

Genome Biol Evol. 2014 Feb;6(2):433-50. doi: 10.1093/gbe/evu025.

16.

Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme.

Carretero-Paulet L, Lipska A, Pérez-Gil J, Sangari FJ, Albert VA, Rodríguez-Concepción M.

BMC Evol Biol. 2013 Sep 3;13:180. doi: 10.1186/1471-2148-13-180.

17.

Molecular evolutionary mechanisms driving functional diversification of the HSP90A family of heat shock proteins in eukaryotes.

Carretero-Paulet L, Albert VA, Fares MA.

Mol Biol Evol. 2013 Sep;30(9):2035-43. doi: 10.1093/molbev/mst113. Epub 2013 Jun 27.

18.

Architecture and evolution of a minute plant genome.

Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, Fernández-Cortés A, Arteaga-Vázquez M, Góngora-Castillo E, Acevedo-Hernández G, Schuster SC, Himmelbauer H, Minoche AE, Xu S, Lynch M, Oropeza-Aburto A, Cervantes-Pérez SA, de Jesús Ortega-Estrada M, Cervantes-Luevano JI, Michael TP, Mockler T, Bryant D, Herrera-Estrella A, Albert VA, Herrera-Estrella L.

Nature. 2013 Jun 6;498(7452):94-8. doi: 10.1038/nature12132. Epub 2013 May 12.

19.

Diversification of SUMO-activating enzyme in Arabidopsis: implications in SUMO conjugation.

Castaño-Miquel L, Seguí J, Manrique S, Teixeira I, Carretero-Paulet L, Atencio F, Lois LM.

Mol Plant. 2013 Sep;6(5):1646-60. doi: 10.1093/mp/sst049. Epub 2013 Mar 12.

20.

The roles of whole-genome and small-scale duplications in the functional specialization of Saccharomyces cerevisiae genes.

Fares MA, Keane OM, Toft C, Carretero-Paulet L, Jones GW.

PLoS Genet. 2013;9(1):e1003176. doi: 10.1371/journal.pgen.1003176. Epub 2013 Jan 3.

21.

Functional and evolutionary analysis of DXL1, a non-essential gene encoding a 1-deoxy-D-xylulose 5-phosphate synthase like protein in Arabidopsis thaliana.

Carretero-Paulet L, Cairó A, Talavera D, Saura A, Imperial S, Rodríguez-Concepción M, Campos N, Boronat A.

Gene. 2013 Jul 15;524(1):40-53. doi: 10.1016/j.gene.2012.10.071. Epub 2012 Nov 13.

22.

Evolutionary dynamics and functional specialization of plant paralogs formed by whole and small-scale genome duplications.

Carretero-Paulet L, Fares MA.

Mol Biol Evol. 2012 Nov;29(11):3541-51. doi: 10.1093/molbev/mss162. Epub 2012 Jun 24.

23.

Role of plant-specific N-terminal domain of maize CK2β1 subunit in CK2β functions and holoenzyme regulation.

Riera M, Irar S, Vélez-Bermúdez IC, Carretero-Paulet L, Lumbreras V, Pagès M.

PLoS One. 2011;6(7):e21909. doi: 10.1371/journal.pone.0021909. Epub 2011 Jul 15.

24.

Specific characteristics of CK2β regulatory subunits in plants.

Velez-Bermudez IC, Irar S, Carretero-Paulet L, Pagès M, Riera M.

Mol Cell Biochem. 2011 Oct;356(1-2):255-60. doi: 10.1007/s11010-011-0971-6. Epub 2011 Jul 13.

PMID:
21750977
25.

A new family of enzymes catalyzing the first committed step of the methylerythritol 4-phosphate (MEP) pathway for isoprenoid biosynthesis in bacteria.

Sangari FJ, Pérez-Gil J, Carretero-Paulet L, García-Lobo JM, Rodríguez-Concepción M.

Proc Natl Acad Sci U S A. 2010 Aug 10;107(32):14081-6. doi: 10.1073/pnas.1001962107. Epub 2010 Jul 26.

26.

Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae.

Carretero-Paulet L, Galstyan A, Roig-Villanova I, Martínez-García JF, Bilbao-Castro JR, Robertson DL.

Plant Physiol. 2010 Jul;153(3):1398-412. doi: 10.1104/pp.110.153593. Epub 2010 May 14.

27.

Interaction of shade avoidance and auxin responses: a role for two novel atypical bHLH proteins.

Roig-Villanova I, Bou-Torrent J, Galstyan A, Carretero-Paulet L, Portolés S, Rodríguez-Concepción M, Martínez-García JF.

EMBO J. 2007 Nov 14;26(22):4756-67. Epub 2007 Oct 18.

28.

Enhanced flux through the methylerythritol 4-phosphate pathway in Arabidopsis plants overexpressing deoxyxylulose 5-phosphate reductoisomerase.

Carretero-Paulet L, Cairó A, Botella-Pavía P, Besumbes O, Campos N, Boronat A, Rodríguez-Concepción M.

Plant Mol Biol. 2006 Nov;62(4-5):683-95. Epub 2006 Aug 29.

PMID:
16941216
29.

Regulation of carotenoid biosynthesis in plants: evidence for a key role of hydroxymethylbutenyl diphosphate reductase in controlling the supply of plastidial isoprenoid precursors.

Botella-Pavía P, Besumbes O, Phillips MA, Carretero-Paulet L, Boronat A, Rodríguez-Concepción M.

Plant J. 2004 Oct;40(2):188-99.

30.

Expression and molecular analysis of the Arabidopsis DXR gene encoding 1-deoxy-D-xylulose 5-phosphate reductoisomerase, the first committed enzyme of the 2-C-methyl-D-erythritol 4-phosphate pathway.

Carretero-Paulet L, Ahumada I, Cunillera N, Rodríguez-Concepción M, Ferrer A, Boronat A, Campos N.

Plant Physiol. 2002 Aug;129(4):1581-91.

31.

1-Deoxy-D-xylulose 5-phosphate reductoisomerase and plastid isoprenoid biosynthesis during tomato fruit ripening.

Rodríguez-Concepción M, Ahumada I, Diez-Juez E, Sauret-Güeto S, Lois LM, Gallego F, Carretero-Paulet L, Campos N, Boronat A.

Plant J. 2001 Aug;27(3):213-22.

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