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Cryptic genetic variation shapes the adaptive evolutionary potential of enzymes.

Baier F, Hong N, Yang G, Pabis A, Miton CM, Barrozo A, Carr PD, Kamerlin SC, Jackson CJ, Tokuriki N.

Elife. 2019 Feb 5;8. pii: e40789. doi: 10.7554/eLife.40789.


FAD-sequestering proteins protect mycobacteria against hypoxic and oxidative stress.

Harold LK, Antoney J, Ahmed FH, Hards K, Carr PD, Rapson T, Greening C, Jackson CJ, Cook GM.

J Biol Chem. 2019 Feb 22;294(8):2903-2912. doi: 10.1074/jbc.RA118.006237. Epub 2018 Dec 19.


The evolution of multiple active site configurations in a designed enzyme.

Hong NS, Petrović D, Lee R, Gryn'ova G, Purg M, Saunders J, Bauer P, Carr PD, Lin CY, Mabbitt PD, Zhang W, Altamore T, Easton C, Coote ML, Kamerlin SCL, Jackson CJ.

Nat Commun. 2018 Sep 25;9(1):3900. doi: 10.1038/s41467-018-06305-y.


Synthesis, X-ray Structural Characterization, and DFT Calculations of Mononuclear Nickel(II) Complexes Containing Diamine and Methacrylate Ligands.

Vafazadeh R, Namazian M, Shahpoori-Arani B, Willis AC, Carr PD.

Acta Chim Slov. 2018 Jun;65(2):372-379. doi: 10.17344/acsi.2017.4096.


Evolution of cyclohexadienyl dehydratase from an ancestral solute-binding protein.

Clifton BE, Kaczmarski JA, Carr PD, Gerth ML, Tokuriki N, Jackson CJ.

Nat Chem Biol. 2018 Jun;14(6):542-547. doi: 10.1038/s41589-018-0043-2. Epub 2018 Apr 23.


Palladium-Catalyzed Ullmann Cross-Coupling of β-Iodoenones and β-Iodoacrylates with o-Halonitroarenes or o-Iodobenzonitriles and Reductive Cyclization of the Resulting Products To Give Diverse Heterocyclic Systems.

Khan F, Dlugosch M, Liu X, Khan M, Banwell MG, Ward JS, Carr PD.

Org Lett. 2018 May 4;20(9):2770-2773. doi: 10.1021/acs.orglett.8b01015. Epub 2018 Apr 20.


Mechanistic Basis of pH-Dependent 5-Flucytosine Resistance in Aspergillus fumigatus.

Gsaller F, Furukawa T, Carr PD, Rash B, Jöchl C, Bertuzzi M, Bignell EM, Bromley MJ.

Antimicrob Agents Chemother. 2018 May 25;62(6). pii: e02593-17. doi: 10.1128/AAC.02593-17. Print 2018 Jun.


Structure of an Insecticide Sequestering Carboxylesterase from the Disease Vector Culex quinquefasciatus: What Makes an Enzyme a Good Insecticide Sponge?

Hopkins DH, Fraser NJ, Mabbitt PD, Carr PD, Oakeshott JG, Jackson CJ.

Biochemistry. 2017 Oct 17;56(41):5512-5525. doi: 10.1021/acs.biochem.7b00774. Epub 2017 Sep 29.


Total Synthesis of the Cyclic Carbonate-Containing Natural Product Aspergillusol B from d-(-)-Tartaric Acid.

Buckler JN, Meek T, Banwell MG, Carr PD.

J Nat Prod. 2017 Jul 28;80(7):2088-2093. doi: 10.1021/acs.jnatprod.7b00303. Epub 2017 Jul 19.


Studies on the Photochemical Rearrangements of Enantiomerically Pure, Polysubstituted, and Variously Annulated Bicyclo[2.2.2]octenones.

Yan Q, Bolte B, Bai Y, Banwell MG, Willis AC, Carr PD.

J Org Chem. 2017 Aug 4;82(15):8008-8022. doi: 10.1021/acs.joc.7b01243. Epub 2017 Jul 20.


The Synthesis of Certain Derivatives and Analogues of (-)- and (+)-Galanthamine and an Assessment of their Capacities to Inhibit Acetylcholine Esterase.

Buckler JN, Taher ES, Fraser NJ, Willis AC, Carr PD, Jackson CJ, Banwell MG.

J Org Chem. 2017 Aug 4;82(15):7869-7886. doi: 10.1021/acs.joc.7b01062. Epub 2017 Jul 24.


A Total Synthesis of (±)-3-O-Demethylmacronine through Rearrangement of a Precursor Embodying the Haemanthidine Alkaloid Framework.

Ma X, Gao N, Banwell MG, Carr PD, Willis AC.

J Org Chem. 2017 Apr 21;82(8):4336-4341. doi: 10.1021/acs.joc.7b00340. Epub 2017 Mar 31.


A Unified Approach to the Isomeric α-, β-, γ-, and δ-Carbolines via their 6,7,8,9-Tetrahydro Counterparts.

Yan Q, Gin E, Banwell MG, Willis AC, Carr PD.

J Org Chem. 2017 Apr 21;82(8):4328-4335. doi: 10.1021/acs.joc.7b00323. Epub 2017 Mar 30.


A Palladium-Catalyzed Ullmann Cross-Coupling/Reductive Cyclization Route to the Carbazole Natural Products 3-Methyl-9H-carbazole, Glycoborine, Glycozoline, Clauszoline K, Mukonine, and Karapinchamine A.

Yan Q, Gin E, Wasinska-Kalwa M, Banwell MG, Carr PD.

J Org Chem. 2017 Apr 21;82(8):4148-4159. doi: 10.1021/acs.joc.7b00044. Epub 2017 Apr 3.


Correction: Sterol Biosynthesis and Azole Tolerance Is Governed by the Opposing Actions of SrbA and the CCAAT Binding Complex.

Gsaller F, Hortschansky P, Furukawa T, Carr PD, Rash B, Capilla J, Müller C, Bracher F, Bowyer P, Haas H, Brakhage AA, Bromley MJ.

PLoS Pathog. 2016 Dec 14;12(12):e1006106. doi: 10.1371/journal.ppat.1006106. eCollection 2016 Dec.


Active Site Desolvation and Thermostability Trade-Offs in the Evolution of Catalytically Diverse Triazine Hydrolases.

Sugrue E, Carr PD, Scott C, Jackson CJ.

Biochemistry. 2016 Nov 15;55(45):6304-6313. Epub 2016 Nov 2.


The role of protein dynamics in the evolution of new enzyme function.

Campbell E, Kaltenbach M, Correy GJ, Carr PD, Porebski BT, Livingstone EK, Afriat-Jurnou L, Buckle AM, Weik M, Hollfelder F, Tokuriki N, Jackson CJ.

Nat Chem Biol. 2016 Nov;12(11):944-950. doi: 10.1038/nchembio.2175. Epub 2016 Sep 12.


Sterol Biosynthesis and Azole Tolerance Is Governed by the Opposing Actions of SrbA and the CCAAT Binding Complex.

Gsaller F, Hortschansky P, Furukawa T, Carr PD, Rash B, Capilla J, Müller C, Bracher F, Bowyer P, Haas H, Brakhage AA, Bromley MJ.

PLoS Pathog. 2016 Jul 20;12(7):e1005775. doi: 10.1371/journal.ppat.1005775. eCollection 2016 Jul. Erratum in: PLoS Pathog. 2016 Dec 14;12 (12 ):e1006106.


Rv2074 is a novel F420 H2 -dependent biliverdin reductase in Mycobacterium tuberculosis.

Ahmed FH, Mohamed AE, Carr PD, Lee BM, Condic-Jurkic K, O'Mara ML, Jackson CJ.

Protein Sci. 2016 Sep;25(9):1692-709. doi: 10.1002/pro.2975. Epub 2016 Jul 17.


Mapping the Accessible Conformational Landscape of an Insect Carboxylesterase Using Conformational Ensemble Analysis and Kinetic Crystallography.

Correy GJ, Carr PD, Meirelles T, Mabbitt PD, Fraser NJ, Weik M, Jackson CJ.

Structure. 2016 Jun 7;24(6):977-87. doi: 10.1016/j.str.2016.04.009. Epub 2016 May 19.


Modular Total Syntheses of the Alkaloids Discoipyrroles A and B, Potent Inhibitors of the DDR2 Signaling Pathway.

Zhang Y, Banwell MG, Carr PD, Willis AC.

Org Lett. 2016 Feb 19;18(4):704-7. doi: 10.1021/acs.orglett.5b03672. Epub 2016 Feb 2.


Sequence-Structure-Function Classification of a Catalytically Diverse Oxidoreductase Superfamily in Mycobacteria.

Ahmed FH, Carr PD, Lee BM, Afriat-Jurnou L, Mohamed AE, Hong NS, Flanagan J, Taylor MC, Greening C, Jackson CJ.

J Mol Biol. 2015 Nov 6;427(22):3554-3571. doi: 10.1016/j.jmb.2015.09.021. Epub 2015 Oct 3.


Evolutionary expansion of the amidohydrolase superfamily in bacteria in response to the synthetic compounds molinate and diuron.

Sugrue E, Fraser NJ, Hopkins DH, Carr PD, Khurana JL, Oakeshott JG, Scott C, Jackson CJ.

Appl Environ Microbiol. 2015 Apr;81(7):2612-24. doi: 10.1128/AEM.04016-14. Epub 2015 Jan 30.


Iron(III) located in the dinuclear metallo-β-lactamase IMP-1 by pseudocontact shifts.

Carruthers TJ, Carr PD, Loh CT, Jackson CJ, Otting G.

Angew Chem Int Ed Engl. 2014 Dec 15;53(51):14269-72. doi: 10.1002/anie.201408693. Epub 2014 Oct 15.


Crystal structure of the mouse interleukin-3 β-receptor: insights into interleukin-3 binding and receptor activation.

Carr PD, Ewens CL, Dai J, Ollis DL, Murphy JM, Jackson CJ, Young IG.

Biochem J. 2014 Nov 1;463(3):393-403. doi: 10.1042/BJ20140863.


Crystallization of dienelactone hydrolase in two space groups: structural changes caused by crystal packing.

Porter JL, Carr PD, Collyer CA, Ollis DL.

Acta Crystallogr F Struct Biol Commun. 2014 Jul;70(Pt 7):884-9. doi: 10.1107/S2053230X1401108X. Epub 2014 Jun 18.


300-Fold increase in production of the Zn2+-dependent dechlorinase TrzN in soluble form via apoenzyme stabilization.

Jackson CJ, Coppin CW, Carr PD, Aleksandrov A, Wilding M, Sugrue E, Ubels J, Paks M, Newman J, Peat TS, Russell RJ, Field M, Weik M, Oakeshott JG, Scott C.

Appl Environ Microbiol. 2014 Jul;80(13):4003-11. doi: 10.1128/AEM.00916-14. Epub 2014 Apr 25.


A 5000-fold increase in the specificity of a bacterial phosphotriesterase for malathion through combinatorial active site mutagenesis.

Naqvi T, Warden AC, French N, Sugrue E, Carr PD, Jackson CJ, Scott C.

PLoS One. 2014 Apr 10;9(4):e94177. doi: 10.1371/journal.pone.0094177. eCollection 2014.


Structure and function of an insect α-carboxylesterase (αEsterase7) associated with insecticide resistance.

Jackson CJ, Liu JW, Carr PD, Younus F, Coppin C, Meirelles T, Lethier M, Pandey G, Ollis DL, Russell RJ, Weik M, Oakeshott JG.

Proc Natl Acad Sci U S A. 2013 Jun 18;110(25):10177-82. doi: 10.1073/pnas.1304097110. Epub 2013 Jun 3.


Directed evolution combined with rational design increases activity of GpdQ toward a non-physiological substrate and alters the oligomeric structure of the enzyme.

Yip SH, Foo JL, Schenk G, Gahan LR, Carr PD, Ollis DL.

Protein Eng Des Sel. 2011 Dec;24(12):861-72. doi: 10.1093/protein/gzr048. Epub 2011 Oct 6.


Mutation of outer-shell residues modulates metal ion co-ordination strength in a metalloenzyme.

Foo JL, Jackson CJ, Carr PD, Kim HK, Schenk G, Gahan LR, Ollis DL.

Biochem J. 2010 Jul 15;429(2):313-21. doi: 10.1042/BJ20100233.


The transposon impala is activated by low temperatures: use of a controlled transposition system to identify genes critical for viability of Aspergillus fumigatus.

Carr PD, Tuckwell D, Hey PM, Simon L, d'Enfert C, Birch M, Oliver JD, Bromley MJ.

Eukaryot Cell. 2010 Mar;9(3):438-48. doi: 10.1128/EC.00324-09. Epub 2010 Jan 22.


Structure of the adenylylation domain of E. coli glutamine synthetase adenylyl transferase: evidence for gene duplication and evolution of a new active site.

Xu Y, Carr PD, Vasudevan SG, Ollis DL.

J Mol Biol. 2010 Feb 26;396(3):773-84. doi: 10.1016/j.jmb.2009.12.011. Epub 2009 Dec 21.


Conformational sampling, catalysis, and evolution of the bacterial phosphotriesterase.

Jackson CJ, Foo JL, Tokuriki N, Afriat L, Carr PD, Kim HK, Schenk G, Tawfik DS, Ollis DL.

Proc Natl Acad Sci U S A. 2009 Dec 22;106(51):21631-6. doi: 10.1073/pnas.0907548106. Epub 2009 Dec 4.


Alpha/beta hydrolase fold: an update.

Carr PD, Ollis DL.

Protein Pept Lett. 2009;16(10):1137-48. Review.


Substrate-promoted formation of a catalytically competent binuclear center and regulation of reactivity in a glycerophosphodiesterase from Enterobacter aerogenes.

Hadler KS, Tanifum EA, Yip SH, Mitić N, Guddat LW, Jackson CJ, Gahan LR, Nguyen K, Carr PD, Ollis DL, Hengge AC, Larrabee JA, Schenk G.

J Am Chem Soc. 2008 Oct 29;130(43):14129-38. doi: 10.1021/ja803346w. Epub 2008 Oct 3.


Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal-ion preference.

Jackson CJ, Hadler KS, Carr PD, Oakley AJ, Yip S, Schenk G, Ollis DL.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Aug 1;64(Pt 8):681-5. doi: 10.1107/S1744309108017600. Epub 2008 Jul 5.


Cloning, expression, purification, crystallization and preliminary X-ray studies of a pyridoxine 5'-phosphate oxidase from Mycobacterium smegmatis.

Jackson CJ, Taylor MC, Tattersall DB, French NG, Carr PD, Ollis DL, Russell RJ, Oakeshott JG.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 May 1;64(Pt 5):435-7. doi: 10.1107/S1744309108011512. Epub 2008 Apr 30.


In crystallo capture of a Michaelis complex and product-binding modes of a bacterial phosphotriesterase.

Jackson CJ, Foo JL, Kim HK, Carr PD, Liu JW, Salem G, Ollis DL.

J Mol Biol. 2008 Feb 1;375(5):1189-96. Epub 2007 Nov 1.


The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes.

Jackson CJ, Carr PD, Liu JW, Watt SJ, Beck JL, Ollis DL.

J Mol Biol. 2007 Apr 6;367(4):1047-62. Epub 2007 Jan 20.


Nocardia infections in cats: a retrospective multi-institutional study of 17 cases.

Malik R, Krockenberger MB, O'Brien CR, White JD, Foster D, Tisdall PL, Gunew M, Carr PD, Bodell L, McCowan C, Howe J, Oakley C, Griffin C, Wigney DI, Martin P, Norris J, Hunt G, Mitchell DH, Gilpin C.

Aust Vet J. 2006 Jul;84(7):235-45.


The purification, crystallization and preliminary diffraction of a glycerophosphodiesterase from Enterobacter aerogenes.

Jackson CJ, Carr PD, Kim HK, Liu JW, Ollis DL.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Jul 1;62(Pt 7):659-61. Epub 2006 Jun 10.


An improved resolution structure of the human beta common receptor involved in IL-3, IL-5 and GM-CSF signalling which gives better definition of the high-affinity binding epitope.

Carr PD, Conlan F, Ford S, Ollis DL, Young IG.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Jun 1;62(Pt 6):509-13. Epub 2006 May 31.


Anomalous scattering analysis of Agrobacterium radiobacter phosphotriesterase: the prominent role of iron in the heterobinuclear active site.

Jackson CJ, Carr PD, Kim HK, Liu JW, Herrald P, Mitić N, Schenk G, Smith CA, Ollis DL.

Biochem J. 2006 Aug 1;397(3):501-8.


Expression, purification and crystallization of the C-terminal domain of Escherichia coli adenylyltransferase.

Xu Y, Wen D, Brown C, Chen CJ, Carr PD, Ollis DL, Vasudevan SG.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Jul 1;61(Pt 7):663-5. Epub 2005 Jun 15.


Following directed evolution with crystallography: structural changes observed in changing the substrate specificity of dienelactone hydrolase.

Kim HK, Liu JW, Carr PD, Ollis DL.

Acta Crystallogr D Biol Crystallogr. 2005 Jul;61(Pt 7):920-31. Epub 2005 Jun 24.


Structure of the N-terminal domain of Escherichia coli glutamine synthetase adenylyltransferase.

Xu Y, Zhang R, Joachimiak A, Carr PD, Huber T, Vasudevan SG, Ollis DL.

Structure. 2004 May;12(5):861-9.


Expression, purification, crystallization, and preliminary X-ray analysis of the N-terminal domain of Escherichia coli adenylyl transferase.

Xu Y, Wen D, Clancy P, Carr PD, Ollis DL, Vasudevan SG.

Protein Expr Purif. 2004 Mar;34(1):142-6.


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