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Evolution of the Cell Wall Gene Families of Grasses.

Penning BW, McCann MC, Carpita NC.

Front Plant Sci. 2019 Oct 4;10:1205. doi: 10.3389/fpls.2019.01205. eCollection 2019.


Expression profiles of cell-wall related genes vary broadly between two common maize inbreds during stem development.

Penning BW, Shiga TM, Klimek JF, SanMiguel PJ, Shreve J, Thimmapuram J, Sykes RW, Davis MF, McCann MC, Carpita NC.

BMC Genomics. 2019 Oct 29;20(1):785. doi: 10.1186/s12864-019-6117-z.


Rhamnogalacturonan-I is a determinant of cell-cell adhesion in poplar wood.

Yang H, Benatti MR, Karve RA, Fox A, Meilan R, Carpita NC, McCann MC.

Plant Biotechnol J. 2019 Oct 4. doi: 10.1111/pbi.13271. [Epub ahead of print]


Differential distributions of trafficking and signaling proteins of the maize ER-Golgi apparatus.

Okekeogbu IO, Aryal UK, Fernández-Niño SMG, Penning BW, Heazlewood JL, McCann MC, Carpita NC.

Plant Signal Behav. 2019;14(12):1672513. doi: 10.1080/15592324.2019.1672513. Epub 2019 Sep 28.


Linkage structure of cell-wall polysaccharides from three duckweed species.

Sowinski EE, Gilbert S, Lam E, Carpita NC.

Carbohydr Polym. 2019 Nov 1;223:115119. doi: 10.1016/j.carbpol.2019.115119. Epub 2019 Jul 26.


Overcoming cellulose recalcitrance in woody biomass for the lignin-first biorefinery.

Yang H, Zhang X, Luo H, Liu B, Shiga TM, Li X, Kim JI, Rubinelli P, Overton JC, Subramanyam V, Cooper BR, Mo H, Abu-Omar MM, Chapple C, Donohoe BS, Makowski L, Mosier NS, McCann MC, Carpita NC, Meilan R.

Biotechnol Biofuels. 2019 Jun 29;12:171. doi: 10.1186/s13068-019-1503-y. eCollection 2019.


Arabinose biosynthesis is critical for salt stress tolerance in Arabidopsis.

Zhao C, Zayed O, Zeng F, Liu C, Zhang L, Zhu P, Hsu CC, Tuncil YE, Tao WA, Carpita NC, Zhu JK.

New Phytol. 2019 Oct;224(1):274-290. doi: 10.1111/nph.15867. Epub 2019 May 17.


Glycome and Proteome Components of Golgi Membranes Are Common between Two Angiosperms with Distinct Cell-Wall Structures.

Okekeogbu IO, Pattathil S, González Fernández-Niño SM, Aryal UK, Penning BW, Lao J, Heazlewood JL, Hahn MG, McCann MC, Carpita NC.

Plant Cell. 2019 May;31(5):1094-1112. doi: 10.1105/tpc.18.00755. Epub 2019 Mar 26.


Migration and proliferation of cancer cells in culture are differentially affected by molecular size of modified citrus pectin.

do Prado SBR, Shiga TM, Harazono Y, Hogan VA, Raz A, Carpita NC, Fabi JP.

Carbohydr Polym. 2019 May 1;211:141-151. doi: 10.1016/j.carbpol.2019.02.010. Epub 2019 Feb 4.


Enhanced rates of enzymatic saccharification and catalytic synthesis of biofuel substrates in gelatinized cellulose generated by trifluoroacetic acid.

Shiga TM, Xiao W, Yang H, Zhang X, Olek AT, Donohoe BS, Liu J, Makowski L, Hou T, McCann MC, Carpita NC, Mosier NS.

Biotechnol Biofuels. 2017 Dec 27;10:310. doi: 10.1186/s13068-017-0999-2. eCollection 2017.


Ripening-induced chemical modifications of papaya pectin inhibit cancer cell proliferation.

Prado SBRD, Ferreira GF, Harazono Y, Shiga TM, Raz A, Carpita NC, Fabi JP.

Sci Rep. 2017 Nov 29;7(1):16564. doi: 10.1038/s41598-017-16709-3.


Rhamnose-Containing Cell Wall Polymers Suppress Helical Plant Growth Independently of Microtubule Orientation.

Saffer AM, Carpita NC, Irish VF.

Curr Biol. 2017 Aug 7;27(15):2248-2259.e4. doi: 10.1016/j.cub.2017.06.032. Epub 2017 Jul 20.


Two banana cultivars differ in composition of potentially immunomodulatory mannan and arabinogalactan.

Shiga TM, Carpita NC, Lajolo FM, Cordenunsi-Lysenko BR.

Carbohydr Polym. 2017 May 15;164:31-41. doi: 10.1016/j.carbpol.2017.01.079. Epub 2017 Jan 22.


Rice Cellulose SynthaseA8 Plant-Conserved Region Is a Coiled-Coil at the Catalytic Core Entrance.

Rushton PS, Olek AT, Makowski L, Badger J, Steussy CN, Carpita NC, Stauffacher CV.

Plant Physiol. 2017 Jan;173(1):482-494. doi: 10.1104/pp.16.00739. Epub 2016 Nov 22.


The Cell Wall Arabinose-Deficient Arabidopsis thaliana Mutant murus5 Encodes a Defective Allele of REVERSIBLY GLYCOSYLATED POLYPEPTIDE2.

Dugard CK, Mertz RA, Rayon C, Mercadante D, Hart C, Benatti MR, Olek AT, SanMiguel PJ, Cooper BR, Reiter WD, McCann MC, Carpita NC.

Plant Physiol. 2016 Jul;171(3):1905-20. doi: 10.1104/pp.15.01922. Epub 2016 May 23.


Cell wall targeted in planta iron accumulation enhances biomass conversion and seed iron concentration in Arabidopsis and rice.

Yang H, Wei H, Ma G, Antunes MS, Vogt S, Cox J, Zhang X, Liu X, Bu L, Gleber SC, Carpita NC, Makowski L, Himmel ME, Tucker MP, McCann MC, Murphy AS, Peer WA.

Plant Biotechnol J. 2016 Oct;14(10):1998-2009. doi: 10.1111/pbi.12557. Epub 2016 Apr 7.


A benzoate-activated promoter from Aspergillus niger and regulation of its activity.

Antunes MS, Hodges TK, Carpita NC.

Appl Microbiol Biotechnol. 2016 Jun;100(12):5479-89. doi: 10.1007/s00253-016-7373-3. Epub 2016 Feb 23.


Plants and bioenergy.

Carpita NC, Sage RF.

J Exp Bot. 2015 Jul;66(14):4093-5. No abstract available.


Polysaccharide composition of raw and cooked chayote (Sechium edule Sw.) fruits and tuberous roots.

Shiga TM, Peroni-Okita FH, Carpita NC, Lajolo FM, Cordenunsi BR.

Carbohydr Polym. 2015 Oct 5;130:155-65. doi: 10.1016/j.carbpol.2015.04.055. Epub 2015 May 8.


Biomass recalcitrance: a multi-scale, multi-factor, and conversion-specific property.

McCann MC, Carpita NC.

J Exp Bot. 2015 Jul;66(14):4109-18. doi: 10.1093/jxb/erv267. Epub 2015 Jun 9. Review.


Characterizing visible and invisible cell wall mutant phenotypes.

Carpita NC, McCann MC.

J Exp Bot. 2015 Jul;66(14):4145-63. doi: 10.1093/jxb/erv090. Epub 2015 Apr 6. Review.


The structure of the catalytic domain of a plant cellulose synthase and its assembly into dimers.

Olek AT, Rayon C, Makowski L, Kim HR, Ciesielski P, Badger J, Paul LN, Ghosh S, Kihara D, Crowley M, Himmel ME, Bolin JT, Carpita NC.

Plant Cell. 2014 Jul;26(7):2996-3009. doi: 10.1105/tpc.114.126862. Epub 2014 Jul 10.


Genetic Determinants for Enzymatic Digestion of Lignocellulosic Biomass Are Independent of Those for Lignin Abundance in a Maize Recombinant Inbred Population.

Penning BW, Sykes RW, Babcock NC, Dugard CK, Held MA, Klimek JF, Shreve JT, Fowler M, Ziebell A, Davis MF, Decker SR, Turner GB, Mosier NS, Springer NM, Thimmapuram J, Weil CF, McCann MC, Carpita NC.

Plant Physiol. 2014 Aug;165(4):1475-1487. Epub 2014 Jun 27.


Structural alteration of cell wall pectins accompanies pea development in response to cold.

Baldwin L, Domon JM, Klimek JF, Fournet F, Sellier H, Gillet F, Pelloux J, Lejeune-Hénaut I, Carpita NC, Rayon C.

Phytochemistry. 2014 Aug;104:37-47. doi: 10.1016/j.phytochem.2014.04.011. Epub 2014 May 13.


Analysis of xyloglucans by ambient chloride attachment ionization tandem mass spectrometry.

Vinueza NR, Gallardo VA, Klimek JF, Carpita NC, Kenttämaa HI.

Carbohydr Polym. 2013 Oct 15;98(1):1203-13. doi: 10.1016/j.carbpol.2013.06.070. Epub 2013 Jul 8.


We are good to grow: dynamic integration of cell wall architecture with the machinery of growth.

Benatti MR, Penning BW, Carpita NC, McCann MC.

Front Plant Sci. 2012 Aug 22;3:187. doi: 10.3389/fpls.2012.00187. eCollection 2012.


Alterations in cell-wall glycosyl linkage structure of Arabidopsis murus mutants.

Mertz RA, Olek AT, Carpita NC.

Carbohydr Polym. 2012 Jun 20;89(2):331-9. doi: 10.1016/j.carbpol.2012.02.044. Epub 2012 Mar 28.


Sphingomonas cynarae sp. nov., a proteobacterium that produces an unusual type of sphingan.

Talà A, Lenucci M, Gaballo A, Durante M, Tredici SM, Debowles DA, Pizzolante G, Marcuccio C, Carata E, Piro G, Carpita NC, Mita G, Alifano P.

Int J Syst Evol Microbiol. 2013 Jan;63(Pt 1):72-9. doi: 10.1099/ijs.0.032060-0. Epub 2012 Feb 10.


Progress in the biological synthesis of the plant cell wall: new ideas for improving biomass for bioenergy.

Carpita NC.

Curr Opin Biotechnol. 2012 Jun;23(3):330-7. doi: 10.1016/j.copbio.2011.12.003. Epub 2011 Dec 28. Review.


Cell wall polysaccharides from fern leaves: evidence for a mannan-rich Type III cell wall in Adiantum raddianum.

Silva GB, Ionashiro M, Carrara TB, Crivellari AC, Tiné MA, Prado J, Carpita NC, Buckeridge MS.

Phytochemistry. 2011 Dec;72(18):2352-60. doi: 10.1016/j.phytochem.2011.08.020. Epub 2011 Sep 28.


Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis.

Klopffleisch K, Phan N, Augustin K, Bayne RS, Booker KS, Botella JR, Carpita NC, Carr T, Chen JG, Cooke TR, Frick-Cheng A, Friedman EJ, Fulk B, Hahn MG, Jiang K, Jorda L, Kruppe L, Liu C, Lorek J, McCann MC, Molina A, Moriyama EN, Mukhtar MS, Mudgil Y, Pattathil S, Schwarz J, Seta S, Tan M, Temp U, Trusov Y, Urano D, Welter B, Yang J, Panstruga R, Uhrig JF, Jones AM.

Mol Syst Biol. 2011 Sep 27;7:532. doi: 10.1038/msb.2011.66.


The Arabidopsis transcription factor LUH/MUM1 is required for extrusion of seed coat mucilage.

Huang J, DeBowles D, Esfandiari E, Dean G, Carpita NC, Haughn GW.

Plant Physiol. 2011 Jun;156(2):491-502. doi: 10.1104/pp.111.172023. Epub 2011 Apr 25.


Perturbation of wood cellulose synthesis causes pleiotropic effects in transgenic aspen.

Joshi CP, Thammannagowda S, Fujino T, Gou JQ, Avci U, Haigler CH, McDonnell LM, Mansfield SD, Mengesha B, Carpita NC, Harris D, Debolt S, Peter GF.

Mol Plant. 2011 Mar;4(2):331-45. doi: 10.1093/mp/ssq081. Epub 2011 Feb 7.


Update on mechanisms of plant cell wall biosynthesis: how plants make cellulose and other (1->4)-β-D-glycans.

Carpita NC.

Plant Physiol. 2011 Jan;155(1):171-84. doi: 10.1104/pp.110.163360. Epub 2010 Nov 4. Review. No abstract available.


The maize mixed-linkage (1->3),(1->4)-beta-D-glucan polysaccharide is synthesized at the golgi membrane.

Carpita NC, McCann MC.

Plant Physiol. 2010 Jul;153(3):1362-71. doi: 10.1104/pp.110.156158. Epub 2010 May 20.


The B73 maize genome: complexity, diversity, and dynamics.

Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK.

Science. 2009 Nov 20;326(5956):1112-5. doi: 10.1126/science.1178534. Erratum in: Science. 2012 Aug 31;337(6098):1040.


Genetic resources for maize cell wall biology.

Penning BW, Hunter CT 3rd, Tayengwa R, Eveland AL, Dugard CK, Olek AT, Vermerris W, Koch KE, McCarty DR, Davis MF, Thomas SR, McCann MC, Carpita NC.

Plant Physiol. 2009 Dec;151(4):1703-28. doi: 10.1104/pp.109.136804. Epub 2009 Nov 19.


The thanatos mutation in Arabidopsis thaliana cellulose synthase 3 (AtCesA3) has a dominant-negative effect on cellulose synthesis and plant growth.

Daras G, Rigas S, Penning B, Milioni D, McCann MC, Carpita NC, Fasseas C, Hatzopoulos P.

New Phytol. 2009;184(1):114-26. doi: 10.1111/j.1469-8137.2009.02960.x. Epub 2009 Jul 23.


AtBXL1 encodes a bifunctional beta-D-xylosidase/alpha-L-arabinofuranosidase required for pectic arabinan modification in Arabidopsis mucilage secretory cells.

Arsovski AA, Popma TM, Haughn GW, Carpita NC, McCann MC, Western TL.

Plant Physiol. 2009 Jul;150(3):1219-34. doi: 10.1104/pp.109.138388. Epub 2009 May 20.


The Sorghum bicolor genome and the diversification of grasses.

Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Narechania A, Otillar RP, Penning BW, Salamov AA, Wang Y, Zhang L, Carpita NC, Freeling M, Gingle AR, Hash CT, Keller B, Klein P, Kresovich S, McCann MC, Ming R, Peterson DG, Mehboob-ur-Rahman, Ware D, Westhoff P, Mayer KF, Messing J, Rokhsar DS.

Nature. 2009 Jan 29;457(7229):551-6. doi: 10.1038/nature07723.


Small-interfering RNAs from natural antisense transcripts derived from a cellulose synthase gene modulate cell wall biosynthesis in barley.

Held MA, Penning B, Brandt AS, Kessans SA, Yong W, Scofield SR, Carpita NC.

Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20534-9. doi: 10.1073/pnas.0809408105. Epub 2008 Dec 15.


Novel rhamnogalacturonan I and arabinoxylan polysaccharides of flax seed mucilage.

Naran R, Chen G, Carpita NC.

Plant Physiol. 2008 Sep;148(1):132-41. doi: 10.1104/pp.108.123513. Epub 2008 Jul 30.


Maize and sorghum: genetic resources for bioenergy grasses.

Carpita NC, McCann MC.

Trends Plant Sci. 2008 Aug;13(8):415-20. doi: 10.1016/j.tplants.2008.06.002. Epub 2008 Jul 21.


Designing the deconstruction of plant cell walls.

McCann MC, Carpita NC.

Curr Opin Plant Biol. 2008 Jun;11(3):314-20. doi: 10.1016/j.pbi.2008.04.001. Epub 2008 May 15. Review.


The Arabidopsis MUM2 gene encodes a beta-galactosidase required for the production of seed coat mucilage with correct hydration properties.

Dean GH, Zheng H, Tewari J, Huang J, Young DS, Hwang YT, Western TL, Carpita NC, McCann MC, Mansfield SD, Haughn GW.

Plant Cell. 2007 Dec;19(12):4007-21. doi: 10.1105/tpc.107.050609. Epub 2007 Dec 28.


Maize Brittle stalk2 encodes a COBRA-like protein expressed in early organ development but required for tissue flexibility at maturity.

Sindhu A, Langewisch T, Olek A, Multani DS, McCann MC, Vermerris W, Carpita NC, Johal G.

Plant Physiol. 2007 Dec;145(4):1444-59. Epub 2007 Oct 11.


Neural network analyses of infrared spectra for classifying cell wall architectures.

McCann MC, Defernez M, Urbanowicz BR, Tewari JC, Langewisch T, Olek A, Wells B, Wilson RH, Carpita NC.

Plant Physiol. 2007 Mar;143(3):1314-26. Epub 2007 Jan 12.


Spectroscopic and biochemical analysis of regions of the cell wall of the unicellular 'mannan weed', Acetabularia acetabulum.

Dunn EK, Shoue DA, Huang X, Kline RE, MacKay AL, Carpita NC, Taylor IE, Mandoli DF.

Plant Cell Physiol. 2007 Jan;48(1):122-33. Epub 2006 Dec 13.


Phosphate starvation responses are mediated by sugar signaling in Arabidopsis.

Karthikeyan AS, Varadarajan DK, Jain A, Held MA, Carpita NC, Raghothama KG.

Planta. 2007 Mar;225(4):907-18.


Genomics of plant cell wall biogenesis.

Yong W, Link B, O'Malley R, Tewari J, Hunter CT, Lu CA, Li X, Bleecker AB, Koch KE, McCann MC, McCarty DR, Patterson SE, Reiter WD, Staiger C, Thomas SR, Vermerris W, Carpita NC.

Planta. 2005 Aug;221(6):747-51. Epub 2005 Jun 25. Review. No abstract available.


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