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Items: 1 to 50 of 73

1.

The distribution and relative ecological roles of autotrophic and heterotrophic diazotrophs in the McMurdo Dry Valleys, Antarctica.

Coyne KJ, Parker AE, Lee CK, Sohm JA, Kalmbach A, Gunderson T, León-Zayas R, Capone DG, Carpenter EJ, Cary SC.

FEMS Microbiol Ecol. 2020 Mar 1;96(3). pii: fiaa010. doi: 10.1093/femsec/fiaa010.

2.

Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP).

Carpenter EJ, Matasci N, Ayyampalayam S, Wu S, Sun J, Yu J, Jimenez Vieira FR, Bowler C, Dorrell RG, Gitzendanner MA, Li L, Du W, K Ullrich K, Wickett NJ, Barkmann TJ, Barker MS, Leebens-Mack JH, Wong GK.

Gigascience. 2019 Oct 1;8(10). pii: giz126. doi: 10.1093/gigascience/giz126.

3.

Investigating Instructor Talk in Novel Contexts: Widespread Use, Unexpected Categories, and an Emergent Sampling Strategy.

Harrison CD, Nguyen TA, Seidel SB, Escobedo AM, Hartman C, Lam K, Liang KS, Martens M, Acker GN, Akana SF, Balukjian B, Benton HP, Blair JR, Boaz SM, Boyer KE, Bram JB, Burrus LW, Byrd DT, Caporale N, Carpenter EJ, Chan YM, Chen L, Chovnick A, Chu DS, Clarkson BK, Cooper SE, Creech CJ, de la Torre JR, Denetclaw WF, Duncan K, Edwards AS, Erickson K, Fuse M, Gorga JJ, Govindan B, Green LJ, Hankamp PZ, Harris HE, He ZH, Ingalls SB, Ingmire PD, Jacobs JR, Kamakea M, Kimpo RR, Knight JD, Krause SK, Krueger LE, Light TL, Lund L, Márquez-Magaña LM, McCarthy BK, McPheron L, Miller-Sims VC, Moffatt CA, Muick PC, Nagami PH, Nusse G, Okimura KM, Pasion SG, Patterson R, Pennings PS, Riggs B, Romeo JM, Roy SW, Russo-Tait T, Schultheis LM, Sengupta L, Spicer GS, Swei A, Wade JM, Willsie JK, Kelley LA, Owens MT, Trujillo G, Domingo C, Schinske JN, Tanner KD.

CBE Life Sci Educ. 2019 Sep;18(3):ar47. doi: 10.1187/cbe.18-10-0215.

4.

Impact of sequencing depth and technology on de novo RNA-Seq assembly.

Patterson J, Carpenter EJ, Zhu Z, An D, Liang X, Geng C, Drmanac R, Wong GK.

BMC Genomics. 2019 Jul 23;20(1):604. doi: 10.1186/s12864-019-5965-x.

5.

Biofilm facilitates metal accumulation onto microplastics in estuarine waters.

Richard H, Carpenter EJ, Komada T, Palmer PT, Rochman CM.

Sci Total Environ. 2019 Sep 15;683:600-608. doi: 10.1016/j.scitotenv.2019.04.331. Epub 2019 Apr 24.

PMID:
31146064
6.

Effect of ocean acidification on the nutritional quality of marine phytoplankton for copepod reproduction.

Meyers MT, Cochlan WP, Carpenter EJ, Kimmerer WJ.

PLoS One. 2019 May 20;14(5):e0217047. doi: 10.1371/journal.pone.0217047. eCollection 2019.

7.

Rapid Microbial Dynamics in Response to an Induced Wetting Event in Antarctic Dry Valley Soils.

Niederberger TD, Bottos EM, Sohm JA, Gunderson T, Parker A, Coyne KJ, Capone DG, Carpenter EJ, Cary SC.

Front Microbiol. 2019 Apr 4;10:621. doi: 10.3389/fmicb.2019.00621. eCollection 2019.

8.

Collectively Improving Our Teaching: Attempting Biology Department-wide Professional Development in Scientific Teaching.

Owens MT, Trujillo G, Seidel SB, Harrison CD, Farrar KM, Benton HP, Blair JR, Boyer KE, Breckler JL, Burrus LW, Byrd DT, Caporale N, Carpenter EJ, Chan YM, Chen JC, Chen L, Chen LH, Chu DS, Cochlan WP, Crook RJ, Crow KD, de la Torre JR, Denetclaw WF, Dowdy LM, Franklin D, Fuse M, Goldman MA, Govindan B, Green M, Harris HE, He ZH, Ingalls SB, Ingmire P, Johnson ARB, Knight JD, LeBuhn G, Light TL, Low C, Lund L, Márquez-Magaña LM, Miller-Sims VC, Moffatt CA, Murdock H, Nusse GL, Parker VT, Pasion SG, Patterson R, Pennings PS, Ramirez JC, Ramirez RM, Riggs B, Rohlfs RV, Romeo JM, Rothman BS, Roy SW, Russo-Tait T, Sehgal RNM, Simonin KA, Spicer GS, Stillman JH, Swei A, Timpe LC, Vredenburg VT, Weinstein SL, Zink AG, Kelley LA, Domingo CR, Tanner KD.

CBE Life Sci Educ. 2018 Spring;17(1). pii: ar2. doi: 10.1187/cbe.17-06-0106. Erratum in: CBE Life Sci Educ. 2018 Spring;17 (1):.

9.

Nonlinear Self-Action of Light through Biological Suspensions.

Bezryadina A, Hansson T, Gautam R, Wetzel B, Siggins G, Kalmbach A, Lamstein J, Gallardo D, Carpenter EJ, Ichimura A, Morandotti R, Chen Z.

Phys Rev Lett. 2017 Aug 4;119(5):058101. doi: 10.1103/PhysRevLett.119.058101. Epub 2017 Aug 4.

PMID:
28949726
10.

Mesozooplankton Graze on Cyanobacteria in the Amazon River Plume and Western Tropical North Atlantic.

Conroy BJ, Steinberg DK, Song B, Kalmbach A, Carpenter EJ, Foster RA.

Front Microbiol. 2017 Aug 3;8:1436. doi: 10.3389/fmicb.2017.01436. eCollection 2017.

11.

Insights into the Evolution of Hydroxyproline-Rich Glycoproteins from 1000 Plant Transcriptomes.

Johnson KL, Cassin AM, Lonsdale A, Wong GK, Soltis DE, Miles NW, Melkonian M, Melkonian B, Deyholos MK, Leebens-Mack J, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, Pires JC, Edger PP, Carpenter EJ, Bacic A, Doblin MS, Schultz CJ.

Plant Physiol. 2017 Jun;174(2):904-921. doi: 10.1104/pp.17.00295. Epub 2017 Apr 26.

12.

Classroom sound can be used to classify teaching practices in college science courses.

Owens MT, Seidel SB, Wong M, Bejines TE, Lietz S, Perez JR, Sit S, Subedar ZS, Acker GN, Akana SF, Balukjian B, Benton HP, Blair JR, Boaz SM, Boyer KE, Bram JB, Burrus LW, Byrd DT, Caporale N, Carpenter EJ, Chan YM, Chen L, Chovnick A, Chu DS, Clarkson BK, Cooper SE, Creech C, Crow KD, de la Torre JR, Denetclaw WF, Duncan KE, Edwards AS, Erickson KL, Fuse M, Gorga JJ, Govindan B, Green LJ, Hankamp PZ, Harris HE, He ZH, Ingalls S, Ingmire PD, Jacobs JR, Kamakea M, Kimpo RR, Knight JD, Krause SK, Krueger LE, Light TL, Lund L, Márquez-Magaña LM, McCarthy BK, McPheron LJ, Miller-Sims VC, Moffatt CA, Muick PC, Nagami PH, Nusse GL, Okimura KM, Pasion SG, Patterson R, Pennings PS, Riggs B, Romeo J, Roy SW, Russo-Tait T, Schultheis LM, Sengupta L, Small R, Spicer GS, Stillman JH, Swei A, Wade JM, Waters SB, Weinstein SL, Willsie JK, Wright DW, Harrison CD, Kelley LA, Trujillo G, Domingo CR, Schinske JN, Tanner KD.

Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):3085-3090. doi: 10.1073/pnas.1618693114. Epub 2017 Mar 6.

13.

The Evolution of HD2 Proteins in Green Plants.

Bourque S, Jeandroz S, Grandperret V, Lehotai N, Aimé S, Soltis DE, Miles NW, Melkonian M, Deyholos MK, Leebens-Mack JH, Chase MW, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, Pires JC, Edger PP, Yan Z, Xie Y, Carpenter EJ, Wong GKS, Wendehenne D, Nicolas-Francès V.

Trends Plant Sci. 2016 Dec;21(12):1008-1016. doi: 10.1016/j.tplants.2016.10.001. Epub 2016 Oct 24. Review.

PMID:
27789157
14.

Patterns of Transcript Abundance of Eukaryotic Biogeochemically-Relevant Genes in the Amazon River Plume.

Zielinski BL, Allen AE, Carpenter EJ, Coles VJ, Crump BC, Doherty M, Foster RA, Goes JI, Gomes HR, Hood RR, McCrow JP, Montoya JP, Moustafa A, Satinsky BM, Sharma S, Smith CB, Yager PL, Paul JH.

PLoS One. 2016 Sep 6;11(9):e0160929. doi: 10.1371/journal.pone.0160929. eCollection 2016.

15.

Occurrence, structure, and evolution of nitric oxide synthase-like proteins in the plant kingdom.

Jeandroz S, Wipf D, Stuehr DJ, Lamattina L, Melkonian M, Tian Z, Zhu Y, Carpenter EJ, Wong GK, Wendehenne D.

Sci Signal. 2016 Mar 1;9(417):re2. doi: 10.1126/scisignal.aad4403. Review.

PMID:
26933064
16.

Functional and topological diversity of LOV domain photoreceptors.

Glantz ST, Carpenter EJ, Melkonian M, Gardner KH, Boyden ES, Wong GK, Chow BY.

Proc Natl Acad Sci U S A. 2016 Mar 15;113(11):E1442-51. doi: 10.1073/pnas.1509428113. Epub 2016 Feb 29.

17.

Carbon-Fixation Rates and Associated Microbial Communities Residing in Arid and Ephemerally Wet Antarctic Dry Valley Soils.

Niederberger TD, Sohm JA, Gunderson T, Tirindelli J, Capone DG, Carpenter EJ, Cary SC.

Front Microbiol. 2015 Dec 9;6:1347. doi: 10.3389/fmicb.2015.01347. eCollection 2015.

18.

Peptidomics of Circular Cysteine-Rich Plant Peptides: Analysis of the Diversity of Cyclotides from Viola tricolor by Transcriptome and Proteome Mining.

Hellinger R, Koehbach J, Soltis DE, Carpenter EJ, Wong GK, Gruber CW.

J Proteome Res. 2015 Nov 6;14(11):4851-62. doi: 10.1021/acs.jproteome.5b00681. Epub 2015 Oct 8.

19.

The Origin and Evolution of the Plant Cell Surface: Algal Integrin-Associated Proteins and a New Family of Integrin-Like Cytoskeleton-ECM Linker Proteins.

Becker B, Doan JM, Wustman B, Carpenter EJ, Chen L, Zhang Y, Wong GK, Melkonian M.

Genome Biol Evol. 2015 May 14;7(6):1580-9. doi: 10.1093/gbe/evv089.

20.

Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing.

Yang Y, Moore MJ, Brockington SF, Soltis DE, Wong GK, Carpenter EJ, Zhang Y, Chen L, Yan Z, Xie Y, Sage RF, Covshoff S, Hibberd JM, Nelson MN, Smith SA.

Mol Biol Evol. 2015 Aug;32(8):2001-14. doi: 10.1093/molbev/msv081. Epub 2015 Apr 2.

21.

Microbial community composition of transiently wetted Antarctic Dry Valley soils.

Niederberger TD, Sohm JA, Gunderson TE, Parker AE, Tirindelli J, Capone DG, Carpenter EJ, Cary SC.

Front Microbiol. 2015 Jan 28;6:9. doi: 10.3389/fmicb.2015.00009. eCollection 2015.

22.

Data access for the 1,000 Plants (1KP) project.

Matasci N, Hung LH, Yan Z, Carpenter EJ, Wickett NJ, Mirarab S, Nguyen N, Warnow T, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Wafula E, Der JP, dePamphilis CW, Roure B, Philippe H, Ruhfel BR, Miles NW, Graham SW, Mathews S, Surek B, Melkonian M, Soltis DE, Soltis PS, Rothfels C, Pokorny L, Shaw JA, DeGironimo L, Stevenson DW, Villarreal JC, Chen T, Kutchan TM, Rolf M, Baucom RS, Deyholos MK, Samudrala R, Tian Z, Wu X, Sun X, Zhang Y, Wang J, Leebens-Mack J, Wong GK.

Gigascience. 2014 Oct 27;3:17. doi: 10.1186/2047-217X-3-17. eCollection 2014. Review.

23.

Frequent proviral integration of the human betaretrovirus in biliary epithelium of patients with autoimmune and idiopathic liver disease.

Wang W, Indik S, Wasilenko ST, Faschinger A, Carpenter EJ, Tian Z, Zhang Y, Wong GK, Mason AL.

Aliment Pharmacol Ther. 2015 Feb;41(4):393-405. doi: 10.1111/apt.13054. Epub 2014 Dec 18.

24.

Addendum: independent optical excitation of distinct neural populations.

Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, Morimoto TK, Chuong AS, Carpenter EJ, Tian Z, Wang J, Xie Y, Yan Z, Zhang Y, Chow BY, Surek B, Melkonian M, Jayaraman V, Constantine-Paton M, Wong GK, Edward S Boyden ES.

Nat Methods. 2014 Sep;11(9):972. No abstract available.

25.

Rapid HIV Testing in a New Orleans Emergency Department is Effective in Identifying New HIV Diagnoses and in Linking Patients to Care.

Richey LE, Carpenter EJ, Barbeau JM, Hadi CM.

J La State Med Soc. 2014 Jan-Feb;166(1):28-33. Epub 2014 Feb 10.

PMID:
25075506
26.

Detecting in situ copepod diet diversity using molecular technique: development of a copepod/symbiotic ciliate-excluding eukaryote-inclusive PCR protocol.

Hu S, Guo Z, Li T, Carpenter EJ, Liu S, Lin S.

PLoS One. 2014 Jul 24;9(7):e103528. doi: 10.1371/journal.pone.0103528. eCollection 2014.

27.

Independent optical excitation of distinct neural populations.

Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, Morimoto TK, Chuong AS, Carpenter EJ, Tian Z, Wang J, Xie Y, Yan Z, Zhang Y, Chow BY, Surek B, Melkonian M, Jayaraman V, Constantine-Paton M, Wong GK, Boyden ES.

Nat Methods. 2014 Mar;11(3):338-46. doi: 10.1038/nmeth.2836. Epub 2014 Feb 9. Erratum in: Nat Methods. 2014 Sep;11(9):971.

28.

Emiliania huxleyi increases calcification but not expression of calcification-related genes in long-term exposure to elevated temperature and pCO2.

Benner I, Diner RE, Lefebvre SC, Li D, Komada T, Carpenter EJ, Stillman JH.

Philos Trans R Soc Lond B Biol Sci. 2013 Aug 26;368(1627):20130049. doi: 10.1098/rstb.2013.0049. Print 2013.

29.

Cyclotide discovery in Gentianales revisited--identification and characterization of cyclic cystine-knot peptides and their phylogenetic distribution in Rubiaceae plants.

Koehbach J, Attah AF, Berger A, Hellinger R, Kutchan TM, Carpenter EJ, Rolf M, Sonibare MA, Moody JO, Wong GK, Dessein S, Greger H, Gruber CW.

Biopolymers. 2013 Sep;100(5):438-52. doi: 10.1002/bip.22328.

30.

Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes.

Johnson MT, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, Depamphilis CW, Edger PP, Goh F, Graham S, Greiner S, Hibberd JM, Jordon-Thaden I, Kutchan TM, Leebens-Mack J, Melkonian M, Miles N, Myburg H, Patterson J, Pires JC, Ralph P, Rolf M, Sage RF, Soltis D, Soltis P, Stevenson D, Stewart CN Jr, Surek B, Thomsen CJ, Villarreal JC, Wu X, Zhang Y, Deyholos MK, Wong GK.

PLoS One. 2012;7(11):e50226. doi: 10.1371/journal.pone.0050226. Epub 2012 Nov 21.

31.

Trichodesmium--a widespread marine cyanobacterium with unusual nitrogen fixation properties.

Bergman B, Sandh G, Lin S, Larsson J, Carpenter EJ.

FEMS Microbiol Rev. 2013 May;37(3):286-302. doi: 10.1111/j.1574-6976.2012.00352.x. Epub 2012 Sep 20. Review.

32.

Diverse and highly active diazotrophic assemblages inhabit ephemerally wetted soils of the Antarctic Dry Valleys.

Niederberger TD, Sohm JA, Tirindelli J, Gunderson T, Capone DG, Carpenter EJ, Cary SC.

FEMS Microbiol Ecol. 2012 Nov;82(2):376-90. doi: 10.1111/j.1574-6941.2012.01390.x. Epub 2012 May 21.

33.

A genome triplication associated with early diversification of the core eudicots.

Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Zhang Y, Carpenter EJ, Deyholos MK, Kutchan TM, Chanderbali AS, Soltis PS, Stevenson DW, McCombie R, Pires JC, Wong GK, Soltis DE, Depamphilis CW.

Genome Biol. 2012 Jan 26;13(1):R3. doi: 10.1186/gb-2012-13-1-r3.

34.

Amazon River enhances diazotrophy and carbon sequestration in the tropical North Atlantic Ocean.

Subramaniam A, Yager PL, Carpenter EJ, Mahaffey C, Björkman K, Cooley S, Kustka AB, Montoya JP, Sañudo-Wilhelmy SA, Shipe R, Capone DG.

Proc Natl Acad Sci U S A. 2008 Jul 29;105(30):10460-5. doi: 10.1073/pnas.0710279105. Epub 2008 Jul 22.

35.

Homology modeling of tubulin: influence predictions for microtubule's biophysical properties.

Carpenter EJ, Huzil JT, Ludueña RF, Tuszynski JA.

Eur Biophys J. 2006 Dec;36(1):35-43. Epub 2006 Aug 29.

PMID:
16941085
36.

The evolution of the structure of tubulin and its potential consequences for the role and function of microtubules in cells and embryos.

Tuszynski JA, Carpenter EJ, Huzil JT, Malinski W, Luchko T, Luduena RF.

Int J Dev Biol. 2006;50(2-3):341-58.

37.

The impact of surface-adsorbed phosphorus on phytoplankton Redfield stoichiometry.

Sañudo-Wilhelmy SA, Tovar-Sanchez A, Fu FX, Capone DG, Carpenter EJ, Hutchins DA.

Nature. 2004 Dec 16;432(7019):897-901.

PMID:
15602560
38.

Molecular cloning and antiserum development of cyclin box in the brown tide alga Aureococcus anophagefferens.

Lin S, Magaletti E, Carpenter EJ.

Mar Biotechnol (NY). 2000 Nov;2(6):577-86.

PMID:
14961181
39.

N2 fixation by unicellular bacterioplankton from the Atlantic and Pacific oceans: phylogeny and in situ rates.

Falcón LI, Carpenter EJ, Cipriano F, Bergman B, Capone DG.

Appl Environ Microbiol. 2004 Feb;70(2):765-70.

40.

Non-Gaussian statistics of the vibrational fluctuations of myoglobin.

Tuszyński JA, Carpenter EJ, Dixon JM, Engelborghs Y.

Eur Biophys J. 2004 Apr;33(2):159-66. Epub 2003 Sep 19.

PMID:
14504840
41.

Buoyancy regulation and the potential for vertical migration in the oceanic cyanobacterium trichodesmium.

Villareal TA, Carpenter EJ.

Microb Ecol. 2003 Jan;45(1):1-10. Epub 2002 Dec 17.

PMID:
12481233
42.

Diversity of diazotrophic unicellular cyanobacteria in the tropical North Atlantic Ocean.

Falcón LI, Cipriano F, Chistoserdov AY, Carpenter EJ.

Appl Environ Microbiol. 2002 Nov;68(11):5760-4.

43.

Iron and marine nitrogen fixation: progress and future directions.

Kustka A, Carpenter EJ, Sañudo-Wilhelmy SA.

Res Microbiol. 2002 Jun;153(5):255-62. Review.

PMID:
12160315
44.

Phosphorus limitation of nitrogen fixation by Trichodesmium in the central Atlantic Ocean.

Sañudo-Wilhelmy SA, Kustka AB, Gobler CJ, Hutchins DA, Yang M, Lwiza K, Burns J, Capone DG, Raven JA, Carpenter EJ.

Nature. 2001 May 3;411(6833):66-9.

PMID:
11333977
45.

Host specificity in the Richelia-diatom symbiosis revealed by hetR gene sequence analysis.

Janson S, Wouters J, Bergman B, Carpenter EJ.

Environ Microbiol. 1999 Oct;1(5):431-8.

PMID:
11207763
46.
47.

Bacterial activity in South Pole snow.

Carpenter EJ, Lin S, Capone DG.

Appl Environ Microbiol. 2000 Oct;66(10):4514-7.

48.

INTRACELLULAR CYANOBACTERIAL SYMBIONTS IN THE MARINE DIATOM CLIMACODIUM FRAUENFELDIANUM (BACILLARIOPHYCEAE).

Carpenter EJ, Janson S.

J Phycol. 2000 Jun;36(3):540-544. doi: 10.1046/j.1529-8817.2000.99163.x. Epub 2001 Dec 25.

PMID:
29544002
49.

New perspectives on nitrogen-fixing microorganisms in tropical and subtropical oceans.

Zehr JP, Carpenter EJ, Villareal TA.

Trends Microbiol. 2000 Feb;8(2):68-73. Review.

PMID:
10664599
50.

A PSTTLRE-form of cdc2-like gene in the marine microalga Dunaliella tertiolecta.

Lin S, Carpenter EJ.

Gene. 1999 Oct 18;239(1):39-48.

PMID:
10571032

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