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Impact of sequencing depth and technology on de novo RNA-Seq assembly.

Patterson J, Carpenter EJ, Zhu Z, An D, Liang X, Geng C, Drmanac R, Wong GK.

BMC Genomics. 2019 Jul 23;20(1):604. doi: 10.1186/s12864-019-5965-x.


Flow based single cell analysis of the immune landscape distinguishes Barrett's esophagus from adjacent normal tissue.

Sen M, Hahn F, Black TA, DeMarshall M, Porter W, Snowden E, Yee SS, Tong F, Ferguson M, Fleshman EN, Nakagawa H, Falk GW, Ginsberg GG, Kochman ML, Blaesius R, Rustgi AK, Carpenter EL.

Oncotarget. 2019 Jun 4;10(38):3592-3604. eCollection 2019 Jun 4.


Mitochondrial complex I inhibitor deguelin induces metabolic reprogramming and sensitizes vemurafenib-resistant BRAFV600E mutation bearing metastatic melanoma cells.

Carpenter EL, Chagani S, Nelson D, Cassidy PB, Laws M, Ganguli-Indra G, Indra AK.

Mol Carcinog. 2019 Sep;58(9):1680-1690. doi: 10.1002/mc.23068. Epub 2019 Jun 18.


Biofilm facilitates metal accumulation onto microplastics in estuarine waters.

Richard H, Carpenter EJ, Komada T, Palmer PT, Rochman CM.

Sci Total Environ. 2019 Sep 15;683:600-608. doi: 10.1016/j.scitotenv.2019.04.331. Epub 2019 Apr 24.


Effect of ocean acidification on the nutritional quality of marine phytoplankton for copepod reproduction.

Meyers MT, Cochlan WP, Carpenter EJ, Kimmerer WJ.

PLoS One. 2019 May 20;14(5):e0217047. doi: 10.1371/journal.pone.0217047. eCollection 2019.


A de novo substitution in BCL11B leads to loss of interaction with transcriptional complexes and craniosynostosis.

Goos JAC, Vogel WK, Mlcochova H, Millard CJ, Esfandiari E, Selman WH, Calpena E, Koelling N, Carpenter EL, Swagemakers SMA, van der Spek PJ, Filtz TM, Schwabe JWR, Iwaniec UT, Mathijssen IMJ, Leid M, Twigg SRF.

Hum Mol Genet. 2019 Apr 3. pii: ddz072. doi: 10.1093/hmg/ddz072. [Epub ahead of print]


Rapid Microbial Dynamics in Response to an Induced Wetting Event in Antarctic Dry Valley Soils.

Niederberger TD, Bottos EM, Sohm JA, Gunderson T, Parker A, Coyne KJ, Capone DG, Carpenter EJ, Cary SC.

Front Microbiol. 2019 Apr 4;10:621. doi: 10.3389/fmicb.2019.00621. eCollection 2019.


Trochanteric Fractures in Young Children.

Harding RJ, Moideen AN, Carpenter EC, Thomas DP, Hemmadi S.

Pediatr Emerg Care. 2019 May;35(5):e84-e85. doi: 10.1097/PEC.0000000000001825.


Quantitative assessments reveal improved neuroscience engagement and learning through outreach.

Saravanapandian V, Sparck EM, Cheng KY, Yu F, Yaeger C, Hu T, Suthana N, Romero-Calderón R, Ghiani CA, Evans CJ, Carpenter EM, Ge W.

J Neurosci Res. 2019 Sep;97(9):1153-1162. doi: 10.1002/jnr.24429. Epub 2019 Apr 15.


Sexual Minority Women's Experiences With Sexual Identity Disclosure in Contraceptive Care.

Greene MZ, Carpenter E, Hendrick CE, Haider S, Everett BG, Higgins JA.

Obstet Gynecol. 2019 May;133(5):1012-1023. doi: 10.1097/AOG.0000000000003222.


Palatability of Goat's versus Cow's Milk: Insights from the Analysis of Eating Behavior and Gene Expression in the Appetite-Relevant Brain Circuit in Laboratory Animal Models.

Klockars A, Wood EL, Gartner SN, McColl LK, Levine AS, Carpenter EA, Prosser CG, Olszewski PK.

Nutrients. 2019 Mar 28;11(4). pii: E720. doi: 10.3390/nu11040720.


Hepatocytes direct the formation of a pro-metastatic niche in the liver.

Lee JW, Stone ML, Porrett PM, Thomas SK, Komar CA, Li JH, Delman D, Graham K, Gladney WL, Hua X, Black TA, Chien AL, Majmundar KS, Thompson JC, Yee SS, O'Hara MH, Aggarwal C, Xin D, Shaked A, Gao M, Liu D, Borad MJ, Ramanathan RK, Carpenter EL, Ji A, de Beer MC, de Beer FC, Webb NR, Beatty GL.

Nature. 2019 Mar;567(7747):249-252. doi: 10.1038/s41586-019-1004-y. Epub 2019 Mar 6.


A pharmacological master key mechanism that unlocks the selectivity filter gate in K+ channels.

Schewe M, Sun H, Mert Ü, Mackenzie A, Pike ACW, Schulz F, Constantin C, Vowinkel KS, Conrad LJ, Kiper AK, Gonzalez W, Musinszki M, Tegtmeier M, Pryde DC, Belabed H, Nazare M, de Groot BL, Decher N, Fakler B, Carpenter EP, Tucker SJ, Baukrowitz T.

Science. 2019 Feb 22;363(6429):875-880. doi: 10.1126/science.aav0569.


Influence of TP53 Mutation on Survival in Patients With Advanced EGFR-Mutant Non-Small-Cell Lung Cancer.

Aggarwal C, Davis CW, Mick R, Thompson JC, Ahmed S, Jeffries S, Bagley S, Gabriel P, Evans TL, Bauml JM, Ciunci C, Alley E, Morrissette JJD, Cohen RB, Carpenter EL, Langer CJ.

JCO Precis Oncol. 2018;2018. doi: 10.1200/PO.18.00107. Epub 2018 Aug 31.


Measurement and immunophenotyping of pleural fluid EpCAM-positive cells and clusters for the management of non-small cell lung cancer patients.

Thompson JC, Fan R, Black T, Yu GH, Savitch SL, Chien A, Yee SS, Sen M, Hwang WT, Katz SI, Feldman M, Vachani A, Carpenter EL.

Lung Cancer. 2019 Jan;127:25-33. doi: 10.1016/j.lungcan.2018.11.020. Epub 2018 Nov 19.


An integrated enrichment system to facilitate isolation and molecular characterization of single cancer cells from whole blood.

Yu L, Sa S, Wang L, Dulmage K, Bhagwat N, Yee SS, Sen M, Pletcher CH Jr, Moore JS, Saksena S, Dixon EP, Carpenter EL.

Cytometry A. 2018 Dec;93(12):1226-1233. doi: 10.1002/cyto.a.23599.


Structures of DPAGT1 Explain Glycosylation Disease Mechanisms and Advance TB Antibiotic Design.

Dong YY, Wang H, Pike ACW, Cochrane SA, Hamedzadeh S, Wyszyński FJ, Bushell SR, Royer SF, Widdick DA, Sajid A, Boshoff HI, Park Y, Lucas R, Liu WM, Lee SS, Machida T, Minall L, Mehmood S, Belaya K, Liu WW, Chu A, Shrestha L, Mukhopadhyay SMM, Strain-Damerell C, Chalk R, Burgess-Brown NA, Bibb MJ, Barry Iii CE, Robinson CV, Beeson D, Davis BG, Carpenter EP.

Cell. 2018 Nov 1;175(4):1045-1058.e16. doi: 10.1016/j.cell.2018.10.037.


Nε-carboxymethyllysine in nutritional milk formulas for infants.

Prosser CG, Carpenter EA, Hodgkinson AJ.

Food Chem. 2019 Feb 15;274:886-890. doi: 10.1016/j.foodchem.2018.09.069. Epub 2018 Sep 11.


Do Sexual Minorities Receive Appropriate Sexual and Reproductive Health Care and Counseling?

Everett BG, Higgins JA, Haider S, Carpenter E.

J Womens Health (Larchmt). 2019 Jan;28(1):53-62. doi: 10.1089/jwh.2017.6866. Epub 2018 Oct 27.


Clinical Implications of Plasma-Based Genotyping With the Delivery of Personalized Therapy in Metastatic Non-Small Cell Lung Cancer.

Aggarwal C, Thompson JC, Black TA, Katz SI, Fan R, Yee SS, Chien AL, Evans TL, Bauml JM, Alley EW, Ciunci CA, Berman AT, Cohen RB, Lieberman DB, Majmundar KS, Savitch SL, Morrissette JJD, Hwang WT, Elenitoba-Johnson KSJ, Langer CJ, Carpenter EL.

JAMA Oncol. 2019 Feb 1;5(2):173-180. doi: 10.1001/jamaoncol.2018.4305.


Digestive Responses to Fortified Cow or Goat Dairy Drinks: A Randomised Controlled Trial.

Milan AM, Hodgkinson AJ, Mitchell SM, Prodhan UK, Prosser CG, Carpenter EA, Fraser K, Cameron-Smith D.

Nutrients. 2018 Oct 12;10(10). pii: E1492. doi: 10.3390/nu10101492.


Support for Undergraduate Neuroscience at the NSF and NIH.

Carpenter EM, Henken DB.

J Undergrad Neurosci Educ. 2018 Sep 15;16(3):E39-E41. eCollection 2018 Summer. No abstract available.


A suppressive role of guanine nucleotide-binding protein subunit beta-4 inhibited by DNA methylation in the growth of anti-estrogen resistant breast cancer cells.

Wang B, Li D, Rodriguez-Juarez R, Farfus A, Storozynsky Q, Malach M, Carpenter E, Filkowski J, Lykkesfeldt AE, Kovalchuk O.

BMC Cancer. 2018 Aug 13;18(1):817. doi: 10.1186/s12885-018-4711-0.


Identification of central mechanisms underlying anorexigenic effects of intraperitoneal L-tryptophan.

Gartner SN, Klockars A, Prosser C, Carpenter EA, Levine AS, Olszewski PK.

Neuroreport. 2018 Oct 17;29(15):1293-1300. doi: 10.1097/WNR.0000000000001110.


Evaluation of a two-sample process for prevention of ABO mistransfusions in a high volume academic hospital.

Glisch C, Jawa Z, Brener A, Carpenter E, Gottschall J, Treml A, Karafin MS.

BMJ Open Qual. 2018 Jul 15;7(3):e000270. doi: 10.1136/bmjoq-2017-000270. eCollection 2018.


A dual role of miR-22 modulated by RelA/p65 in resensitizing fulvestrant-resistant breast cancer cells to fulvestrant by targeting FOXP1 and HDAC4 and constitutive acetylation of p53 at Lys382.

Wang B, Li D, Filkowski J, Rodriguez-Juarez R, Storozynsky Q, Malach M, Carpenter E, Kovalchuk O.

Oncogenesis. 2018 Jul 30;7(7):54. doi: 10.1038/s41389-018-0063-5.


Practice survey: adherence monitoring and intervention in pediatric gastroenterology and hepatology.

Maddux MH, Ricks S, Bass JA, Daniel JF, Carpenter E, Radford K.

Ther Clin Risk Manag. 2018 Jul 11;14:1227-1234. doi: 10.2147/TCRM.S159611. eCollection 2018.


Effects of Abduction Pillows on Rotator Cuff Repair: A Biomechanical Analysis.

Hawthorne JR, Carpenter EM, Lam PH, Murrell GAC.

HSS J. 2018 Jul;14(2):114-122. doi: 10.1007/s11420-017-9592-2. Epub 2017 Dec 26.


Effective Treatment of Pediatric Eating Disorders.

Ariail A, Carpenter E, Smith T, Sacco B.

Pediatr Ann. 2018 Jun 1;47(6):e250-e253. doi: 10.3928/19382359-20180517-01.


Increased Accuracy of Varus Stress Radiographs Versus Magnetic Resonance Imaging in Diagnosing Fibular Collateral Ligament Grade III Tears.

Kane PW, DePhillipo NN, Cinque ME, Moatshe G, Chahla J, Carpenter E, Provencher MT, LaPrade RF.

Arthroscopy. 2018 Jul;34(7):2230-2235. doi: 10.1016/j.arthro.2018.03.029. Epub 2018 Jun 5.


Photoprotective Properties of Isothiocyanate and Nitrile Glucosinolate Derivatives From Meadowfoam (Limnanthes alba) Against UVB Irradiation in Human Skin Equivalent.

Carpenter EL, Le MN, Miranda CL, Reed RL, Stevens JF, Indra AK, Ganguli-Indra G.

Front Pharmacol. 2018 May 15;9:477. doi: 10.3389/fphar.2018.00477. eCollection 2018.


ZMPSTE24 missense mutations that cause progeroid diseases decrease prelamin A cleavage activity and/or protein stability.

Spear ED, Hsu ET, Nie L, Carpenter EP, Hrycyna CA, Michaelis S.

Dis Model Mech. 2018 Jul 13;11(7). pii: dmm033670. doi: 10.1242/dmm.033670.


miRNA Profiling of Magnetic Nanopore-Isolated Extracellular Vesicles for the Diagnosis of Pancreatic Cancer.

Ko J, Bhagwat N, Black T, Yee SS, Na YJ, Fisher S, Kim J, Carpenter EL, Stanger BZ, Issadore D.

Cancer Res. 2018 Jul 1;78(13):3688-3697. doi: 10.1158/0008-5472.CAN-17-3703. Epub 2018 May 7.


An integrated flow cytometry-based platform for isolation and molecular characterization of circulating tumor single cells and clusters.

Bhagwat N, Dulmage K, Pletcher CH Jr, Wang L, DeMuth W, Sen M, Balli D, Yee SS, Sa S, Tong F, Yu L, Moore JS, Stanger BZ, Dixon EP, Carpenter EL.

Sci Rep. 2018 Mar 22;8(1):5035. doi: 10.1038/s41598-018-23217-5.


Factors Influencing Dental Hygienists' Decisions to Pursue Doctoral Degrees.

Carpenter E, Lazar AA, Essex G, Davis CA, Rowe DJ.

J Dent Hyg. 2018 Feb;92(1):40-50.


Intragastric preloads of l-tryptophan reduce ingestive behavior via oxytocinergic neural mechanisms in male mice.

Gartner SN, Aidney F, Klockars A, Prosser C, Carpenter EA, Isgrove K, Levine AS, Olszewski PK.

Appetite. 2018 Jun 1;125:278-286. doi: 10.1016/j.appet.2018.02.015. Epub 2018 Feb 19.


Collectively Improving Our Teaching: Attempting Biology Department-wide Professional Development in Scientific Teaching.

Owens MT, Trujillo G, Seidel SB, Harrison CD, Farrar KM, Benton HP, Blair JR, Boyer KE, Breckler JL, Burrus LW, Byrd DT, Caporale N, Carpenter EJ, Chan YM, Chen JC, Chen L, Chen LH, Chu DS, Cochlan WP, Crook RJ, Crow KD, de la Torre JR, Denetclaw WF, Dowdy LM, Franklin D, Fuse M, Goldman MA, Govindan B, Green M, Harris HE, He ZH, Ingalls SB, Ingmire P, Johnson ARB, Knight JD, LeBuhn G, Light TL, Low C, Lund L, Márquez-Magaña LM, Miller-Sims VC, Moffatt CA, Murdock H, Nusse GL, Parker VT, Pasion SG, Patterson R, Pennings PS, Ramirez JC, Ramirez RM, Riggs B, Rohlfs RV, Romeo JM, Rothman BS, Roy SW, Russo-Tait T, Sehgal RNM, Simonin KA, Spicer GS, Stillman JH, Swei A, Timpe LC, Vredenburg VT, Weinstein SL, Zink AG, Kelley LA, Domingo CR, Tanner KD.

CBE Life Sci Educ. 2018 Spring;17(1). pii: ar2. doi: 10.1187/cbe.17-06-0106. Erratum in: CBE Life Sci Educ. 2018 Spring;17 (1):.


Asymmetric Synthesis and Biological Activities of Pactamycin-Inspired Aminocyclopentitols.

Brumsted CJ, Carpenter EL, Indra AK, Mahmud T.

Org Lett. 2018 Jan 19;20(2):397-400. doi: 10.1021/acs.orglett.7b03681. Epub 2018 Jan 10.


Evaluation of 1-Nitropyrene as a Surrogate Measure for Diesel Exhaust.

Riley EA, Carpenter EE, Ramsay J, Zamzow E, Pyke C, Paulsen MH, Sheppard L, Spear TM, Seixas NS, Stephenson DJ, Simpson CD.

Ann Work Expo Health. 2018 Mar 12;62(3):339-350. doi: 10.1093/annweh/wxx111.


Annular rupture during transcatheter aortic valve replacement: novel treatment with amplatzer vascular plugs.

Alkhouli M, Carpenter E, Tarabishy A, Sengupta P.

Eur Heart J. 2018 Feb 21;39(8):714-715. doi: 10.1093/eurheartj/ehx654. No abstract available.


Ablation of epidermal RXRα in cooperation with activated CDK4 and oncogenic NRAS generates spontaneous and acute neonatal UVB induced malignant metastatic melanomas.

Chagani S, Wang R, Carpenter EL, Löhr CV, Ganguli-Indra G, Indra AK.

BMC Cancer. 2017 Nov 9;17(1):736. doi: 10.1186/s12885-017-3714-6.


The SGC beyond structural genomics: redefining the role of 3D structures by coupling genomic stratification with fragment-based discovery.

Bradley AR, Echalier A, Fairhead M, Strain-Damerell C, Brennan P, Bullock AN, Burgess-Brown NA, Carpenter EP, Gileadi O, Marsden BD, Lee WH, Yue W, Bountra C, von Delft F.

Essays Biochem. 2017 Nov 8;61(5):495-503. doi: 10.1042/EBC20170051. Print 2017 Nov 8. Review.


Family Planning for Sexual Minority Women.

Stoffel C, Carpenter E, Everett B, Higgins J, Haider S.

Semin Reprod Med. 2017 Sep;35(5):460-468. doi: 10.1055/s-0037-1604456. Epub 2017 Oct 26. Review. No abstract available.


Emerging uses of circulating tumor DNA in advanced stage non-small cell lung cancer.

Marmarelis M, Thompson JC, Aggarwal C, Evans TL, Carpenter E, Cohen RB, Langer CJ, Bauml J.

Ann Transl Med. 2017 Sep;5(18):380. doi: 10.21037/atm.2017.07.29. Review.


Combining Machine Learning and Nanofluidic Technology To Diagnose Pancreatic Cancer Using Exosomes.

Ko J, Bhagwat N, Yee SS, Ortiz N, Sahmoud A, Black T, Aiello NM, McKenzie L, O'Hara M, Redlinger C, Romeo J, Carpenter EL, Stanger BZ, Issadore D.

ACS Nano. 2017 Nov 28;11(11):11182-11193. doi: 10.1021/acsnano.7b05503. Epub 2017 Oct 17.


Nonlinear Self-Action of Light through Biological Suspensions.

Bezryadina A, Hansson T, Gautam R, Wetzel B, Siggins G, Kalmbach A, Lamstein J, Gallardo D, Carpenter EJ, Ichimura A, Morandotti R, Chen Z.

Phys Rev Lett. 2017 Aug 4;119(5):058101. doi: 10.1103/PhysRevLett.119.058101. Epub 2017 Aug 4.


Asymmetric mechanosensitivity in a eukaryotic ion channel.

Clausen MV, Jarerattanachat V, Carpenter EP, Sansom MSP, Tucker SJ.

Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):E8343-E8351. doi: 10.1073/pnas.1708990114. Epub 2017 Sep 18.


Mesozooplankton Graze on Cyanobacteria in the Amazon River Plume and Western Tropical North Atlantic.

Conroy BJ, Steinberg DK, Song B, Kalmbach A, Carpenter EJ, Foster RA.

Front Microbiol. 2017 Aug 3;8:1436. doi: 10.3389/fmicb.2017.01436. eCollection 2017.


Enumeration, Dielectrophoretic Capture, and Molecular Analysis of Circulating Tumor Cells.

Yee SS, Carpenter EL.

Methods Mol Biol. 2017;1634:193-202. doi: 10.1007/978-1-4939-7144-2_16.


A magnetic micropore chip for rapid (<1 hour) unbiased circulating tumor cell isolation and in situ RNA analysis.

Ko J, Bhagwat N, Yee SS, Black T, Redlinger C, Romeo J, O'Hara M, Raj A, Carpenter EL, Stanger BZ, Issadore D.

Lab Chip. 2017 Sep 12;17(18):3086-3096. doi: 10.1039/c7lc00703e.

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