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Items: 1 to 50 of 88

1.

Co-occurring dissolved algal toxins observed at multiple coastal sites in southern California via solid phase adsorption toxin tracking.

Smith J, Lie AAY, Seubert EL, Crowley N, Robertson G, Caron DA.

Toxicon. 2019 Dec 5;171:62-65. doi: 10.1016/j.toxicon.2019.10.005. Epub 2019 Oct 12.

PMID:
31614156
2.

Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean.

Boeuf D, Edwards BR, Eppley JM, Hu SK, Poff KE, Romano AE, Caron DA, Karl DM, DeLong EF.

Proc Natl Acad Sci U S A. 2019 Jun 11;116(24):11824-11832. doi: 10.1073/pnas.1903080116. Epub 2019 May 24.

3.

SSU-rRNA Gene Sequencing Survey of Benthic Microbial Eukaryotes from Guaymas Basin Hydrothermal Vent.

Pasulka A, Hu SK, Countway PD, Coyne KJ, Cary SC, Heidelberg KB, Caron DA.

J Eukaryot Microbiol. 2019 Jul;66(4):637-653. doi: 10.1111/jeu.12711. Epub 2019 Feb 6.

PMID:
30620427
4.

Are We Overestimating Protistan Diversity in Nature?

Caron DA, Hu SK.

Trends Microbiol. 2019 Mar;27(3):197-205. doi: 10.1016/j.tim.2018.10.009. Epub 2018 Nov 16. Review.

PMID:
30455081
5.

A decade and a half of Pseudo-nitzschia spp. and domoic acid along the coast of southern California.

Smith J, Connell P, Evans RH, Gellene AG, Howard MDA, Jones BH, Kaveggia S, Palmer L, Schnetzer A, Seegers BN, Seubert EL, Tatters AO, Caron DA.

Harmful Algae. 2018 Nov;79:87-104. doi: 10.1016/j.hal.2018.07.007. Epub 2018 Aug 10. Review.

PMID:
30420020
6.

Diversity and toxicity of Pseudo-nitzschia species in Monterey Bay: Perspectives from targeted and adaptive sampling.

Bowers HA, Ryan JP, Hayashi K, Woods AL, Marin R 3rd, Smith GJ, Hubbard KA, Doucette GJ, Mikulski CM, Gellene AG, Zhang Y, Kudela RM, Caron DA, Birch JM, Scholin CA.

Harmful Algae. 2018 Sep;78:129-141. doi: 10.1016/j.hal.2018.08.006. Epub 2018 Aug 31.

PMID:
30196920
7.

Shifting metabolic priorities among key protistan taxa within and below the euphotic zone.

Hu SK, Liu Z, Alexander H, Campbell V, Connell PE, Dyhrman ST, Heidelberg KB, Caron DA.

Environ Microbiol. 2018 Aug;20(8):2865-2879. doi: 10.1111/1462-2920.14259. Epub 2018 Jul 26.

PMID:
29708635
8.

A tale of two mixotrophic chrysophytes: Insights into the metabolisms of two Ochromonas species (Chrysophyceae) through a comparison of gene expression.

Lie AAY, Liu Z, Terrado R, Tatters AO, Heidelberg KB, Caron DA.

PLoS One. 2018 Feb 13;13(2):e0192439. doi: 10.1371/journal.pone.0192439. eCollection 2018.

9.

Ecological Patterns Among Bacteria and Microbial Eukaryotes Derived from Network Analyses in a Low-Salinity Lake.

Jones AC, Hambright KD, Caron DA.

Microb Ecol. 2018 May;75(4):917-929. doi: 10.1007/s00248-017-1087-7. Epub 2017 Nov 7.

PMID:
29110066
10.

Oceanic protists with different forms of acquired phototrophy display contrasting biogeographies and abundance.

Leles SG, Mitra A, Flynn KJ, Stoecker DK, Hansen PJ, Calbet A, McManus GB, Sanders RW, Caron DA, Not F, Hallegraeff GM, Pitta P, Raven JA, Johnson MD, Glibert PM, Våge S.

Proc Biol Sci. 2017 Aug 16;284(1860). pii: 20170664. doi: 10.1098/rspb.2017.0664.

11.

Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera.

Wilson ST, Aylward FO, Ribalet F, Barone B, Casey JR, Connell PE, Eppley JM, Ferrón S, Fitzsimmons JN, Hayes CT, Romano AE, Turk-Kubo KA, Vislova A, Armbrust EV, Caron DA, Church MJ, Zehr JP, Karl DM, DeLong EF.

Nat Microbiol. 2017 Jul 31;2:17118. doi: 10.1038/nmicrobiol.2017.118.

PMID:
28758990
12.

Microcystin Prevalence throughout Lentic Waterbodies in Coastal Southern California.

Howard MDA, Nagoda C, Kudela RM, Hayashi K, Tatters A, Caron DA, Busse L, Brown J, Sutula M, Stein ED.

Toxins (Basel). 2017 Jul 22;9(7). pii: E231. doi: 10.3390/toxins9070231.

13.

Autotrophic and heterotrophic acquisition of carbon and nitrogen by a mixotrophic chrysophyte established through stable isotope analysis.

Terrado R, Pasulka AL, Lie AA, Orphan VJ, Heidelberg KB, Caron DA.

ISME J. 2017 Sep;11(9):2022-2034. doi: 10.1038/ismej.2017.68. Epub 2017 May 19.

14.

UniEuk: Time to Speak a Common Language in Protistology!

Berney C, Ciuprina A, Bender S, Brodie J, Edgcomb V, Kim E, Rajan J, Parfrey LW, Adl S, Audic S, Bass D, Caron DA, Cochrane G, Czech L, Dunthorn M, Geisen S, Glöckner FO, Mahé F, Quast C, Kaye JZ, Simpson AGB, Stamatakis A, Del Campo J, Yilmaz P, de Vargas C.

J Eukaryot Microbiol. 2017 May;64(3):407-411. doi: 10.1111/jeu.12414. Epub 2017 Apr 21. Review.

15.

Multiple Stressors at the Land-Sea Interface: Cyanotoxins at the Land-Sea Interface in the Southern California Bight.

Tatters AO, Howard MD, Nagoda C, Busse L, Gellene AG, Caron DA.

Toxins (Basel). 2017 Mar 9;9(3). pii: E95. doi: 10.3390/toxins9030095.

16.

Effect of light and prey availability on gene expression of the mixotrophic chrysophyte, Ochromonas sp.

Lie AA, Liu Z, Terrado R, Tatters AO, Heidelberg KB, Caron DA.

BMC Genomics. 2017 Feb 14;18(1):163. doi: 10.1186/s12864-017-3549-1.

17.

Single-cell transcriptomics of small microbial eukaryotes: limitations and potential.

Liu Z, Hu SK, Campbell V, Tatters AO, Heidelberg KB, Caron DA.

ISME J. 2017 May;11(5):1282-1285. doi: 10.1038/ismej.2016.190. Epub 2017 Jan 6.

18.

Acknowledging and incorporating mixed nutrition into aquatic protistan ecology, finally.

Caron DA.

Environ Microbiol Rep. 2017 Feb;9(1):41-43. doi: 10.1111/1758-2229.12514. No abstract available.

PMID:
28019711
19.

Probing the evolution, ecology and physiology of marine protists using transcriptomics.

Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, Bharti A, Dyhrman ST, Guida SM, Heidelberg KB, Kaye JZ, Metzner J, Smith SR, Worden AZ.

Nat Rev Microbiol. 2017 Jan;15(1):6-20. doi: 10.1038/nrmicro.2016.160. Epub 2016 Nov 21. Review.

PMID:
27867198
20.

Mixotrophy in the Marine Plankton.

Stoecker DK, Hansen PJ, Caron DA, Mitra A.

Ann Rev Mar Sci. 2017 Jan 3;9:311-335. doi: 10.1146/annurev-marine-010816-060617. Epub 2016 Jul 6.

PMID:
27483121
21.

Gene expression characterizes different nutritional strategies among three mixotrophic protists.

Liu Z, Campbell V, Heidelberg KB, Caron DA.

FEMS Microbiol Ecol. 2016 Jul;92(7). pii: fiw106. doi: 10.1093/femsec/fiw106. Epub 2016 May 18.

PMID:
27194617
22.

Ocean science: The rise of Rhizaria.

Caron DA.

Nature. 2016 Apr 28;532(7600):444-5. doi: 10.1038/nature17892. Epub 2016 Apr 20. No abstract available.

PMID:
27096370
23.

Protistan diversity and activity inferred from RNA and DNA at a coastal ocean site in the eastern North Pacific.

Hu SK, Campbell V, Connell P, Gellene AG, Liu Z, Terrado R, Caron DA.

FEMS Microbiol Ecol. 2016 Apr;92(4):fiw050. doi: 10.1093/femsec/fiw050. Epub 2016 Mar 2.

PMID:
26940085
24.

Mixotrophy stirs up our understanding of marine food webs.

Caron DA.

Proc Natl Acad Sci U S A. 2016 Mar 15;113(11):2806-8. doi: 10.1073/pnas.1600718113. Epub 2016 Mar 1. No abstract available.

25.

Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation.

Liu Z, Koid AE, Terrado R, Campbell V, Caron DA, Heidelberg KB.

Front Microbiol. 2015 Jun 24;6:631. doi: 10.3389/fmicb.2015.00631. eCollection 2015.

26.

Gene expression in the mixotrophic prymnesiophyte, Prymnesium parvum, responds to prey availability.

Liu Z, Jones AC, Campbell V, Hambright KD, Heidelberg KB, Caron DA.

Front Microbiol. 2015 Apr 20;6:319. doi: 10.3389/fmicb.2015.00319. eCollection 2015.

27.

Estimating Protistan Diversity Using High-Throughput Sequencing.

Hu SK, Liu Z, Lie AA, Countway PD, Kim DY, Jones AC, Gast RJ, Cary SC, Sherr EB, Sherr BF, Caron DA.

J Eukaryot Microbiol. 2015 Sep-Oct;62(5):688-93. doi: 10.1111/jeu.12217. Epub 2015 Apr 25.

PMID:
25851049
28.

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, Cattolico RA, Collier JL, Coyne K, Davy SK, Deschamps P, Dyhrman ST, Edvardsen B, Gates RD, Gobler CJ, Greenwood SJ, Guida SM, Jacobi JL, Jakobsen KS, James ER, Jenkins B, John U, Johnson MD, Juhl AR, Kamp A, Katz LA, Kiene R, Kudryavtsev A, Leander BS, Lin S, Lovejoy C, Lynn D, Marchetti A, McManus G, Nedelcu AM, Menden-Deuer S, Miceli C, Mock T, Montresor M, Moran MA, Murray S, Nadathur G, Nagai S, Ngam PB, Palenik B, Pawlowski J, Petroni G, Piganeau G, Posewitz MC, Rengefors K, Romano G, Rumpho ME, Rynearson T, Schilling KB, Schroeder DC, Simpson AG, Slamovits CH, Smith DR, Smith GJ, Smith SR, Sosik HM, Stief P, Theriot E, Twary SN, Umale PE, Vaulot D, Wawrik B, Wheeler GL, Wilson WH, Xu Y, Zingone A, Worden AZ.

PLoS Biol. 2014 Jun 24;12(6):e1001889. doi: 10.1371/journal.pbio.1001889. eCollection 2014 Jun. No abstract available.

29.

Comparative transcriptome analysis of four prymnesiophyte algae.

Koid AE, Liu Z, Terrado R, Jones AC, Caron DA, Heidelberg KB.

PLoS One. 2014 Jun 13;9(6):e97801. doi: 10.1371/journal.pone.0097801. eCollection 2014.

30.

Development, comparison, and validation using ELISAs for the determination of domoic acid in California sea lion body fluids.

Seubert EL, Howard MD, Kudela RM, Stewart TN, Litaker RW, Evans R, Caron DA.

J AOAC Int. 2014 Mar-Apr;97(2):345-55.

PMID:
24830146
31.

Investigating microbial eukaryotic diversity from a global census: insights from a comparison of pyrotag and full-length sequences of 18S rRNA genes.

Lie AA, Liu Z, Hu SK, Jones AC, Kim DY, Countway PD, Amaral-Zettler LA, Cary SC, Sherr EB, Sherr BF, Gast RJ, Caron DA.

Appl Environ Microbiol. 2014 Jul;80(14):4363-73. doi: 10.1128/AEM.00057-14. Epub 2014 May 9.

32.

Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists.

Chow CE, Kim DY, Sachdeva R, Caron DA, Fuhrman JA.

ISME J. 2014 Apr;8(4):816-29. doi: 10.1038/ismej.2013.199. Epub 2013 Nov 7.

33.

Monthly to interannual variability of microbial eukaryote assemblages at four depths in the eastern North Pacific.

Kim DY, Countway PD, Jones AC, Schnetzer A, Yamashita W, Tung C, Caron DA.

ISME J. 2014 Mar;8(3):515-530. doi: 10.1038/ismej.2013.173. Epub 2013 Oct 31.

34.

Short- and long-term conditioning of a temperate marine diatom community to acidification and warming.

Tatters AO, Roleda MY, Schnetzer A, Fu F, Hurd CL, Boyd PW, Caron DA, Lie AA, Hoffmann LJ, Hutchins DA.

Philos Trans R Soc Lond B Biol Sci. 2013 Aug 26;368(1627):20120437. doi: 10.1098/rstb.2012.0437. Print 2013.

35.

Short- versus long-term responses to changing CO2 in a coastal dinoflagellate bloom: implications for interspecific competitive interactions and community structure.

Tatters AO, Schnetzer A, Fu F, Lie AY, Caron DA, Hutchins DA.

Evolution. 2013 Jul;67(7):1879-91. doi: 10.1111/evo.12029. Epub 2013 Jan 4.

PMID:
23815646
36.

Seasonality and disturbance: annual pattern and response of the bacterial and microbial eukaryotic assemblages in a freshwater ecosystem.

Jones AC, Liao TS, Najar FZ, Roe BA, Hambright KD, Caron DA.

Environ Microbiol. 2013 Sep;15(9):2557-72. doi: 10.1111/1462-2920.12151. Epub 2013 Jun 10.

PMID:
23750973
37.

Diversity and distributional patterns of ciliates in Guaymas Basin hydrothermal vent sediments.

Coyne KJ, Countway PD, Pilditch CA, Lee CK, Caron DA, Cary SC.

J Eukaryot Microbiol. 2013 Sep-Oct;60(5):433-47. doi: 10.1111/jeu.12051. Epub 2013 Jun 11.

PMID:
23750565
38.

Towards a molecular taxonomy for protists: benefits, risks, and applications in plankton ecology.

Caron DA.

J Eukaryot Microbiol. 2013 Jul-Aug;60(4):407-13. doi: 10.1111/jeu.12044. Epub 2013 May 14.

PMID:
23672341
39.

Seasonal and annual dynamics of harmful algae and algal toxins revealed through weekly monitoring at two coastal ocean sites off southern California, USA.

Seubert EL, Gellene AG, Howard MD, Connell P, Ragan M, Jones BH, Runyan J, Caron DA.

Environ Sci Pollut Res Int. 2013 Oct;20(10):6878-95. doi: 10.1007/s11356-012-1420-0. Epub 2013 Jan 4.

PMID:
23288675
40.

Algal toxins and reverse osmosis desalination operations: laboratory bench testing and field monitoring of domoic acid, saxitoxin, brevetoxin and okadaic acid.

Seubert EL, Trussell S, Eagleton J, Schnetzer A, Cetinić I, Lauri P, Jones BH, Caron DA.

Water Res. 2012 Dec 1;46(19):6563-73. doi: 10.1016/j.watres.2012.09.042. Epub 2012 Oct 4.

PMID:
23079130
41.

A combined sequence-based and fragment-based characterization of microbial eukaryote assemblages provides taxonomic context for the Terminal Restriction Fragment Length Polymorphism (T-RFLP) method.

Kim DY, Countway PD, Yamashita W, Caron DA.

J Microbiol Methods. 2012 Dec;91(3):527-36. doi: 10.1016/j.mimet.2012.09.026. Epub 2012 Oct 3.

PMID:
23041269
42.

QUANTITATIVE REAL-TIME POLYMERASE CHAIN REACTION FOR COCHLODINIUM FULVESCENS (DINOPHYCEAE), A HARMFUL DINOFLAGELLATE FROM CALIFORNIA COASTAL WATERS(1).

Howard MD, Jones AC, Schnetzer A, Countway PD, Tomas CR, Kudela RM, Hayashi K, Chia P, Caron DA.

J Phycol. 2012 Apr;48(2):384-93. doi: 10.1111/j.1529-8817.2012.01120.x. Epub 2012 Mar 15.

PMID:
27009728
43.

Marine protistan diversity.

Caron DA, Countway PD, Jones AC, Kim DY, Schnetzer A.

Ann Rev Mar Sci. 2012;4:467-93. Review.

PMID:
22457984
44.

Examination of the seasonal dynamics of the toxic dinoflagellate Alexandrium catenella at Redondo Beach, California, by quantitative PCR.

Garneau MÈ, Schnetzer A, Countway PD, Jones AC, Seubert EL, Caron DA.

Appl Environ Microbiol. 2011 Nov;77(21):7669-80. doi: 10.1128/AEM.06174-11. Epub 2011 Sep 16.

45.

Marine bacterial, archaeal and protistan association networks reveal ecological linkages.

Steele JA, Countway PD, Xia L, Vigil PD, Beman JM, Kim DY, Chow CE, Sachdeva R, Jones AC, Schwalbach MS, Rose JM, Hewson I, Patel A, Sun F, Caron DA, Fuhrman JA.

ISME J. 2011 Sep;5(9):1414-25. doi: 10.1038/ismej.2011.24. Epub 2011 Mar 24.

46.

Rapid shifts in the structure and composition of a protistan assemblage during bottle incubations affect estimates of total protistan species richness.

Kim DY, Countway PD, Gast RJ, Caron DA.

Microb Ecol. 2011 Aug;62(2):383-98. doi: 10.1007/s00248-011-9816-9. Epub 2011 Mar 4.

PMID:
21373815
47.

Phylogenetic affiliations of mesopelagic acantharia and acantharian-like environmental 18S rRNA genes off the southern California coast.

Gilg IC, Amaral-Zettler LA, Countway PD, Moorthi S, Schnetzer A, Caron DA.

Protist. 2010 Apr;161(2):197-211. doi: 10.1016/j.protis.2009.09.002. Epub 2009 Dec 30.

PMID:
20044311
48.

Ecological strategies of protists and their symbiotic relationships with prokaryotic microbes.

Gast RJ, Sanders RW, Caron DA.

Trends Microbiol. 2009 Dec;17(12):563-9. doi: 10.1016/j.tim.2009.09.001. Epub 2009 Oct 12. Review.

PMID:
19828317
49.

Harmful algae and their potential impacts on desalination operations off southern California.

Caron DA, Garneau ME, Seubert E, Howard MD, Darjany L, Schnetzer A, Cetinić I, Filteau G, Lauri P, Jones B, Trussell S.

Water Res. 2010 Jan;44(2):385-416. doi: 10.1016/j.watres.2009.06.051. Epub 2009 Jun 30. Review.

PMID:
19664796
50.

Defining DNA-based operational taxonomic units for microbial-eukaryote ecology.

Caron DA, Countway PD, Savai P, Gast RJ, Schnetzer A, Moorthi SD, Dennett MR, Moran DM, Jones AC.

Appl Environ Microbiol. 2009 Sep;75(18):5797-808. doi: 10.1128/AEM.00298-09. Epub 2009 Jul 10.

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