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Items: 15

1.

Independent home use of a brain-computer interface by people with amyotrophic lateral sclerosis.

Wolpaw JR, Bedlack RS, Reda DJ, Ringer RJ, Banks PG, Vaughan TM, Heckman SM, McCane LM, Carmack CS, Winden S, McFarland DJ, Sellers EW, Shi H, Paine T, Higgins DS, Lo AC, Patwa HS, Hill KJ, Huang GD, Ruff RL.

Neurology. 2018 Jul 17;91(3):e258-e267. doi: 10.1212/WNL.0000000000005812. Epub 2018 Jun 27.

PMID:
29950436
2.

STarMir Tools for Prediction of microRNA Binding Sites.

Kanoria S, Rennie W, Liu C, Carmack CS, Lu J, Ding Y.

Methods Mol Biol. 2016;1490:73-82. doi: 10.1007/978-1-4939-6433-8_6.

3.

STarMirDB: A database of microRNA binding sites.

Rennie W, Kanoria S, Liu C, Mallick B, Long D, Wolenc A, Carmack CS, Lu J, Ding Y.

RNA Biol. 2016 Jun 2;13(6):554-60. doi: 10.1080/15476286.2016.1182279.

4.

Identification of bacterial sRNA regulatory targets using ribosome profiling.

Wang J, Rennie W, Liu C, Carmack CS, Prévost K, Caron MP, Massé E, Ding Y, Wade JT.

Nucleic Acids Res. 2015 Dec 2;43(21):10308-20. doi: 10.1093/nar/gkv1158. Epub 2015 Nov 5.

5.

Effects of genetic variations on microRNA: target interactions.

Liu C, Rennie WA, Carmack CS, Kanoria S, Cheng J, Lu J, Ding Y.

Nucleic Acids Res. 2014 Sep;42(15):9543-52. doi: 10.1093/nar/gku675. Epub 2014 Jul 31.

6.

MicroRNA binding sites in C. elegans 3' UTRs.

Liu C, Rennie WA, Mallick B, Kanoria S, Long D, Wolenc A, Carmack CS, Ding Y.

RNA Biol. 2014;11(6):693-701. Epub 2014 Apr 25.

7.

STarMir: a web server for prediction of microRNA binding sites.

Rennie W, Liu C, Carmack CS, Wolenc A, Kanoria S, Lu J, Long D, Ding Y.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W114-8. doi: 10.1093/nar/gku376. Epub 2014 May 6.

8.

Brain-computer interface (BCI) evaluation in people with amyotrophic lateral sclerosis.

McCane LM, Sellers EW, McFarland DJ, Mak JN, Carmack CS, Zeitlin D, Wolpaw JR, Vaughan TM.

Amyotroph Lateral Scler Frontotemporal Degener. 2014 Jun;15(3-4):207-15. doi: 10.3109/21678421.2013.865750. Epub 2014 Feb 20.

9.

CLIP-based prediction of mammalian microRNA binding sites.

Liu C, Mallick B, Long D, Rennie WA, Wolenc A, Carmack CS, Ding Y.

Nucleic Acids Res. 2013 Aug;41(14):e138. doi: 10.1093/nar/gkt435. Epub 2013 May 22.

10.

Tumor-specific silencing of COPZ2 gene encoding coatomer protein complex subunit ζ 2 renders tumor cells dependent on its paralogous gene COPZ1.

Shtutman M, Baig M, Levina E, Hurteau G, Lim CU, Broude E, Nikiforov M, Harkins TT, Carmack CS, Ding Y, Wieland F, Buttyan R, Roninson IB.

Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12449-54. doi: 10.1073/pnas.1103842108. Epub 2011 Jul 11.

11.

Function-based gene identification using enzymatically generated normalized shRNA library and massive parallel sequencing.

Shtutman M, Maliyekkel A, Shao Y, Carmack CS, Baig M, Warholic N, Cole K, Broude EV, Harkins TT, Ding Y, Roninson IB.

Proc Natl Acad Sci U S A. 2010 Apr 20;107(16):7377-82. doi: 10.1073/pnas.1003055107. Epub 2010 Apr 5.

12.

A structural interpretation of the effect of GC-content on efficiency of RNA interference.

Chan CY, Carmack CS, Long DD, Maliyekkel A, Shao Y, Roninson IB, Ding Y.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S33. doi: 10.1186/1471-2105-10-S1-S33.

13.

mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts.

Hammell M, Long D, Zhang L, Lee A, Carmack CS, Han M, Ding Y, Ambros V.

Nat Methods. 2008 Sep;5(9):813-9. doi: 10.1038/nmeth.1247.

14.

PhyloScan: identification of transcription factor binding sites using cross-species evidence.

Carmack CS, McCue LA, Newberg LA, Lawrence CE.

Algorithms Mol Biol. 2007 Jan 23;2:1.

15.

Factors influencing the identification of transcription factor binding sites by cross-species comparison.

McCue LA, Thompson W, Carmack CS, Lawrence CE.

Genome Res. 2002 Oct;12(10):1523-32.

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