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Items: 1 to 50 of 116

1.

Longitudinal Comparison of Bacterial Diversity and Antibiotic Resistance Genes in New York City Sewage.

Joseph SM, Battaglia T, Maritz JM, Carlton JM, Blaser MJ.

mSystems. 2019 Aug 6;4(4). pii: e00327-19. doi: 10.1128/mSystems.00327-19.

2.

Patterns of protist diversity associated with raw sewage in New York City.

Maritz JM, Ten Eyck TA, Elizabeth Alter S, Carlton JM.

ISME J. 2019 Jul 9. doi: 10.1038/s41396-019-0467-z. [Epub ahead of print]

PMID:
31289345
3.

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.

Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, Díaz Muñoz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT, Nobrega FL, Reyes Muñoz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cortés P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hyöty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, O'Connell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ramírez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torres PJ, Twaddle A, Ugochi Ibekwe M, Villagra N, Wandro S, White B, Whiteley A, Whiteson KL, Wijmenga C, Zambrano MM, Zschach H, Dutilh BE.

Nat Microbiol. 2019 Oct;4(10):1727-1736. doi: 10.1038/s41564-019-0494-6. Epub 2019 Jul 8.

PMID:
31285584
4.

Dengue, chikungunya, and scrub typhus are important etiologies of non-malarial febrile illness in Rourkela, Odisha, India.

Rao PN, van Eijk AM, Choubey S, Ali SZ, Dash A, Barla P, Oraon RR, Patel G, Nandini P, Acharya S, Mohanty S, Carlton JM, Satpathi S.

BMC Infect Dis. 2019 Jul 3;19(1):572. doi: 10.1186/s12879-019-4161-6.

5.

Malaria in Meghalaya: a systematic literature review and analysis of data from the National Vector-Borne Disease Control Programme.

Kessler A, van Eijk AM, Jamir L, Walton C, Carlton JM, Albert S.

Malar J. 2018 Nov 6;17(1):411. doi: 10.1186/s12936-018-2563-3.

6.

Single-dose versus 7-day-dose metronidazole for the treatment of trichomoniasis in women: an open-label, randomised controlled trial.

Kissinger P, Muzny CA, Mena LA, Lillis RA, Schwebke JR, Beauchamps L, Taylor SN, Schmidt N, Myers L, Augostini P, Secor WE, Bradic M, Carlton JM, Martin DH.

Lancet Infect Dis. 2018 Nov;18(11):1251-1259. doi: 10.1016/S1473-3099(18)30423-7. Epub 2018 Oct 5.

PMID:
30297322
7.

Publisher Correction: Evolution of human malaria.

Carlton JM.

Nat Microbiol. 2018 Oct;3(10):1188. doi: 10.1038/s41564-018-0249-9.

PMID:
30194345
8.

Overlapping Community Compositions of Gut and Fecal Microbiomes in Lab-Reared and Field-Collected German Cockroaches.

Kakumanu ML, Maritz JM, Carlton JM, Schal C.

Appl Environ Microbiol. 2018 Aug 17;84(17). pii: e01037-18. doi: 10.1128/AEM.01037-18. Print 2018 Sep 1.

9.

Evolution of human malaria.

Carlton JM.

Nat Microbiol. 2018 Jun;3(6):642-643. doi: 10.1038/s41564-018-0170-2. No abstract available. Erratum in: Nat Microbiol. 2018 Oct;3(10):1188.

PMID:
29795536
10.

Does the common sexually transmitted parasite Trichomonas vaginalis have sex?

Bradic M, Carlton JM.

PLoS Pathog. 2018 Mar 8;14(3):e1006831. doi: 10.1371/journal.ppat.1006831. eCollection 2018 Mar. No abstract available.

11.

Malaria parasite evolution in a test tube.

Carlton JM.

Science. 2018 Jan 12;359(6372):159-160. doi: 10.1126/science.aar4189. No abstract available.

12.

Genetic Indicators of Drug Resistance in the Highly Repetitive Genome of Trichomonas vaginalis.

Bradic M, Warring SD, Tooley GE, Scheid P, Secor WE, Land KM, Huang PJ, Chen TW, Lee CC, Tang P, Sullivan SA, Carlton JM.

Genome Biol Evol. 2017 Jun 1;9(6):1658-1672. doi: 10.1093/gbe/evx110.

13.

An 18S rRNA Workflow for Characterizing Protists in Sewage, with a Focus on Zoonotic Trichomonads.

Maritz JM, Rogers KH, Rock TM, Liu N, Joseph S, Land KM, Carlton JM.

Microb Ecol. 2017 Nov;74(4):923-936. doi: 10.1007/s00248-017-0996-9. Epub 2017 May 24.

14.

Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City.

Maritz JM, Sullivan SA, Prill RJ, Aksoy E, Scheid P, Carlton JM.

PLoS One. 2017 Apr 6;12(4):e0175527. doi: 10.1371/journal.pone.0175527. eCollection 2017.

15.

A Feast of Malaria Parasite Genomes.

Carlton JM, Sullivan SA.

Cell Host Microbe. 2017 Mar 8;21(3):310-312. doi: 10.1016/j.chom.2017.02.019.

16.

Characterizing Antibody Responses to Plasmodium vivax and Plasmodium falciparum Antigens in India Using Genome-Scale Protein Microarrays.

Uplekar S, Rao PN, Ramanathapuram L, Awasthi V, Verma K, Sutton P, Ali SZ, Patel A, G SL, Ravishankaran S, Desai N, Tandel N, Choubey S, Barla P, Kanagaraj D, Eapen A, Pradhan K, Singh R, Jain A, Felgner PL, Davies DH, Carlton JM, Das J.

PLoS Negl Trop Dis. 2017 Jan 24;11(1):e0005323. doi: 10.1371/journal.pntd.0005323. eCollection 2017 Jan.

17.

Microbial Community Patterns Associated with Automated Teller Machine Keypads in New York City.

Bik HM, Maritz JM, Luong A, Shin H, Dominguez-Bello MG, Carlton JM.

mSphere. 2016 Nov 16;1(6). pii: e00226-16. eCollection 2016 Nov-Dec.

18.

The use of mosquito repellents at three sites in India with declining malaria transmission: surveys in the community and clinic.

van Eijk AM, Ramanathapuram L, Sutton PL, Peddy N, Choubey S, Mohanty S, Asokan A, Ravishankaran S, Priya GS, Johnson JA, Velayutham S, Kanagaraj D, Patel A, Desai N, Tandel N, Sullivan SA, Wassmer SC, Singh R, Pradhan K, Carlton JM, Srivasatava HC, Eapen A, Sharma SK.

Parasit Vectors. 2016 Jul 27;9(1):418. doi: 10.1186/s13071-016-1709-9.

19.

Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax.

Hupalo DN, Luo Z, Melnikov A, Sutton PL, Rogov P, Escalante A, Vallejo AF, Herrera S, Arévalo-Herrera M, Fan Q, Wang Y, Cui L, Lucas CM, Durand S, Sanchez JF, Baldeviano GC, Lescano AG, Laman M, Barnadas C, Barry A, Mueller I, Kazura JW, Eapen A, Kanagaraj D, Valecha N, Ferreira MU, Roobsoong W, Nguitragool W, Sattabonkot J, Gamboa D, Kosek M, Vinetz JM, González-Cerón L, Birren BW, Neafsey DE, Carlton JM.

Nat Genet. 2016 Aug;48(8):953-8. doi: 10.1038/ng.3588. Epub 2016 Jun 27.

20.

Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics.

Afshinnekoo E, Meydan C, Chowdhury S, Jaroudi D, Boyer C, Bernstein N, Maritz JM, Reeves D, Gandara J, Chhangawala S, Ahsanuddin S, Simmons A, Nessel T, Sundaresh B, Pereira E, Jorgensen E, Kolokotronis SO, Kirchberger N, Garcia I, Gandara D, Dhanraj S, Nawrin T, Saletore Y, Alexander N, Vijay P, Hénaff EM, Zumbo P, Walsh M, O'Mullan GD, Tighe S, Dudley JT, Dunaif A, Ennis S, O'Halloran E, Magalhaes TR, Boone B, Jones AL, Muth TR, Paolantonio KS, Alter E, Schadt EE, Garbarino J, Prill RJ, Carlton JM, Levy S, Mason CE.

Cell Syst. 2015 Jul 29;1(1):97-97.e3. doi: 10.1016/j.cels.2015.07.006. Epub 2015 Jul 29. No abstract available.

21.

Modern Methods for Delineating Metagenomic Complexity.

Afshinnekoo E, Meydan C, Chowdhury S, Jaroudi D, Boyer C, Bernstein N, Maritz JM, Reeves D, Gandara J, Chhangawala S, Ahsanuddin S, Simmons A, Nessel T, Sundaresh B, Pereira E, Jorgensen E, Kolokotronis SO, Kirchberger N, Garcia I, Gandara D, Dhanraj S, Nawrin T, Saletore Y, Alexander N, Vijay P, Hénaff EM, Zumbo P, Walsh M, O'Mullan GD, Tighe S, Dudley JT, Dunaif A, Ennis S, O'Halloran E, Magalhaes TR, Boone B, Jones AL, Muth TR, Paolantonio KS, Alter E, Schadt EE, Garbarino J, Prill RJ, Carlton JM, Levy S, Mason CE.

Cell Syst. 2015 Jul 29;1(1):6-7. doi: 10.1016/j.cels.2015.07.007. Epub 2015 Jul 29. No abstract available.

22.

A Method for Amplicon Deep Sequencing of Drug Resistance Genes in Plasmodium falciparum Clinical Isolates from India.

Rao PN, Uplekar S, Kayal S, Mallick PK, Bandyopadhyay N, Kale S, Singh OP, Mohanty A, Mohanty S, Wassmer SC, Carlton JM.

J Clin Microbiol. 2016 Jun;54(6):1500-1511. doi: 10.1128/JCM.00235-16. Epub 2016 Mar 23.

23.

Comparative assessment on the prevalence of mutations in the Plasmodium falciparum drug-resistant genes in two different ecotypes of Odisha state, India.

Kar NP, Chauhan K, Nanda N, Kumar A, Carlton JM, Das A.

Infect Genet Evol. 2016 Jul;41:47-55. doi: 10.1016/j.meegid.2016.03.014. Epub 2016 Mar 15.

24.

Characterizing the genetic diversity of the monkey malaria parasite Plasmodium cynomolgi.

Sutton PL, Luo Z, Divis PCS, Friedrich VK, Conway DJ, Singh B, Barnwell JW, Carlton JM, Sullivan SA.

Infect Genet Evol. 2016 Jun;40:243-252. doi: 10.1016/j.meegid.2016.03.009. Epub 2016 Mar 14.

25.

What is the value of reactive case detection in malaria control? A case-study in India and a systematic review.

van Eijk AM, Ramanathapuram L, Sutton PL, Kanagaraj D, Sri Lakshmi Priya G, Ravishankaran S, Asokan A, Tandel N, Patel A, Desai N, Singh R, Sullivan SA, Carlton JM, Srivastava HC, Eapen A.

Malar J. 2016 Feb 6;15:67. doi: 10.1186/s12936-016-1120-1. Review.

26.

Glycophorins, Blood Groups, and Protection from Severe Malaria.

Wassmer SC, Carlton JM.

Trends Parasitol. 2016 Jan;32(1):5-7. doi: 10.1016/j.pt.2015.11.006. Epub 2015 Nov 21.

27.

Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics.

Afshinnekoo E, Meydan C, Chowdhury S, Jaroudi D, Boyer C, Bernstein N, Maritz JM, Reeves D, Gandara J, Chhangawala S, Ahsanuddin S, Simmons A, Nessel T, Sundaresh B, Pereira E, Jorgensen E, Kolokotronis SO, Kirchberger N, Garcia I, Gandara D, Dhanraj S, Nawrin T, Saletore Y, Alexander N, Vijay P, Hénaff EM, Zumbo P, Walsh M, O'Mullan GD, Tighe S, Dudley JT, Dunaif A, Ennis S, O'Halloran E, Magalhaes TR, Boone B, Jones AL, Muth TR, Paolantonio KS, Alter E, Schadt EE, Garbarino J, Prill RJ, Carlton JM, Levy S, Mason CE.

Cell Syst. 2015 Jul 29;1(1):72-87. Epub 2015 Mar 3.

28.

Malaria Molecular Epidemiology: Lessons from the International Centers of Excellence for Malaria Research Network.

Escalante AA, Ferreira MU, Vinetz JM, Volkman SK, Cui L, Gamboa D, Krogstad DJ, Barry AE, Carlton JM, van Eijk AM, Pradhan K, Mueller I, Greenhouse B, Pacheco MA, Vallejo AF, Herrera S, Felger I.

Am J Trop Med Hyg. 2015 Sep;93(3 Suppl):79-86. doi: 10.4269/ajtmh.15-0005. Epub 2015 Aug 10.

29.

Population Genetics, Evolutionary Genomics, and Genome-Wide Studies of Malaria: A View Across the International Centers of Excellence for Malaria Research.

Carlton JM, Volkman SK, Uplekar S, Hupalo DN, Pereira Alves JM, Cui L, Donnelly M, Roos DS, Harb OS, Acosta M, Read A, Ribolla PEM, Singh OP, Valecha N, Wassmer SC, Ferreira M, Escalante AA.

Am J Trop Med Hyg. 2015 Sep;93(3 Suppl):87-98. doi: 10.4269/ajtmh.15-0049. Epub 2015 Aug 10.

30.

The biology of Plasmodium vivax explored through genomics.

Luo Z, Sullivan SA, Carlton JM.

Ann N Y Acad Sci. 2015 Apr;1342:53-61. doi: 10.1111/nyas.12708. Epub 2015 Feb 18. Review.

31.

The impact of genomics on population genetics of parasitic diseases.

Hupalo DN, Bradic M, Carlton JM.

Curr Opin Microbiol. 2015 Feb;23:49-54. doi: 10.1016/j.mib.2014.11.001. Epub 2014 Nov 20. Review.

32.

What is the importance of zoonotic trichomonads for human health?

Maritz JM, Land KM, Carlton JM, Hirt RP.

Trends Parasitol. 2014 Jul;30(7):333-41. doi: 10.1016/j.pt.2014.05.005. Epub 2014 Jun 18. Review.

PMID:
24951156
33.

A review of malaria transmission dynamics in forest ecosystems.

Kar NP, Kumar A, Singh OP, Carlton JM, Nanda N.

Parasit Vectors. 2014 Jun 9;7:265. doi: 10.1186/1756-3305-7-265. Review.

34.

The origin and diversification of the merozoite surface protein 3 (msp3) multi-gene family in Plasmodium vivax and related parasites.

Rice BL, Acosta MM, Pacheco MA, Carlton JM, Barnwell JW, Escalante AA.

Mol Phylogenet Evol. 2014 Sep;78:172-84. doi: 10.1016/j.ympev.2014.05.013. Epub 2014 May 23.

35.

The Tc1/mariner transposable element family shapes genetic variation and gene expression in the protist Trichomonas vaginalis.

Bradic M, Warring SD, Low V, Carlton JM.

Mob DNA. 2014 Apr 24;5:12. doi: 10.1186/1759-8753-5-12. eCollection 2014.

36.

Chloroquine efficacy studies confirm drug susceptibility of Plasmodium vivax in Chennai, India.

Shalini S, Chaudhuri S, Sutton PL, Mishra N, Srivastava N, David JK, Ravindran KJ, Carlton JM, Eapen A.

Malar J. 2014 Mar 31;13:129. doi: 10.1186/1475-2875-13-129.

37.

Neutral polymorphisms in putative housekeeping genes and tandem repeats unravels the population genetics and evolutionary history of Plasmodium vivax in India.

Prajapati SK, Joshi H, Carlton JM, Rizvi MA.

PLoS Negl Trop Dis. 2013 Sep 19;7(9):e2425. doi: 10.1371/journal.pntd.0002425. eCollection 2013.

38.

Microsatellite analysis of chloroquine resistance associated alleles and neutral loci reveal genetic structure of Indian Plasmodium falciparum.

Mallick PK, Sutton PL, Singh R, Singh OP, Dash AP, Singh AK, Carlton JM, Bhasin VK.

Infect Genet Evol. 2013 Oct;19:164-75. doi: 10.1016/j.meegid.2013.07.009. Epub 2013 Jul 17.

39.

Ahead of the curve: next generation estimators of drug resistance in malaria infections.

Mideo N, Kennedy DA, Carlton JM, Bailey JA, Juliano JJ, Read AF.

Trends Parasitol. 2013 Jul;29(7):321-8. doi: 10.1016/j.pt.2013.05.004. Epub 2013 Jun 5.

40.

Genetic diversity in Trichomonas vaginalis.

Meade JC, Carlton JM.

Sex Transm Infect. 2013 Sep;89(6):444-8. doi: 10.1136/sextrans-2013-051098. Epub 2013 May 23. Review.

PMID:
23702460
41.

Genetic diversity of Trichomonas vaginalis reinfection in HIV-positive women.

Conrad MD, Kissinger P, Schmidt N, Martin DH, Carlton JM.

Sex Transm Infect. 2013 Sep;89(6):473-8. doi: 10.1136/sextrans-2013-051053. Epub 2013 May 21.

42.

Genomics, population genetics and evolutionary history of Plasmodium vivax.

Carlton JM, Das A, Escalante AA.

Adv Parasitol. 2013;81:203-22. doi: 10.1016/B978-0-12-407826-0.00005-9. Review.

PMID:
23384624
43.

Getting trichy: tools and approaches to interrogating Trichomonas vaginalis in a post-genome world.

Conrad MD, Bradic M, Warring SD, Gorman AW, Carlton JM.

Trends Parasitol. 2013 Jan;29(1):17-25. doi: 10.1016/j.pt.2012.10.004. Epub 2012 Dec 5. Review.

44.

Association between Trichomonas vaginalis and vaginal bacterial community composition among reproductive-age women.

Brotman RM, Bradford LL, Conrad M, Gajer P, Ault K, Peralta L, Forney LJ, Carlton JM, Abdo Z, Ravel J.

Sex Transm Dis. 2012 Oct;39(10):807-12.

45.

Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade.

Tachibana S, Sullivan SA, Kawai S, Nakamura S, Kim HR, Goto N, Arisue N, Palacpac NM, Honma H, Yagi M, Tougan T, Katakai Y, Kaneko O, Mita T, Kita K, Yasutomi Y, Sutton PL, Shakhbatyan R, Horii T, Yasunaga T, Barnwell JW, Escalante AA, Carlton JM, Tanabe K.

Nat Genet. 2012 Sep;44(9):1051-5. doi: 10.1038/ng.2375. Epub 2012 Aug 5.

46.

The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum.

Neafsey DE, Galinsky K, Jiang RH, Young L, Sykes SM, Saif S, Gujja S, Goldberg JM, Young S, Zeng Q, Chapman SB, Dash AP, Anvikar AR, Sutton PL, Birren BW, Escalante AA, Barnwell JW, Carlton JM.

Nat Genet. 2012 Sep;44(9):1046-50. doi: 10.1038/ng.2373. Epub 2012 Aug 5.

47.

Extensive genetic diversity, unique population structure and evidence of genetic exchange in the sexually transmitted parasite Trichomonas vaginalis.

Conrad MD, Gorman AW, Schillinger JA, Fiori PL, Arroyo R, Malla N, Dubey ML, Gonzalez J, Blank S, Secor WE, Carlton JM.

PLoS Negl Trop Dis. 2012;6(3):e1573. doi: 10.1371/journal.pntd.0001573. Epub 2012 Mar 27.

48.

The complexities of malaria disease manifestations with a focus on asymptomatic malaria.

Laishram DD, Sutton PL, Nanda N, Sharma VL, Sobti RC, Carlton JM, Joshi H.

Malar J. 2012 Jan 31;11:29. doi: 10.1186/1475-2875-11-29. Review.

49.

Malaria in India: the center for the study of complex malaria in India.

Das A, Anvikar AR, Cator LJ, Dhiman RC, Eapen A, Mishra N, Nagpal BN, Nanda N, Raghavendra K, Read AF, Sharma SK, Singh OP, Singh V, Sinnis P, Srivastava HC, Sullivan SA, Sutton PL, Thomas MB, Carlton JM, Valecha N.

Acta Trop. 2012 Mar;121(3):267-73. doi: 10.1016/j.actatropica.2011.11.008. Epub 2011 Nov 28.

50.

Parasite genomics and post-genomic activities: 21st century resources for the parasite immunologist.

Brehm K, Carlton JM, Hoffmann KF.

Parasite Immunol. 2012 Feb-Mar;34(2-3):47-9. doi: 10.1111/j.1365-3024.2011.01346.x. No abstract available.

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