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Significant Publications on Infectious Diseases Pharmacotherapy in 2018.

Borjan J, Gonzales-Luna AJ, Carlson TJ, Finch NA, Mitchell AP, McDaneld PM, Phe K, Foolad F.

J Pharm Pract. 2019 Oct;32(5):546-557. doi: 10.1177/0897190019863921. Epub 2019 Jul 21.


Letter to the Editor.

Gonzales-Luna AJ, Carlson TJ.

Clin Infect Dis. 2019 May 21. pii: ciz426. doi: 10.1093/cid/ciz426. [Epub ahead of print] No abstract available.


Ridinilazole for the treatment of Clostridioides difficile infection.

Carlson TJ, Endres BT, Bassères E, Gonzales-Luna AJ, Garey KW.

Expert Opin Investig Drugs. 2019 Apr;28(4):303-310. doi: 10.1080/13543784.2019.1582640. Epub 2019 Feb 26. Review.


Open-source food: Nutrition, toxicology, and availability of wild edible greens in the East Bay.

Stark PB, Miller D, Carlson TJ, de Vasquez KR.

PLoS One. 2019 Jan 17;14(1):e0202450. doi: 10.1371/journal.pone.0202450. eCollection 2019.


In vitro and in vivo pharmacokinetic characterization of mavacamten, a first-in-class small molecule allosteric modulator of beta cardiac myosin.

Grillo MP, Erve JCL, Dick R, Driscoll JP, Haste N, Markova S, Brun P, Carlson TJ, Evanchik M.

Xenobiotica. 2019 Jun;49(6):718-733. doi: 10.1080/00498254.2018.1495856. Epub 2018 Oct 1.


Lipid production in Nannochloropsis gaditana is doubled by decreasing expression of a single transcriptional regulator.

Ajjawi I, Verruto J, Aqui M, Soriaga LB, Coppersmith J, Kwok K, Peach L, Orchard E, Kalb R, Xu W, Carlson TJ, Francis K, Konigsfeld K, Bartalis J, Schultz A, Lambert W, Schwartz AS, Brown R, Moellering ER.

Nat Biotechnol. 2017 Jul;35(7):647-652. doi: 10.1038/nbt.3865. Epub 2017 Jun 19.


Onset of barotrauma injuries related to number of pile driving strike exposures in hybrid striped bass.

Casper BM, Halvorsen MB, Carlson TJ, Popper AN.

J Acoust Soc Am. 2017 Jun;141(6):4380. doi: 10.1121/1.4984976.


Reagent-free LC-MS/MS-based pharmacokinetic quantification of polyhistidine-tagged therapeutic proteins.

Shi J, Wong JM, Ma J, Dickerson T, Hall C, Rock DA, Carlson TJ.

Bioanalysis. 2017 Feb;9(3):251-264. doi: 10.4155/bio-2016-0126. Epub 2017 Jan 18.


Effects of Exposure to the Sound from Seismic Airguns on Pallid Sturgeon and Paddlefish.

Popper AN, Gross JA, Carlson TJ, Skalski J, Young JV, Hawkins AD, Zeddies D.

PLoS One. 2016 Aug 9;11(8):e0159486. doi: 10.1371/journal.pone.0159486. eCollection 2016.


Contributed Review: Source-localization algorithms and applications using time of arrival and time difference of arrival measurements.

Li X, Deng ZD, Rauchenstein LT, Carlson TJ.

Rev Sci Instrum. 2016 Apr;87(4):041502. doi: 10.1063/1.4947001. Review.


Effects of Seismic Air Guns on Pallid Sturgeon and Paddlefish.

Popper AN, Carlson TJ, Gross JA, Hawkins AD, Zeddies D, Powell L, Young J.

Adv Exp Med Biol. 2016;875:871-8. doi: 10.1007/978-1-4939-2981-8_107.


Effects of Impulsive Pile-Driving Exposure on Fishes.

Casper BM, Carlson TJ, Halvorsen MB, Popper AN.

Adv Exp Med Biol. 2016;875:125-32. doi: 10.1007/978-1-4939-2981-8_15.


An injectable acoustic transmitter for juvenile salmon.

Deng ZD, Carlson TJ, Li H, Xiao J, Myjak MJ, Lu J, Martinez JJ, Woodley CM, Weiland MA, Eppard MB.

Sci Rep. 2015 Jan 29;5:8111. doi: 10.1038/srep08111.


In vivo regulation of gene expression and T helper type 17 differentiation by RORγt inverse agonists.

Skepner J, Trocha M, Ramesh R, Qu XA, Schmidt D, Baloglu E, Lobera M, Davis S, Nolan MA, Carlson TJ, Hill J, Ghosh S, Sundrud MS, Yang J.

Immunology. 2015 Jul;145(3):347-56. doi: 10.1111/imm.12444. Epub 2015 Apr 3.


Design and implementation of a new autonomous sensor fish to support advanced hydropower development.

Deng ZD, Lu J, Myjak MJ, Martinez JJ, Tian C, Morris SJ, Carlson TJ, Zhou D, Hou H.

Rev Sci Instrum. 2014 Nov;85(11):115001. doi: 10.1063/1.4900543.


A 3D approximate maximum likelihood solver for localization of fish implanted with acoustic transmitters.

Li X, Deng ZD, Sun Y, Martinez JJ, Fu T, McMichael GA, Carlson TJ.

Sci Rep. 2014 Nov 27;4:7215. doi: 10.1038/srep07215.


200 kHz commercial sonar systems generate lower frequency side lobes audible to some marine mammals.

Deng ZD, Southall BL, Carlson TJ, Xu J, Martinez JJ, Weiland MA, Ingraham JM.

PLoS One. 2014 Apr 15;9(4):e95315. doi: 10.1371/journal.pone.0095315. eCollection 2014.


Discovery of AMG 925, a FLT3 and CDK4 dual kinase inhibitor with preferential affinity for the activated state of FLT3.

Li Z, Wang X, Eksterowicz J, Gribble MW Jr, Alba GQ, Ayres M, Carlson TJ, Chen A, Chen X, Cho R, Connors RV, DeGraffenreid M, Deignan JT, Duquette J, Fan P, Fisher B, Fu J, Huard JN, Kaizerman J, Keegan KS, Li C, Li K, Li Y, Liang L, Liu W, Lively SE, Lo MC, Ma J, McMinn DL, Mihalic JT, Modi K, Ngo R, Pattabiraman K, Piper DE, Queva C, Ragains ML, Suchomel J, Thibault S, Walker N, Wang X, Wang Z, Wanska M, Wehn PM, Weidner MF, Zhang AJ, Zhao X, Kamb A, Wickramasinghe D, Dai K, McGee LR, Medina JC.

J Med Chem. 2014 Apr 24;57(8):3430-49. doi: 10.1021/jm500118j. Epub 2014 Apr 2.


Halofuginone-induced amino acid starvation regulates Stat3-dependent Th17 effector function and reduces established autoimmune inflammation.

Carlson TJ, Pellerin A, Djuretic IM, Trivigno C, Koralov SB, Rao A, Sundrud MS.

J Immunol. 2014 Mar 1;192(5):2167-76. doi: 10.4049/jimmunol.1302316. Epub 2014 Jan 31.


Micro-battery development for juvenile salmon acoustic telemetry system applications.

Chen H, Cartmell S, Wang Q, Lozano T, Deng ZD, Li H, Chen X, Yuan Y, Gross ME, Carlson TJ, Xiao J.

Sci Rep. 2014 Jan 21;4:3790. doi: 10.1038/srep03790.


Pro-inflammatory human Th17 cells selectively express P-glycoprotein and are refractory to glucocorticoids.

Ramesh R, Kozhaya L, McKevitt K, Djuretic IM, Carlson TJ, Quintero MA, McCauley JL, Abreu MT, Unutmaz D, Sundrud MS.

J Exp Med. 2014 Jan 13;211(1):89-104. doi: 10.1084/jem.20130301. Epub 2014 Jan 6.


Metabolism-guided discovery of a potent and orally bioavailable urea-based calcimimetic for the treatment of secondary hyperparathyroidism.

Wehn PM, Harrington PE, Carlson TJ, Davis J, Deprez P, Fotsch CH, Grillo MP, Lu JY, Morony S, Pattabiraman K, Poon SF, Reagan JD, St Jean DJ Jr, Temal T, Wang M, Yang Y, Henley C 3rd, Lively SE.

Bioorg Med Chem Lett. 2013 Dec 15;23(24):6625-8. doi: 10.1016/j.bmcl.2013.10.050. Epub 2013 Oct 31.


Recovery of barotrauma injuries resulting from exposure to pile driving sound in two sizes of hybrid striped bass.

Casper BM, Halvorsen MB, Matthews F, Carlson TJ, Popper AN.

PLoS One. 2013 Sep 11;8(9):e73844. doi: 10.1371/journal.pone.0073844. eCollection 2013.


Effects of exposure to pile driving sounds on fish inner ear tissues.

Casper BM, Smith ME, Halvorsen MB, Sun H, Carlson TJ, Popper AN.

Comp Biochem Physiol A Mol Integr Physiol. 2013 Oct;166(2):352-60. doi: 10.1016/j.cbpa.2013.07.008. Epub 2013 Jul 10.


Structure guided design of a series of sphingosine kinase (SphK) inhibitors.

Gustin DJ, Li Y, Brown ML, Min X, Schmitt MJ, Wanska M, Wang X, Connors R, Johnstone S, Cardozo M, Cheng AC, Jeffries S, Franks B, Li S, Shen S, Wong M, Wesche H, Xu G, Carlson TJ, Plant M, Morgenstern K, Rex K, Schmitt J, Coxon A, Walker N, Kayser F, Wang Z.

Bioorg Med Chem Lett. 2013 Aug 15;23(16):4608-16. doi: 10.1016/j.bmcl.2013.06.030. Epub 2013 Jun 20.


Direct and indirect lactate oxidation in trained and untrained men.

Emhoff CA, Messonnier LA, Horning MA, Fattor JA, Carlson TJ, Brooks GA.

J Appl Physiol (1985). 2013 Sep;115(6):829-38. doi: 10.1152/japplphysiol.00538.2013. Epub 2013 Jun 20.


Lactate kinetics at the lactate threshold in trained and untrained men.

Messonnier LA, Emhoff CA, Fattor JA, Horning MA, Carlson TJ, Brooks GA.

J Appl Physiol (1985). 2013 Jun;114(11):1593-602. doi: 10.1152/japplphysiol.00043.2013. Epub 2013 Apr 4.


Gluconeogenesis and hepatic glycogenolysis during exercise at the lactate threshold.

Emhoff CA, Messonnier LA, Horning MA, Fattor JA, Carlson TJ, Brooks GA.

J Appl Physiol (1985). 2013 Feb;114(3):297-306. doi: 10.1152/japplphysiol.01202.2012. Epub 2012 Dec 13.


Effects of exposure to pile-driving sounds on the lake sturgeon, Nile tilapia and hogchoker.

Halvorsen MB, Casper BM, Matthews F, Carlson TJ, Popper AN.

Proc Biol Sci. 2012 Dec 7;279(1748):4705-14. doi: 10.1098/rspb.2012.1544. Epub 2012 Oct 10.


Design parameters of a miniaturized piezoelectric underwater acoustic transmitter.

Li H, Deng ZD, Yuan Y, Carlson TJ.

Sensors (Basel). 2012;12(7):9098-109. Epub 2012 Jul 2.


Aquatic acoustic metrics interface utility for underwater sound monitoring and analysis.

Ren H, Halvorsen MB, Deng ZD, Carlson TJ.

Sensors (Basel). 2012;12(6):7438-50. doi: 10.3390/s120607438. Epub 2012 May 31.


Application of DBS sampling in combination with LC-MS/MS for pharmacokinetic evaluation of a compound with species-specific blood-to-plasma partitioning.

Xu G, Chen JS, Phadnis R, Huang T, Uyeda C, Soto M, Stouch B, Wells MC, James CA, Carlson TJ.

Bioanalysis. 2012 Aug;4(16):2037-47. doi: 10.4155/bio.12.167.


A 200-year perspective on alternative stable state theory and lake management from a biomanipulated shallow lake.

Hobbs WO, Hobbs JM, LaFrançois T, Zimmer KD, Theissen KM, Edlund MB, Michelutti N, Butler MG, Hanson MA, Carlson TJ.

Ecol Appl. 2012 Jul;22(5):1483-96.


Recovery of barotrauma injuries in Chinook salmon, Oncorhynchus tshawytscha from exposure to pile driving sound.

Casper BM, Popper AN, Matthews F, Carlson TJ, Halvorsen MB.

PLoS One. 2012;7(6):e39593. doi: 10.1371/journal.pone.0039593. Epub 2012 Jun 22.


Threshold for onset of injury in Chinook salmon from exposure to impulsive pile driving sounds.

Halvorsen MB, Casper BM, Woodley CM, Carlson TJ, Popper AN.

PLoS One. 2012;7(6):e38968. doi: 10.1371/journal.pone.0038968. Epub 2012 Jun 20.


MS(M), an efficient workflow for metabolite identification using hybrid linear ion trap Orbitrap mass spectrometer.

Cho R, Huang Y, Schwartz JC, Chen Y, Carlson TJ, Ma J.

J Am Soc Mass Spectrom. 2012 May;23(5):880-8. doi: 10.1007/s13361-012-0351-9. Epub 2012 Feb 14.


Workshop one: risk analysis.

Carlson TJ, de Jong C, Dekeling RP.

Adv Exp Med Biol. 2012;730:657-9. doi: 10.1007/978-1-4419-7311-5_149. No abstract available.


Assessment of barotrauma injury and cumulative sound exposure level in salmon after exposure to impulsive sound.

Halvorsen MB, Casper BM, Carlson TJ, Woodley CM, Popper AN.

Adv Exp Med Biol. 2012;730:235-7. doi: 10.1007/978-1-4419-7311-5_52. No abstract available.


Barotrauma in fish and barotrauma metrics.

Carlson TJ.

Adv Exp Med Biol. 2012;730:229-33. doi: 10.1007/978-1-4419-7311-5_51. No abstract available.


Design and implementation of an underwater sound recording device.

Martinez JJ, Myers JR, Carlson TJ, Deng ZD, Rohrer JS, Caviggia KA, Woodley CM, Weiland MA.

Sensors (Basel). 2011;11(9):8519-35. doi: 10.3390/s110908519. Epub 2011 Sep 1.


A cabled acoustic telemetry system for detecting and tracking juvenile salmon: part 2. Three-dimensional tracking and passage outcomes.

Deng ZD, Weiland MA, Fu T, Seim TA, LaMarche BL, Choi EY, Carlson TJ, Eppard MB.

Sensors (Basel). 2011;11(6):5661-76. doi: 10.3390/s110605661. Epub 2011 May 26.


A cabled acoustic telemetry system for detecting and tracking juvenile salmon: part 1. Engineering design and instrumentation.

Weiland MA, Deng ZD, Seim TA, LaMarche BL, Choi EY, Fu T, Carlson TJ, Thronas AI, Eppard MB.

Sensors (Basel). 2011;11(6):5645-60. doi: 10.3390/s110605645. Epub 2011 May 26.


Development of a robust and sensitive LC-MS/MS method for the determination of adenine in plasma of different species and its application to in vivo studies.

Shi J, Liu HF, Wong JM, Huang RN, Jones E, Carlson TJ.

J Pharm Biomed Anal. 2011 Dec 5;56(4):778-84. doi: 10.1016/j.jpba.2011.07.023. Epub 2011 Jul 27.


Cytokine signals through PI-3 kinase pathway modulate Th17 cytokine production by CCR6+ human memory T cells.

Wan Q, Kozhaya L, ElHed A, Ramesh R, Carlson TJ, Djuretic IM, Sundrud MS, Unutmaz D.

J Exp Med. 2011 Aug 29;208(9):1875-87. doi: 10.1084/jem.20102516. Epub 2011 Aug 8.


Discovery and molecular basis of potent noncovalent inhibitors of fatty acid amide hydrolase (FAAH).

Min X, Thibault ST, Porter AC, Gustin DJ, Carlson TJ, Xu H, Lindstrom M, Xu G, Uyeda C, Ma Z, Li Y, Kayser F, Walker NP, Wang Z.

Proc Natl Acad Sci U S A. 2011 May 3;108(18):7379-84. doi: 10.1073/pnas.1016167108. Epub 2011 Apr 18.


Identification of potent, noncovalent fatty acid amide hydrolase (FAAH) inhibitors.

Gustin DJ, Ma Z, Min X, Li Y, Hedberg C, Guimaraes C, Porter AC, Lindstrom M, Lester-Zeiner D, Xu G, Carlson TJ, Xiao S, Meleza C, Connors R, Wang Z, Kayser F.

Bioorg Med Chem Lett. 2011 Apr 15;21(8):2492-6. doi: 10.1016/j.bmcl.2011.02.052. Epub 2011 Feb 17.


IL-12- and IL-23-modulated T cells induce distinct types of EAE based on histology, CNS chemokine profile, and response to cytokine inhibition.

Kroenke MA, Carlson TJ, Andjelkovic AV, Segal BM.

J Exp Med. 2008 Jul 7;205(7):1535-41. doi: 10.1084/jem.20080159. Epub 2008 Jun 23.


Recent advances in high throughput screening for ADME properties.

Carlson TJ, Fisher MB.

Comb Chem High Throughput Screen. 2008 Mar;11(3):258-64. Review.


High confidence predictions of drug-drug interactions: predicting affinities for cytochrome P450 2C9 with multiple computational methods.

Hudelson MG, Ketkar NS, Holder LB, Carlson TJ, Peng CC, Waldher BJ, Jones JP.

J Med Chem. 2008 Feb 14;51(3):648-54. doi: 10.1021/jm701130z. Epub 2008 Jan 19.


Six-Degree-of-Freedom Sensor Fish Design and Instrumentation.

Deng Z, Carlson TJ, P J, Richmond MC.

Sensors (Basel). 2007 Dec 19;7(12):3399-3415. doi: 10.3390/s7123399.

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