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Items: 1 to 50 of 220

1.

Novel magnetic resonance technique for characterizing mesoscale structure of trabecular bone.

Nguyen C, Schlesinger KJ, James TW, James KM, Sah RL, Masuda K, Carlson JM.

R Soc Open Sci. 2018 Aug 29;5(8):180563. doi: 10.1098/rsos.180563. eCollection 2018 Aug.

2.

Extended testing with the dot-probe task increases test-retest reliability and validity.

Aday JS, Carlson JM.

Cogn Process. 2018 Aug 31. doi: 10.1007/s10339-018-0886-1. [Epub ahead of print]

PMID:
30171401
3.

Sensitivity analysis of human brain structural network construction.

Wei K, Cieslak M, Greene C, Grafton ST, Carlson JM.

Netw Neurosci. 2017 Dec 1;1(4):446-467. doi: 10.1162/NETN_a_00025. eCollection 2018 Winter.

4.

Antisense-Derived HIV-1 Cryptic Epitopes Are Not Major Drivers of Viral Evolution during the Acute Phase of Infection.

Peng BJ, Carlson JM, Liu MKP, Gao F, Goonetilleke N, McMichael AJ, Borrow P, Gilmour J, Heath SL, Hunter E, Bansal A, Goepfert PA.

J Virol. 2018 Sep 12;92(19). pii: e00711-18. doi: 10.1128/JVI.00711-18. Print 2018 Oct 1.

PMID:
30021907
5.

Sodium bicarbonate cotransporter NBCe2 gene variants increase sodium and bicarbonate transport in human renal proximal tubule cells.

Gildea JJ, Xu P, Kemp BA, Carlson JM, Tran HT, Bigler Wang D, Langouët-Astrié CJ, McGrath HE, Carey RM, Jose PA, Felder RA.

PLoS One. 2018 Apr 11;13(4):e0189464. doi: 10.1371/journal.pone.0189464. eCollection 2018.

6.

Killer cell immunoglobulin-like receptor 3DL1 variation modifies HLA-B*57 protection against HIV-1.

Martin MP, Naranbhai V, Shea PR, Qi Y, Ramsuran V, Vince N, Gao X, Thomas R, Brumme ZL, Carlson JM, Wolinsky SM, Goedert JJ, Walker BD, Segal FP, Deeks SG, Haas DW, Migueles SA, Connors M, Michael N, Fellay J, Gostick E, Llewellyn-Lacey S, Price DA, Lafont BA, Pymm P, Saunders PM, Widjaja J, Wong SC, Vivian JP, Rossjohn J, Brooks AG, Carrington M.

J Clin Invest. 2018 May 1;128(5):1903-1912. doi: 10.1172/JCI98463. Epub 2018 Apr 3.

7.

In silico analysis of antibiotic-induced Clostridium difficile infection: Remediation techniques and biological adaptations.

Jones EW, Carlson JM.

PLoS Comput Biol. 2018 Feb 16;14(2):e1006001. doi: 10.1371/journal.pcbi.1006001. eCollection 2018 Feb.

8.

'Asking' but Not 'Screening': Assessing Physicians' and Nurses' Substance-Related Clinical Behaviors.

Agley J, Carlson JM, McNelis AM, Gassman RA, Schwindt R, Crabb D, Vannerson J.

Subst Use Misuse. 2018 Sep 19;53(11):1834-1839. doi: 10.1080/10826084.2018.1438806. Epub 2018 Feb 15.

PMID:
29447544
9.

Elevated HLA-A expression impairs HIV control through inhibition of NKG2A-expressing cells.

Ramsuran V, Naranbhai V, Horowitz A, Qi Y, Martin MP, Yuki Y, Gao X, Walker-Sperling V, Del Prete GQ, Schneider DK, Lifson JD, Fellay J, Deeks SG, Martin JN, Goedert JJ, Wolinsky SM, Michael NL, Kirk GD, Buchbinder S, Haas D, Ndung'u T, Goulder P, Parham P, Walker BD, Carlson JM, Carrington M.

Science. 2018 Jan 5;359(6371):86-90. doi: 10.1126/science.aam8825. Epub 2018 Jan 4.

10.

Improving resolution of dynamic communities in human brain networks through targeted node removal.

Schlesinger KJ, Turner BO, Grafton ST, Miller MB, Carlson JM.

PLoS One. 2017 Dec 20;12(12):e0187715. doi: 10.1371/journal.pone.0187715. eCollection 2017.

11.

Structural MRI-based measures of neuroplasticity in an extended amygdala network as a target for attention bias modification treatment outcome.

Aday J, Carlson JM.

Med Hypotheses. 2017 Nov;109:6-16. doi: 10.1016/j.mehy.2017.09.002. Epub 2017 Sep 6.

PMID:
29150296
12.

Weaker HLA Footprints on HIV in the Unique and Highly Genetically Admixed Host Population of Mexico.

Soto-Nava M, Avila-Ríos S, Valenzuela-Ponce H, García-Morales C, Carlson JM, Tapia-Trejo D, Garrido-Rodriguez D, Alva-Hernández SN, García-Tellez TA, Murakami-Ogasawara A; International HIV Adaptation Collaborative, Mallal SA, John M, Brockman MA, Brumme CJ, Brumme ZL, Reyes-Teran G; HIV MexNet Group.

J Virol. 2018 Jan 2;92(2). pii: e01128-17. doi: 10.1128/JVI.01128-17. Print 2018 Jan 15.

13.

In the presence of conflicting gaze cues, fearful expression and eye-size guide attention.

Carlson JM, Aday J.

Cogn Emot. 2018 Sep;32(6):1178-1188. doi: 10.1080/02699931.2017.1391065. Epub 2017 Oct 19.

PMID:
29047315
14.

Brief Report: Selection of HIV-1 Variants With Higher Transmission Potential by 1% Tenofovir Gel Microbicide.

Ngandu NK, Carlson JM, Chopera DR, Ndabambi N, Abdool Karim Q, Abdool Karim S, Williamson C.

J Acquir Immune Defic Syndr. 2017 Sep 1;76(1):43-47. doi: 10.1097/QAI.0000000000001458.

15.

Mother-to-Child HIV Transmission Bottleneck Selects for Consensus Virus with Lower Gag-Protease-Driven Replication Capacity.

Naidoo VL, Mann JK, Noble C, Adland E, Carlson JM, Thomas J, Brumme CJ, Thobakgale-Tshabalala CF, Brumme ZL, Brockman MA, Goulder PJR, Ndung'u T.

J Virol. 2017 Aug 10;91(17). pii: e00518-17. doi: 10.1128/JVI.00518-17. Print 2017 Sep 1.

16.

Microbiome disruption and recovery in the fish Gambusia affinis following exposure to broad-spectrum antibiotic.

Carlson JM, Leonard AB, Hyde ER, Petrosino JF, Primm TP.

Infect Drug Resist. 2017 May 9;10:143-154. doi: 10.2147/IDR.S129055. eCollection 2017.

17.

PARV4 prevalence, phylogeny, immunology and coinfection with HIV, HBV and HCV in a multicentre African cohort.

Sharp CP, Gregory WF, Hattingh L, Malik A, Adland E, Daniels S, van Zyl A, Carlson JM, Wareing S, Ogwu A, Shapiro R, Riddell L, Chen F, Ndung'u T, Goulder PJR, Klenerman P, Simmonds P, Jooste P, Matthews PC.

Wellcome Open Res. 2017 Apr 7;2:26. doi: 10.12688/wellcomeopenres.11135.1.

18.

Examination of Host Phenotypes in Gambusia affinis Following Antibiotic Treatment.

Carlson JM, Chavez O, Aggarwal S, Primm TP.

J Vis Exp. 2017 Feb 22;(120). doi: 10.3791/55170.

PMID:
28287527
19.

Getting men in the room: perceptions of effective strategies to initiate men's involvement in gender-based violence prevention in a global sample.

Casey EA, Leek C, Tolman RM, Allen CT, Carlson JM.

Cult Health Sex. 2017 Sep;19(9):979-995. doi: 10.1080/13691058.2017.1281438. Epub 2017 Feb 21.

PMID:
28276920
20.

Family burden, child disability, and the adjustment of mothers caring for children with epilepsy: Role of social support and coping.

Carlson JM, Miller PA.

Epilepsy Behav. 2017 Mar;68:168-173. doi: 10.1016/j.yebeh.2017.01.013. Epub 2017 Feb 12.

PMID:
28199920
21.

Lost emotion: Disrupted brain-based tracking of dynamic affective episodes in anxiety and depression.

Carlson JM, Rubin D, Mujica-Parodi LR.

Psychiatry Res Neuroimaging. 2017 Feb 28;260:37-48. doi: 10.1016/j.pscychresns.2016.12.002. Epub 2016 Dec 7.

PMID:
28013067
22.

Individual Differences in Dynamic Functional Brain Connectivity across the Human Lifespan.

Davison EN, Turner BO, Schlesinger KJ, Miller MB, Grafton ST, Bassett DS, Carlson JM.

PLoS Comput Biol. 2016 Nov 23;12(11):e1005178. doi: 10.1371/journal.pcbi.1005178. eCollection 2016 Nov.

23.

Age-dependent changes in task-based modular organization of the human brain.

Schlesinger KJ, Turner BO, Lopez BA, Miller MB, Carlson JM.

Neuroimage. 2017 Feb 1;146:741-762. doi: 10.1016/j.neuroimage.2016.09.001. Epub 2016 Sep 3.

PMID:
27596025
24.

Impact of pre-adapted HIV transmission.

Carlson JM, Du VY, Pfeifer N, Bansal A, Tan VY, Power K, Brumme CJ, Kreimer A, DeZiel CE, Fusi N, Schaefer M, Brockman MA, Gilmour J, Price MA, Kilembe W, Haubrich R, John M, Mallal S, Shapiro R, Frater J, Harrigan PR, Ndung'u T, Allen S, Heckerman D, Sidney J, Allen TM, Goulder PJ, Brumme ZL, Hunter E, Goepfert PA.

Nat Med. 2016 Jun;22(6):606-13. doi: 10.1038/nm.4100. Epub 2016 May 16.

25.

Differences in the Selection Bottleneck between Modes of Sexual Transmission Influence the Genetic Composition of the HIV-1 Founder Virus.

Tully DC, Ogilvie CB, Batorsky RE, Bean DJ, Power KA, Ghebremichael M, Bedard HE, Gladden AD, Seese AM, Amero MA, Lane K, McGrath G, Bazner SB, Tinsley J, Lennon NJ, Henn MR, Brumme ZL, Norris PJ, Rosenberg ES, Mayer KH, Jessen H, Kosakovsky Pond SL, Walker BD, Altfeld M, Carlson JM, Allen TM.

PLoS Pathog. 2016 May 10;12(5):e1005619. doi: 10.1371/journal.ppat.1005619. eCollection 2016 May.

26.

Optimizing Real-Time Vaccine Allocation in a Stochastic SIR Model.

Nguyen C, Carlson JM.

PLoS One. 2016 Apr 4;11(4):e0152950. doi: 10.1371/journal.pone.0152950. eCollection 2016.

27.

If You Teach It, They Will Screen: Advanced Practice Nursing Students' Use of Screening and Brief Intervention in the Clinical Setting.

Agley J, McNelis AM, Carlson JM, Schwindt R, Clark CA, Kent KA, Lay K, Gassman RA, Crabb DW.

J Nurs Educ. 2016 Apr;55(4):231-5. doi: 10.3928/01484834-20160316-10.

PMID:
27023895
28.

HLA-A is a Predictor of Hepatitis B e Antigen Status in HIV-Positive African Adults.

Matthews PC, Carlson JM, Beloukas A, Malik A, Jooste P, Ogwu A, Shapiro R, Riddell L, Chen F, Luzzi G, Jesuthasan G, Jeffery K, Jojic N, Ndung'u T, Carrington M, Goulder PJ, Geretti AM, Klenerman P.

J Infect Dis. 2016 Apr 15;213(8):1248-52. doi: 10.1093/infdis/jiv592. Epub 2015 Dec 9.

29.

A strong association of human leukocyte antigen-associated Pol and Gag mutations with clinical parameters in HIV-1 subtype A/E infection.

Van Tran G, Chikata T, Carlson JM, Murakoshi H, Nguyen DH, Tamura Y, Akahoshi T, Kuse N, Sakai K, Sakai S, Cobarrubias K, Oka S, Brumme ZL, Van Nguyen K, Takiguchi M; NHTD Treatment-Naive Cohort Study Group.

AIDS. 2016 Mar 13;30(5):681-9. doi: 10.1097/QAD.0000000000000969.

PMID:
26595539
30.

Selection of an HLA-C*03:04-Restricted HIV-1 p24 Gag Sequence Variant Is Associated with Viral Escape from KIR2DL3+ Natural Killer Cells: Data from an Observational Cohort in South Africa.

Hölzemer A, Thobakgale CF, Jimenez Cruz CA, Garcia-Beltran WF, Carlson JM, van Teijlingen NH, Mann JK, Jaggernath M, Kang SG, Körner C, Chung AW, Schafer JL, Evans DT, Alter G, Walker BD, Goulder PJ, Carrington M, Hartmann P, Pertel T, Zhou R, Ndung'u T, Altfeld M.

PLoS Med. 2015 Nov 17;12(11):e1001900; discussion e1001900. doi: 10.1371/journal.pmed.1001900. eCollection 2015 Nov.

31.

Population-Level Immune-Mediated Adaptation in HIV-1 Polymerase during the North American Epidemic.

Kinloch NN, MacMillan DR, Le AQ, Cotton LA, Bangsberg DR, Buchbinder S, Carrington M, Fuchs J, Harrigan PR, Koblin B, Kushel M, Markowitz M, Mayer K, Milloy MJ, Schechter MT, Wagner T, Walker BD, Carlson JM, Poon AF, Brumme ZL.

J Virol. 2015 Nov 11;90(3):1244-58. doi: 10.1128/JVI.02353-15. Print 2016 Feb 1.

32.

Left medial orbitofrontal cortex volume correlates with skydive-elicited euphoric experience.

Carlson JM, Cha J, Fekete T, Greenberg T, Mujica-Parodi LR.

Brain Struct Funct. 2016 Nov;221(8):4269-4279. Epub 2015 Nov 7.

PMID:
26547313
33.

Acute psychological stress induces short-term variable immune response.

Breen MS, Beliakova-Bethell N, Mujica-Parodi LR, Carlson JM, Ensign WY, Woelk CH, Rana BK.

Brain Behav Immun. 2016 Mar;53:172-182. doi: 10.1016/j.bbi.2015.10.008. Epub 2015 Oct 22.

PMID:
26476140
34.

The host effects of Gambusia affinis with an antibiotic-disrupted microbiome.

Carlson JM, Hyde ER, Petrosino JF, Manage AB, Primm TP.

Comp Biochem Physiol C Toxicol Pharmacol. 2015 Dec;178:163-8. doi: 10.1016/j.cbpc.2015.10.004. Epub 2015 Oct 18.

PMID:
26475244
35.

The sodium-bicarbonate cotransporter NBCe2 (slc4a5) expressed in human renal proximal tubules shows increased apical expression under high-salt conditions.

Gildea JJ, Xu P, Carlson JM, Gaglione RT, Bigler Wang D, Kemp BA, Reyes CM, McGrath HE, Carey RM, Jose PA, Felder RA.

Am J Physiol Regul Integr Comp Physiol. 2015 Dec 1;309(11):R1447-59. doi: 10.1152/ajpregu.00150.2015. Epub 2015 Oct 7.

36.

Stick-slip instabilities in sheared granular flow: The role of friction and acoustic vibrations.

Lieou CK, Elbanna AE, Langer JS, Carlson JM.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Aug;92(2):022209. Epub 2015 Aug 24.

PMID:
26382396
37.

Enhanced Recognition of HIV-1 Cryptic Epitopes Restricted by HLA Class I Alleles Associated With a Favorable Clinical Outcome.

Bansal A, Mann T, Sterrett S, Peng BJ, Bet A, Carlson JM, Goepfert PA.

J Acquir Immune Defic Syndr. 2015 Sep 1;70(1):1-8. doi: 10.1097/QAI.0000000000000700.

38.

Prevalence and Characteristics of Hepatitis B Virus (HBV) Coinfection among HIV-Positive Women in South Africa and Botswana.

Matthews PC, Beloukas A, Malik A, Carlson JM, Jooste P, Ogwu A, Shapiro R, Riddell L, Chen F, Luzzi G, Jaggernath M, Jesuthasan G, Jeffery K, Ndung'u T, Goulder PJ, Geretti AM, Klenerman P.

PLoS One. 2015 Jul 28;10(7):e0134037. doi: 10.1371/journal.pone.0134037. eCollection 2015.

39.

Gender moderates the association between dorsal medial prefrontal cortex volume and depressive symptoms in a subclinical sample.

Carlson JM, Depetro E, Maxwell J, Harmon-Jones E, Hajcak G.

Psychiatry Res. 2015 Aug 30;233(2):285-8. doi: 10.1016/j.pscychresns.2015.06.005. Epub 2015 Jun 20.

PMID:
26166620
40.

CD8+ TCR Bias and Immunodominance in HIV-1 Infection.

Kløverpris HN, McGregor R, McLaren JE, Ladell K, Harndahl M, Stryhn A, Carlson JM, Koofhethile C, Gerritsen B, Keşmir C, Chen F, Riddell L, Luzzi G, Leslie A, Walker BD, Ndung'u T, Buus S, Price DA, Goulder PJ.

J Immunol. 2015 Jun 1;194(11):5329-45. doi: 10.4049/jimmunol.1400854. Epub 2015 Apr 24.

41.

Optimal vaccination in a stochastic epidemic model of two non-interacting populations.

Yuan EC, Alderson DL, Stromberg S, Carlson JM.

PLoS One. 2015 Feb 17;10(2):e0115826. doi: 10.1371/journal.pone.0115826. eCollection 2015.

42.

Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial.

Edlefsen PT, Rolland M, Hertz T, Tovanabutra S, Gartland AJ, deCamp AC, Magaret CA, Ahmed H, Gottardo R, Juraska M, McCoy C, Larsen BB, Sanders-Buell E, Carrico C, Menis S, Kijak GH, Bose M; RV144 Sequencing Team, Arroyo MA, O'Connell RJ, Nitayaphan S, Pitisuttithum P, Kaewkungwal J, Rerks-Ngarm S, Robb ML, Kirys T, Georgiev IS, Kwong PD, Scheffler K, Pond SL, Carlson JM, Michael NL, Schief WR, Mullins JI, Kim JH, Gilbert PB.

PLoS Comput Biol. 2015 Feb 3;11(2):e1003973. doi: 10.1371/journal.pcbi.1003973. eCollection 2015 Feb. Erratum in: PLoS Comput Biol. 2016 Jan;12(1):e1004733.

43.

The mechanism of soft tissue damage: It is all in the rub.

Curran SA, Carlson JM.

Prosthet Orthot Int. 2015 Feb;39(1):82-4. doi: 10.1177/0309364614565574. Review. Erratum in: Prosthet Orthot Int. 2015 Apr;39(2):175.

PMID:
25614504
44.

HIV-1 adaptation to HLA: a window into virus-host immune interactions.

Carlson JM, Le AQ, Shahid A, Brumme ZL.

Trends Microbiol. 2015 Apr;23(4):212-24. doi: 10.1016/j.tim.2014.12.008. Epub 2015 Jan 19. Review.

PMID:
25613992
45.

Immune screening identifies novel T cell targets encoded by antisense reading frames of HIV-1.

Berger CT, Llano A, Carlson JM, Brumme ZL, Brockman MA, Cedeño S, Harrigan PR, Kaufmann DE, Heckerman D, Meyerhans A, Brander C.

J Virol. 2015 Apr;89(7):4015-9. doi: 10.1128/JVI.03435-14. Epub 2015 Jan 14.

46.

Brain network adaptability across task states.

Davison EN, Schlesinger KJ, Bassett DS, Lynall ME, Miller MB, Grafton ST, Carlson JM.

PLoS Comput Biol. 2015 Jan 8;11(1):e1004029. doi: 10.1371/journal.pcbi.1004029. eCollection 2015 Jan.

47.

Impact of HLA-driven HIV adaptation on virulence in populations of high HIV seroprevalence.

Payne R, Muenchhoff M, Mann J, Roberts HE, Matthews P, Adland E, Hempenstall A, Huang KH, Brockman M, Brumme Z, Sinclair M, Miura T, Frater J, Essex M, Shapiro R, Walker BD, Ndung'u T, McLean AR, Carlson JM, Goulder PJ.

Proc Natl Acad Sci U S A. 2014 Dec 16;111(50):E5393-400. doi: 10.1073/pnas.1413339111. Epub 2014 Dec 1.

48.

Grain fragmentation in sheared granular flow: weakening effects, energy dissipation, and strain localization.

Lieou CK, Elbanna AE, Carlson JM.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Feb;89(2):022203. Epub 2014 Feb 24.

PMID:
25353463
49.

CD8 and CD4 epitope predictions in RV144: no strong evidence of a T-cell driven sieve effect in HIV-1 breakthrough sequences from trial participants.

Dommaraju K, Kijak G, Carlson JM, Larsen BB, Tovanabutra S, Geraghty DE, Deng W, Maust BS, Edlefsen PT, Sanders-Buell E, Ratto-Kim S, deSouza MS, Rerks-Ngarm S, Nitayaphan S, Pitisuttihum P, Kaewkungwal J, O'Connell RJ, Robb ML, Michael NL, Mullins JI, Kim JH, Rolland M.

PLoS One. 2014 Oct 28;9(10):e111334. doi: 10.1371/journal.pone.0111334. eCollection 2014.

50.

Shear flow of angular grains: acoustic effects and nonmonotonic rate dependence of volume.

Lieou CK, Elbanna AE, Langer JS, Carlson JM.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Sep;90(3):032204. Epub 2014 Sep 4.

PMID:
25314434

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