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Items: 1 to 50 of 141


Factoring Ecological, Societal, and Economic Considerations into Inoculant Development.

Bell TH, Kaminsky LM, Gugino BK, Carlson JE, Malik RJ, Hockett KL, Trexler RV.

Trends Biotechnol. 2019 Jun;37(6):572-573. doi: 10.1016/j.tibtech.2019.02.009.


NaCl-induced CsRCI2E and CsRCI2F interact with aquaporin CsPIP2;1 to reduce water transport in Camelina sativa L.

Kim HS, Park W, Lim HG, Eom S, Lee JH, Carlson JE, Ahn SJ.

Biochem Biophys Res Commun. 2019 May 21;513(1):213-218. doi: 10.1016/j.bbrc.2019.03.208. Epub 2019 Apr 4.


Hardwood Tree Genomics: Unlocking Woody Plant Biology.

Tuskan GA, Groover AT, Schmutz J, DiFazio SP, Myburg A, Grattapaglia D, Smart LB, Yin T, Aury JM, Kremer A, Leroy T, Le Provost G, Plomion C, Carlson JE, Randall J, Westbrook J, Grimwood J, Muchero W, Jacobson D, Michener JK.

Front Plant Sci. 2018 Dec 17;9:1799. doi: 10.3389/fpls.2018.01799. eCollection 2018.


Host-plant induced changes in microbial community structure and midgut gene expression in an invasive polyphage (Anoplophora glabripennis).

Scully ED, Geib SM, Mason CJ, Carlson JE, Tien M, Chen HY, Harding S, Tsai CJ, Hoover K.

Sci Rep. 2018 Jun 25;8(1):9620. doi: 10.1038/s41598-018-27476-0.


Correlated evolution between climate and suites of traits along a fast-slow continuum in the radiation of Protea.

Mitchell N, Carlson JE, Holsinger KE.

Ecol Evol. 2018 Jan 12;8(3):1853-1866. doi: 10.1002/ece3.3773. eCollection 2018 Feb.


Development of novel genic microsatellite markers from transcriptome sequencing in sugar maple (Acer saccharum Marsh.).

Harmon M, Lane T, Staton M, Coggeshall MV, Best T, Chen CC, Liang H, Zembower N, Drautz-Moses DI, Hwee YZ, Schuster SC, Schlarbaum SE, Carlson JE, Gailing O.

BMC Res Notes. 2017 Aug 8;10(1):369. doi: 10.1186/s13104-017-2653-2.


Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.).

Ćalić I, Koch J, Carey D, Addo-Quaye C, Carlson JE, Neale DB.

BMC Genomics. 2017 Jul 20;18(1):547. doi: 10.1186/s12864-017-3931-z.


High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra.

Konar A, Choudhury O, Bullis R, Fiedler L, Kruser JM, Stephens MT, Gailing O, Schlarbaum S, Coggeshall MV, Staton ME, Carlson JE, Emrich S, Romero-Severson J.

BMC Genomics. 2017 May 30;18(1):417. doi: 10.1186/s12864-017-3765-8.


Impact of a western diet on the ovarian and serum metabolome.

Dhungana S, Carlson JE, Pathmasiri W, McRitchie S, Davis M, Sumner S, Appt SE.

Maturitas. 2016 Oct;92:134-142. doi: 10.1016/j.maturitas.2016.07.008. Epub 2016 Jul 14.


The green ash transcriptome and identification of genes responding to abiotic and biotic stresses.

Lane T, Best T, Zembower N, Davitt J, Henry N, Xu Y, Koch J, Liang H, McGraw J, Schuster S, Shim D, Coggeshall MV, Carlson JE, Staton ME.

BMC Genomics. 2016 Sep 2;17:702. doi: 10.1186/s12864-016-3052-0.


Genome Sequence of Fusarium Isolate MYA-4552 from the Midgut of Anoplophora glabripennis, an Invasive, Wood-Boring Beetle.

Herr JR, Scully ED, Geib SM, Hoover K, Carlson JE, Geiser DM.

Genome Announc. 2016 Jul 21;4(4). pii: e00544-16. doi: 10.1128/genomeA.00544-16.


Maternal Early Pregnancy Serum Metabolomics Profile and Abnormal Vaginal Bleeding as Predictors of Placental Abruption: A Prospective Study.

Gelaye B, Sumner SJ, McRitchie S, Carlson JE, Ananth CV, Enquobahrie DA, Qiu C, Sorensen TK, Williams MA.

PLoS One. 2016 Jun 14;11(6):e0156755. doi: 10.1371/journal.pone.0156755. eCollection 2016.


Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing.

Staton M, Best T, Khodwekar S, Owusu S, Xu T, Xu Y, Jennings T, Cronn R, Arumuganathan AK, Coggeshall M, Gailing O, Liang H, Romero-Severson J, Schlarbaum S, Carlson JE.

PLoS One. 2015 Dec 23;10(12):e0145031. doi: 10.1371/journal.pone.0145031. eCollection 2015.


Transcriptome sequencing reveals population differentiation in gene expression linked to functional traits and environmental gradients in the South African shrub Protea repens.

Akman M, Carlson JE, Holsinger KE, Latimer AM.

New Phytol. 2016 Apr;210(1):295-309. doi: 10.1111/nph.13761. Epub 2015 Nov 30.


Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes.

Staton M, Zhebentyayeva T, Olukolu B, Fang GC, Nelson D, Carlson JE, Abbott AG.

BMC Genomics. 2015 Oct 5;16:744. doi: 10.1186/s12864-015-1942-1.


Intraspecific variation in stomatal traits, leaf traits and physiology reflects adaptation along aridity gradients in a South African shrub.

Carlson JE, Adams CA, Holsinger KE.

Ann Bot. 2016 Jan;117(1):195-207. doi: 10.1093/aob/mcv146. Epub 2015 Sep 30.


Characterization of the Transcriptome of the Xerophyte Ammopiptanthus mongolicus Leaves under Drought Stress by 454 Pyrosequencing.

Pang T, Guo L, Shim D, Cannon N, Tang S, Chen J, Xia X, Yin W, Carlson JE.

PLoS One. 2015 Aug 27;10(8):e0136495. doi: 10.1371/journal.pone.0136495. eCollection 2015. Erratum in: PLoS One. 2015;10(10):e0140412.


Extrapolating from local ecological processes to genus-wide patterns in colour polymorphism in South African Protea.

Carlson JE, Holsinger KE.

Proc Biol Sci. 2015 May 7;282(1806):20150583. doi: 10.1098/rspb.2015.0583.


Functional Traits in Parallel Evolutionary Radiations and Trait-Environment Associations in the Cape Floristic Region of South Africa.

Mitchell N, Moore TE, Mollmann HK, Carlson JE, Mocko K, Martinez-Cabrera H, Adams C, Silander JA Jr, Jones CS, Schlichting CD, Holsinger KE.

Am Nat. 2015 Apr;185(4):525-37. doi: 10.1086/680051. Epub 2015 Feb 5.


Development of genomic microsatellites in Gleditsia triacanthos (Fabaceae) using Illumina sequencing.

Owusu SA, Staton M, Jennings TN, Schlarbaum S, Coggeshall MV, Romero-Severson J, Carlson JE, Gailing O.

Appl Plant Sci. 2013 Nov 28;1(12). pii: apps.1300050. doi: 10.3732/apps.1300050. eCollection 2013 Dec.


The Camelina aquaporin CsPIP2;1 is regulated by phosphorylation at Ser273, but not at Ser277, of the C-terminus and is involved in salt- and drought-stress responses.

Jang HY, Rhee J, Carlson JE, Ahn SJ.

J Plant Physiol. 2014 Sep 15;171(15):1401-12. doi: 10.1016/j.jplph.2014.06.009. Epub 2014 Jul 5.


Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: mechanisms of the biotrophic and necrotrophic phases.

Meinhardt LW, Costa GG, Thomazella DP, Teixeira PJ, Carazzolle MF, Schuster SC, Carlson JE, Guiltinan MJ, Mieczkowski P, Farmer A, Ramaraj T, Crozier J, Davis RE, Shao J, Melnick RL, Pereira GA, Bailey BA.

BMC Genomics. 2014 Feb 27;15:164. doi: 10.1186/1471-2164-15-164.


Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle.

Scully ED, Hoover K, Carlson JE, Tien M, Geib SM.

BMC Genomics. 2013 Dec 4;14:850. doi: 10.1186/1471-2164-14-850.


Metagenomic profiling reveals lignocellulose degrading system in a microbial community associated with a wood-feeding beetle.

Scully ED, Geib SM, Hoover K, Tien M, Tringe SG, Barry KW, Glavina del Rio T, Chovatia M, Herr JR, Carlson JE.

PLoS One. 2013 Sep 4;8(9):e73827. doi: 10.1371/journal.pone.0073827. eCollection 2013.


Wood chemistry analysis and expression profiling of a poplar clone expressing a tyrosine-rich peptide.

Xu Y, Chen CF, Thomas TP, Azadi P, Diehl B, Tsai CJ, Brown N, Carlson JE, Tien M, Liang H.

Plant Cell Rep. 2013 Dec;32(12):1827-41. doi: 10.1007/s00299-013-1496-0. Epub 2013 Sep 7.


Populus euphratica: the transcriptomic response to drought stress.

Tang S, Liang H, Yan D, Zhao Y, Han X, Carlson JE, Xia X, Yin W.

Plant Mol Biol. 2013 Dec;83(6):539-57. doi: 10.1007/s11103-013-0107-3. Epub 2013 Jul 16.


Two aquaporins of Jatropha are regulated differentially during drought stress and subsequent recovery.

Jang HY, Yang SW, Carlson JE, Ku YG, Ahn SJ.

J Plant Physiol. 2013 Jul 15;170(11):1028-38. doi: 10.1016/j.jplph.2013.03.001. Epub 2013 Mar 26.


Cold stress causes rapid but differential changes in properties of plasma membrane H(+)-ATPase of camelina and rapeseed.

Kim HS, Oh JM, Luan S, Carlson JE, Ahn SJ.

J Plant Physiol. 2013 Jun 15;170(9):828-37. doi: 10.1016/j.jplph.2013.01.007. Epub 2013 Feb 8.


Developmental plasticity in Protea as an evolutionary response to environmental clines in the Cape Floristic Region.

Carlson JE, Holsinger KE.

PLoS One. 2012;7(12):e52035. doi: 10.1371/journal.pone.0052035. Epub 2012 Dec 13.


Overexpression of CONSTANS homologs CO1 and CO2 fails to alter normal reproductive onset and fall bud set in woody perennial poplar.

Hsu CY, Adams JP, No K, Liang H, Meilan R, Pechanova O, Barakat A, Carlson JE, Page GP, Yuceer C.

PLoS One. 2012;7(9):e45448. doi: 10.1371/journal.pone.0045448. Epub 2012 Sep 19.


Direct and indirect selection on floral pigmentation by pollinators and seed predators in a color polymorphic South African shrub.

Carlson JE, Holsinger KE.

Oecologia. 2013 Apr;171(4):905-19. doi: 10.1007/s00442-012-2453-2. Epub 2012 Sep 25.


The effect of historical legacy on adaptation: do closely related species respond to the environment in the same way?

Prunier R, Holsinger KE, Carlson JE.

J Evol Biol. 2012 Aug;25(8):1636-49. doi: 10.1111/j.1420-9101.2012.02548.x. Epub 2012 Jun 11.


The mitochondrial genome of Moniliophthora roreri, the frosty pod rot pathogen of cacao.

Costa GG, Cabrera OG, Tiburcio RA, Medrano FJ, Carazzolle MF, Thomazella DP, Schuster SC, Carlson JE, Guiltinan MJ, Bailey BA, Mieczkowski P, Pereira GA, Meinhardt LW.

Fungal Biol. 2012 May;116(5):551-62. doi: 10.1016/j.funbio.2012.01.008. Epub 2012 Feb 15.


Ultrasound monitoring of the setting of calcium-based bone cements.

Vlad MD, González L, Gómez S, López J, Carlson JE, Fernández E.

J Mater Sci Mater Med. 2012 Jul;23(7):1563-8. doi: 10.1007/s10856-012-4636-0. Epub 2012 Apr 8.


Chestnut resistance to the blight disease: insights from transcriptome analysis.

Barakat A, Staton M, Cheng CH, Park J, Yassin NB, Ficklin S, Yeh CC, Hebard F, Baier K, Powell W, Schuster SC, Wheeler N, Abbott A, Carlson JE, Sederoff R.

BMC Plant Biol. 2012 Mar 19;12:38. doi: 10.1186/1471-2229-12-38.


Phylogenetic Analysis of Fusarium solani Associated with the Asian Longhorned Beetle, Anoplophora glabripennis.

Geib SM, Scully ED, Jimenez-Gasco Mdel M, Carlson JE, Tien M, Hoover K.

Insects. 2012 Feb 10;3(1):141-60. doi: 10.3390/insects3010141.


Investigation of the metabolism of rufinamide and its interaction with valproate.

Williams ET, Carlson JE, Lai WG, Wong YN, Yoshimura T, Critchley DJ, Narurkar M.

Drug Metab Lett. 2011 Dec;5(4):280-9.


Comparative and phylogenomic analyses of cinnamoyl-CoA reductase and cinnamoyl-CoA-reductase-like gene family in land plants.

Barakat A, Yassin NB, Park JS, Choi A, Herr J, Carlson JE.

Plant Sci. 2011 Sep;181(3):249-57. doi: 10.1016/j.plantsci.2011.05.012. Epub 2011 May 26.


FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar.

Hsu CY, Adams JP, Kim H, No K, Ma C, Strauss SH, Drnevich J, Vandervelde L, Ellis JD, Rice BM, Wickett N, Gunter LE, Tuskan GA, Brunner AM, Page GP, Barakat A, Carlson JE, DePamphilis CW, Luthe DS, Yuceer C.

Proc Natl Acad Sci U S A. 2011 Jun 28;108(26):10756-61. doi: 10.1073/pnas.1104713108. Epub 2011 Jun 8.


A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure.

Zuccolo A, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y, Duarte J, Tang H, Ayyampalayam S, Rounsley S, Kudrna D, Paterson AH, Pires JC, Chanderbali A, Soltis DE, Chamala S, Barbazuk B, Soltis PS, Albert VA, Ma H, Mandoli D, Banks J, Carlson JE, Tomkins J, dePamphilis CW, Wing RA, Leebens-Mack J.

Genome Biol. 2011;12(5):R48. doi: 10.1186/gb-2011-12-5-r48. Epub 2011 May 27.


Comparative genomics and evolutionary analyses of the O-methyltransferase gene family in Populus.

Barakat A, Choi A, Yassin NB, Park JS, Sun Z, Carlson JE.

Gene. 2011 Jun 15;479(1-2):37-46. doi: 10.1016/j.gene.2011.02.008. Epub 2011 Feb 19.


The genome of Theobroma cacao.

Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sallet E, Schiex T, Dievart A, Kramer M, Gelley L, Shi Z, Bérard A, Viot C, Boccara M, Risterucci AM, Guignon V, Sabau X, Axtell MJ, Ma Z, Zhang Y, Brown S, Bourge M, Golser W, Song X, Clement D, Rivallan R, Tahi M, Akaza JM, Pitollat B, Gramacho K, D'Hont A, Brunel D, Infante D, Kebe I, Costet P, Wing R, McCombie WR, Guiderdoni E, Quetier F, Panaud O, Wincker P, Bocs S, Lanaud C.

Nat Genet. 2011 Feb;43(2):101-8. doi: 10.1038/ng.736. Epub 2010 Dec 26.


Plant responses to climate in the Cape Floristic Region of South Africa: evidence for adaptive differentiation in the Proteaceae.

Carlson JE, Holsinger KE, Prunier R.

Evolution. 2011 Jan;65(1):108-24. doi: 10.1111/j.1558-5646.2010.01131.x. Epub 2010 Oct 7.


Shotgun proteomic analysis of yeast-elicited California poppy (Eschscholzia californica) suspension cultures producing enhanced levels of benzophenanthridine alkaloids.

Oldham JT, Hincapie M, Rejtar T, Wall PK, Carlson JE, Lee-Parsons CW.

J Proteome Res. 2010 Sep 3;9(9):4337-45. doi: 10.1021/pr1000412.


Comparison of gene order of GIGANTEA loci in yellow-poplar, monocots, and eudicots.

Liang H, Barakat A, Schlarbaum SE, Mandoli DF, Carlson JE.

Genome. 2010 Jul;53(7):533-44. doi: 10.1139/g10-031.


Genes acquired by horizontal transfer are potentially involved in the evolution of phytopathogenicity in Moniliophthora perniciosa and Moniliophthora roreri, two of the major pathogens of cacao.

Tiburcio RA, Costa GG, Carazzolle MF, Mondego JM, Schuster SC, Carlson JE, Guiltinan MJ, Bailey BA, Mieczkowski P, Meinhardt LW, Pereira GA.

J Mol Evol. 2010 Jan;70(1):85-97. doi: 10.1007/s00239-009-9311-9. Epub 2009 Dec 23.


Why do distance limitations exist on plant-plant signaling via airborne volatiles?

Frost CJ, Mescher MC, Carlson JE, De Moraes CM.

Plant Signal Behav. 2008 Jul;3(7):466-8.

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