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Sharing SRP data to reduce environmentally associated disease and promote transdisciplinary research.

Heacock ML, Amolegbe SM, Skalla LA, Trottier BA, Carlin DJ, Henry HF, Lopez AR, Duncan CG, Lawler CP, Balshaw DM, Suk WA.

Rev Environ Health. 2020 Mar 3. pii: /j/reveh.ahead-of-print/reveh-2019-0089/reveh-2019-0089.xml. doi: 10.1515/reveh-2019-0089. [Epub ahead of print] Review.


Strategies for Network GWAS Evaluated Using Classroom Crowd Science.

Fong SH, Carlin DE, Ozturk K; 2018 UCSD Network Biology Class, Ideker T.

Cell Syst. 2019 Oct 23;9(4):414. doi: 10.1016/j.cels.2019.09.001. No abstract available.


The Importance of Community Engagement and Research Translation within the NIEHS Superfund Research Program.

Trottier BA, Carlin DJ, Heacock ML, Henry HF, Suk WA.

Int J Environ Res Public Health. 2019 Aug 23;16(17). pii: E3067. doi: 10.3390/ijerph16173067.


Nociceptor Deletion of Tsc2 Enhances Axon Regeneration by Inducing a Conditioning Injury Response in Dorsal Root Ganglia.

Carlin D, Halevi AE, Ewan EE, Moore AM, Cavalli V.

eNeuro. 2019 Jun 25;6(3). pii: ENEURO.0168-19.2019. doi: 10.1523/ENEURO.0168-19.2019. Print 2019 May/Jun.


A Fast and Flexible Framework for Network-Assisted Genomic Association.

Carlin DE, Fong SH, Qin Y, Jia T, Huang JK, Bao B, Zhang C, Ideker T.

iScience. 2019 Jun 28;16:155-161. doi: 10.1016/j.isci.2019.05.025. Epub 2019 May 24.


Strategies for Network GWAS Evaluated Using Classroom Crowd Science.

Fong SH, Carlin DE, Ozturk K; 2018 UCSD Network Biology Class, Ideker T.

Cell Syst. 2019 Apr 24;8(4):275-280. doi: 10.1016/j.cels.2019.03.013. Erratum in: Cell Syst. 2019 Oct 23;9(4):414.


Probing structure of normal and malignant prostate tissue before and after radiation therapy with luminal water fraction and diffusion-weighted MRI.

Carlin D, Orton MR, Collins D, deSouza NM.

J Magn Reson Imaging. 2019 Aug;50(2):619-627. doi: 10.1002/jmri.26597. Epub 2018 Dec 27.


Short-acquisition-time JPRESS and its application to paediatric brain tumours.

Carlin D, Babourina-Brooks B, Arvanitis TN, Wilson M, Peet AC.

MAGMA. 2019 Apr;32(2):247-258. doi: 10.1007/s10334-018-0716-6. Epub 2018 Nov 20.


Voltage-Independent SK-Channel Dysfunction Causes Neuronal Hyperexcitability in the Hippocampus of Fmr1 Knock-Out Mice.

Deng PY, Carlin D, Oh YM, Myrick LK, Warren ST, Cavalli V, Klyachko VA.

J Neurosci. 2019 Jan 2;39(1):28-43. doi: 10.1523/JNEUROSCI.1593-18.2018. Epub 2018 Nov 2.


Assessing the Economic and Societal Benefits of SRP-Funded Research.

Suk WA, Heacock ML, Trottier BA, Amolegbe SM, Avakian MD, Henry HF, Carlin DJ, Reed LG.

Environ Health Perspect. 2018 Jun 15;126(6):065002. doi: 10.1289/EHP3534. eCollection 2018 Jun.


The Emerging Potential for Network Analysis to Inform Precision Cancer Medicine.

Ozturk K, Dow M, Carlin DE, Bejar R, Carter H.

J Mol Biol. 2018 Sep 14;430(18 Pt A):2875-2899. doi: 10.1016/j.jmb.2018.06.016. Epub 2018 Jun 15. Review.


Deletion of Tsc2 in Nociceptors Reduces Target Innervation, Ion Channel Expression, and Sensitivity to Heat.

Carlin D, Golden JP, Mogha A, Samineni VK, Monk KR, Gereau RW 4th, Cavalli V.

eNeuro. 2018 May 3;5(2). pii: ENEURO.0436-17.2018. doi: 10.1523/ENEURO.0436-17.2018. eCollection 2018 Mar-Apr.


Variation of T2 relaxation times in pediatric brain tumors and their effect on metabolite quantification.

Carlin D, Babourina-Brooks B, Davies NP, Wilson M, Peet AC.

J Magn Reson Imaging. 2019 Jan;49(1):195-203. doi: 10.1002/jmri.26054. Epub 2018 Apr 26.


pyNBS: a Python implementation for network-based stratification of tumor mutations.

Huang JK, Jia T, Carlin DE, Ideker T.

Bioinformatics. 2018 Aug 15;34(16):2859-2861. doi: 10.1093/bioinformatics/bty186.


Systematic Evaluation of Molecular Networks for Discovery of Disease Genes.

Huang JK, Carlin DE, Yu MK, Zhang W, Kreisberg JF, Tamayo P, Ideker T.

Cell Syst. 2018 Apr 25;6(4):484-495.e5. doi: 10.1016/j.cels.2018.03.001. Epub 2018 Mar 28.


A multi-tool recipe to identify regions of protein-DNA binding and their influence on associated gene expression.

Carlin D, Kosnicki K, Garamszegi S, Ideker T, Thorvaldsdóttir H, Reich M, Mesirov J.

Version 2. F1000Res. 2017 Jun 6 [revised 2018 Jan 1];6:784. doi: 10.12688/f1000research.11616.2. eCollection 2017.


Prophetic Granger Causality to infer gene regulatory networks.

Carlin DE, Paull EO, Graim K, Wong CK, Bivol A, Ryabinin P, Ellrott K, Sokolov A, Stuart JM.

PLoS One. 2017 Dec 6;12(12):e0170340. doi: 10.1371/journal.pone.0170340. eCollection 2017.


Quantitative Brain MRI in Congenital Adrenal Hyperplasia: In Vivo Assessment of the Cognitive and Structural Impact of Steroid Hormones.

Webb EA, Elliott L, Carlin D, Wilson M, Hall K, Netherton J, Reed J, Barrett TG, Salwani V, Clayden JD, Arlt W, Krone N, Peet AC, Wood AG.

J Clin Endocrinol Metab. 2018 Apr 1;103(4):1330-1341. doi: 10.1210/jc.2017-01481.


The National Institute of Environmental Health Sciences Superfund Research Program: a model for multidisciplinary training of the next generation of environmental health scientists.

Carlin DJ, Henry H, Heacock M, Trottier B, Drew CH, Suk WA.

Rev Environ Health. 2018 Mar 28;33(1):53-62. doi: 10.1515/reveh-2017-0024. Review.


Network propagation in the cytoscape cyberinfrastructure.

Carlin DE, Demchak B, Pratt D, Sage E, Ideker T.

PLoS Comput Biol. 2017 Oct 12;13(10):e1005598. doi: 10.1371/journal.pcbi.1005598. eCollection 2017 Oct.


A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines.

Gönen M, Weir BA, Cowley GS, Vazquez F, Guan Y, Jaiswal A, Karasuyama M, Uzunangelov V, Wang T, Tsherniak A, Howell S, Marbach D, Hoff B, Norman TC, Airola A, Bivol A, Bunte K, Carlin D, Chopra S, Deran A, Ellrott K, Gopalacharyulu P, Graim K, Kaski S, Khan SA, Newton Y, Ng S, Pahikkala T, Paull E, Sokolov A, Tang H, Tang J, Wennerberg K, Xie Y, Zhan X, Zhu F; Broad-DREAM Community, Aittokallio T, Mamitsuka H, Stuart JM, Boehm JS, Root DE, Xiao G, Stolovitzky G, Hahn WC, Margolin AA.

Cell Syst. 2017 Nov 22;5(5):485-497.e3. doi: 10.1016/j.cels.2017.09.004. Epub 2017 Oct 4.


Elucidating Substrate Promiscuity within the FabI Enzyme Family.

Freund GS, O'Brien TE, Vinson L, Carlin DA, Yao A, Mak WS, Tagkopoulos I, Facciotti MT, Tantillo DJ, Siegel JB.

ACS Chem Biol. 2017 Sep 15;12(9):2465-2473. doi: 10.1021/acschembio.7b00400. Epub 2017 Aug 31.


Modeling of RAS complexes supports roles in cancer for less studied partners.

Engin HB, Carlin D, Pratt D, Carter H.

BMC Biophys. 2017 Aug 11;10(Suppl 1):5. doi: 10.1186/s13628-017-0037-6. eCollection 2017.


Systematic Functional Analysis of Active-Site Residues in l-Threonine Dehydrogenase from Thermoplasma volcanium.

Desjardins M, Mak WS, O'Brien TE, Carlin DA, Tantillo DJ, Siegel JB.

ACS Omega. 2017 Jul 7;2(7):3308-3314. doi: 10.1021/acsomega.7b00519. eCollection 2017 Jul 31.


Thermal stability and kinetic constants for 129 variants of a family 1 glycoside hydrolase reveal that enzyme activity and stability can be separately designed.

Carlin DA, Hapig-Ward S, Chan BW, Damrau N, Riley M, Caster RW, Bethards B, Siegel JB.

PLoS One. 2017 May 22;12(5):e0176255. doi: 10.1371/journal.pone.0176255. eCollection 2017.


Gpr126/Adgrg6 Has Schwann Cell Autonomous and Nonautonomous Functions in Peripheral Nerve Injury and Repair.

Mogha A, Harty BL, Carlin D, Joseph J, Sanchez NE, Suter U, Piao X, Cavalli V, Monk KR.

J Neurosci. 2016 Dec 7;36(49):12351-12367.


Statistical Approaches for Assessing Health Effects of Environmental Chemical Mixtures in Epidemiology: Lessons from an Innovative Workshop.

Taylor KW, Joubert BR, Braun JM, Dilworth C, Gennings C, Hauser R, Heindel JJ, Rider CV, Webster TF, Carlin DJ.

Environ Health Perspect. 2016 Dec 1;124(12):A227-A229. No abstract available.


Draft Genome Sequences of Shewanella sp. Strain UCD-FRSP16_17 and Nine Vibrio Strains Isolated from Abalone Feces.

Vater A, Agbonavbare V, Carlin DA, Carruthers GM, Chac A, Doroud L, Farris SJ, Gudzeva M, Jospin G, Kintner JA, Knauss JP, Lor Y, Pechacek R, Rohner ES, Simmons SM, Verescshagina M, Wirawan CS, Zagal L, Coil DA.

Genome Announc. 2016 Sep 15;4(5). pii: e00977-16. doi: 10.1128/genomeA.00977-16.


Phosphoproteome Integration Reveals Patient-Specific Networks in Prostate Cancer.

Drake JM, Paull EO, Graham NA, Lee JK, Smith BA, Titz B, Stoyanova T, Faltermeier CM, Uzunangelov V, Carlin DE, Fleming DT, Wong CK, Newton Y, Sudha S, Vashisht AA, Huang J, Wohlschlegel JA, Graeber TG, Witte ON, Stuart JM.

Cell. 2016 Aug 11;166(4):1041-1054. doi: 10.1016/j.cell.2016.07.007. Epub 2016 Aug 4.


Computational Introduction of Catalytic Activity into Proteins.

Bertolani SJ, Carlin DA, Siegel JB.

Methods Mol Biol. 2016;1414:213-31. doi: 10.1007/978-1-4939-3569-7_13.


Pathway-Based Genomics Prediction using Generalized Elastic Net.

Sokolov A, Carlin DE, Paull EO, Baertsch R, Stuart JM.

PLoS Comput Biol. 2016 Mar 9;12(3):e1004790. doi: 10.1371/journal.pcbi.1004790. eCollection 2016 Mar.


14th congress of combustion by-products and their health effects-origin, fate, and health effects of combustion-related air pollutants in the coming era of bio-based energy sources.

Weidemann E, Andersson PL, Bidleman T, Boman C, Carlin DJ, Collina E, Cormier SA, Gouveia-Figueira SC, Gullett BK, Johansson C, Lucas D, Lundin L, Lundstedt S, Marklund S, Nording ML, Ortuño N, Sallam AA, Schmidt FM, Jansson S.

Environ Sci Pollut Res Int. 2016 Apr;23(8):8141-59. doi: 10.1007/s11356-016-6308-y. Epub 2016 Feb 24.


Inferring causal molecular networks: empirical assessment through a community-based effort.

Hill SM, Heiser LM, Cokelaer T, Unger M, Nesser NK, Carlin DE, Zhang Y, Sokolov A, Paull EO, Wong CK, Graim K, Bivol A, Wang H, Zhu F, Afsari B, Danilova LV, Favorov AV, Lee WS, Taylor D, Hu CW, Long BL, Noren DP, Bisberg AJ; HPN-DREAM Consortium, Mills GB, Gray JW, Kellen M, Norman T, Friend S, Qutub AA, Fertig EJ, Guan Y, Song M, Stuart JM, Spellman PT, Koeppl H, Stolovitzky G, Saez-Rodriguez J, Mukherjee S.

Nat Methods. 2016 Apr;13(4):310-8. doi: 10.1038/nmeth.3773. Epub 2016 Feb 22.


Kinetic Characterization of 100 Glycoside Hydrolase Mutants Enables the Discovery of Structural Features Correlated with Kinetic Constants.

Carlin DA, Caster RW, Wang X, Betzenderfer SA, Chen CX, Duong VM, Ryklansky CV, Alpekin A, Beaumont N, Kapoor H, Kim N, Mohabbot H, Pang B, Teel R, Whithaus L, Tagkopoulos I, Siegel JB.

PLoS One. 2016 Jan 27;11(1):e0147596. doi: 10.1371/journal.pone.0147596. eCollection 2016.


Arsenic and Environmental Health: State of the Science and Future Research Opportunities.

Carlin DJ, Naujokas MF, Bradham KD, Cowden J, Heacock M, Henry HF, Lee JS, Thomas DJ, Thompson C, Tokar EJ, Waalkes MP, Birnbaum LS, Suk WA.

Environ Health Perspect. 2016 Jul;124(7):890-9. doi: 10.1289/ehp.1510209. Epub 2015 Nov 20. Review.


Current Research and Opportunities to Address Environmental Asbestos Exposures.

Carlin DJ, Larson TC, Pfau JC, Gavett SH, Shukla A, Miller A, Hines R.

Environ Health Perspect. 2015 Aug;123(8):A194-7. doi: 10.1289/ehp.1409662.


Assessing the carcinogenic potential of low-dose exposures to chemical mixtures in the environment: the challenge ahead.

Goodson WH 3rd, Lowe L, Carpenter DO, Gilbertson M, Manaf Ali A, Lopez de Cerain Salsamendi A, Lasfar A, Carnero A, Azqueta A, Amedei A, Charles AK, Collins AR, Ward A, Salzberg AC, Colacci A, Olsen AK, Berg A, Barclay BJ, Zhou BP, Blanco-Aparicio C, Baglole CJ, Dong C, Mondello C, Hsu CW, Naus CC, Yedjou C, Curran CS, Laird DW, Koch DC, Carlin DJ, Felsher DW, Roy D, Brown DG, Ratovitski E, Ryan EP, Corsini E, Rojas E, Moon EY, Laconi E, Marongiu F, Al-Mulla F, Chiaradonna F, Darroudi F, Martin FL, Van Schooten FJ, Goldberg GS, Wagemaker G, Nangami GN, Calaf GM, Williams G, Wolf GT, Koppen G, Brunborg G, Lyerly HK, Krishnan H, Ab Hamid H, Yasaei H, Sone H, Kondoh H, Salem HK, Hsu HY, Park HH, Koturbash I, Miousse IR, Scovassi AI, Klaunig JE, Vondráček J, Raju J, Roman J, Wise JP Sr, Whitfield JR, Woodrick J, Christopher JA, Ochieng J, Martinez-Leal JF, Weisz J, Kravchenko J, Sun J, Prudhomme KR, Narayanan KB, Cohen-Solal KA, Moorwood K, Gonzalez L, Soucek L, Jian L, D'Abronzo LS, Lin LT, Li L, Gulliver L, McCawley LJ, Memeo L, Vermeulen L, Leyns L, Zhang L, Valverde M, Khatami M, Romano MF, Chapellier M, Williams MA, Wade M, Manjili MH, Lleonart ME, Xia M, Gonzalez MJ, Karamouzis MV, Kirsch-Volders M, Vaccari M, Kuemmerle NB, Singh N, Cruickshanks N, Kleinstreuer N, van Larebeke N, Ahmed N, Ogunkua O, Krishnakumar PK, Vadgama P, Marignani PA, Ghosh PM, Ostrosky-Wegman P, Thompson PA, Dent P, Heneberg P, Darbre P, Sing Leung P, Nangia-Makker P, Cheng QS, Robey RB, Al-Temaimi R, Roy R, Andrade-Vieira R, Sinha RK, Mehta R, Vento R, Di Fiore R, Ponce-Cusi R, Dornetshuber-Fleiss R, Nahta R, Castellino RC, Palorini R, Abd Hamid R, Langie SA, Eltom SE, Brooks SA, Ryeom S, Wise SS, Bay SN, Harris SA, Papagerakis S, Romano S, Pavanello S, Eriksson S, Forte S, Casey SC, Luanpitpong S, Lee TJ, Otsuki T, Chen T, Massfelder T, Sanderson T, Guarnieri T, Hultman T, Dormoy V, Odero-Marah V, Sabbisetti V, Maguer-Satta V, Rathmell WK, Engström W, Decker WK, Bisson WH, Rojanasakul Y, Luqmani Y, Chen Z, Hu Z.

Carcinogenesis. 2015 Jun;36 Suppl 1:S254-96. doi: 10.1093/carcin/bgv039. Review. Erratum in: Carcinogenesis. 2016 Mar;37(3):344.


Functionally Distinct Subsets of Lineage-Biased Multipotent Progenitors Control Blood Production in Normal and Regenerative Conditions.

Pietras EM, Reynaud D, Kang YA, Carlin D, Calero-Nieto FJ, Leavitt AD, Stuart JM, Göttgens B, Passegué E.

Cell Stem Cell. 2015 Jul 2;17(1):35-46. doi: 10.1016/j.stem.2015.05.003. Epub 2015 Jun 18.


Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.

Cancer Genome Atlas Research Network, Brat DJ, Verhaak RG, Aldape KD, Yung WK, Salama SR, Cooper LA, Rheinbay E, Miller CR, Vitucci M, Morozova O, Robertson AG, Noushmehr H, Laird PW, Cherniack AD, Akbani R, Huse JT, Ciriello G, Poisson LM, Barnholtz-Sloan JS, Berger MS, Brennan C, Colen RR, Colman H, Flanders AE, Giannini C, Grifford M, Iavarone A, Jain R, Joseph I, Kim J, Kasaian K, Mikkelsen T, Murray BA, O'Neill BP, Pachter L, Parsons DW, Sougnez C, Sulman EP, Vandenberg SR, Van Meir EG, von Deimling A, Zhang H, Crain D, Lau K, Mallery D, Morris S, Paulauskis J, Penny R, Shelton T, Sherman M, Yena P, Black A, Bowen J, Dicostanzo K, Gastier-Foster J, Leraas KM, Lichtenberg TM, Pierson CR, Ramirez NC, Taylor C, Weaver S, Wise L, Zmuda E, Davidsen T, Demchok JA, Eley G, Ferguson ML, Hutter CM, Mills Shaw KR, Ozenberger BA, Sheth M, Sofia HJ, Tarnuzzer R, Wang Z, Yang L, Zenklusen JC, Ayala B, Baboud J, Chudamani S, Jensen MA, Liu J, Pihl T, Raman R, Wan Y, Wu Y, Ally A, Auman JT, Balasundaram M, Balu S, Baylin SB, Beroukhim R, Bootwalla MS, Bowlby R, Bristow CA, Brooks D, Butterfield Y, Carlsen R, Carter S, Chin L, Chu A, Chuah E, Cibulskis K, Clarke A, Coetzee SG, Dhalla N, Fennell T, Fisher S, Gabriel S, Getz G, Gibbs R, Guin R, Hadjipanayis A, Hayes DN, Hinoue T, Hoadley K, Holt RA, Hoyle AP, Jefferys SR, Jones S, Jones CD, Kucherlapati R, Lai PH, Lander E, Lee S, Lichtenstein L, Ma Y, Maglinte DT, Mahadeshwar HS, Marra MA, Mayo M, Meng S, Meyerson ML, Mieczkowski PA, Moore RA, Mose LE, Mungall AJ, Pantazi A, Parfenov M, Park PJ, Parker JS, Perou CM, Protopopov A, Ren X, Roach J, Sabedot TS, Schein J, Schumacher SE, Seidman JG, Seth S, Shen H, Simons JV, Sipahimalani P, Soloway MG, Song X, Sun H, Tabak B, Tam A, Tan D, Tang J, Thiessen N, Triche T Jr, Van Den Berg DJ, Veluvolu U, Waring S, Weisenberger DJ, Wilkerson MD, Wong T, Wu J, Xi L, Xu AW, Yang L, Zack TI, Zhang J, Aksoy BA, Arachchi H, Benz C, Bernard B, Carlin D, Cho J, DiCara D, Frazer S, Fuller GN, Gao J, Gehlenborg N, Haussler D, Heiman DI, Iype L, Jacobsen A, Ju Z, Katzman S, Kim H, Knijnenburg T, Kreisberg RB, Lawrence MS, Lee W, Leinonen K, Lin P, Ling S, Liu W, Liu Y, Liu Y, Lu Y, Mills G, Ng S, Noble MS, Paull E, Rao A, Reynolds S, Saksena G, Sanborn Z, Sander C, Schultz N, Senbabaoglu Y, Shen R, Shmulevich I, Sinha R, Stuart J, Sumer SO, Sun Y, Tasman N, Taylor BS, Voet D, Weinhold N, Weinstein JN, Yang D, Yoshihara K, Zheng S, Zhang W, Zou L, Abel T, Sadeghi S, Cohen ML, Eschbacher J, Hattab EM, Raghunathan A, Schniederjan MJ, Aziz D, Barnett G, Barrett W, Bigner DD, Boice L, Brewer C, Calatozzolo C, Campos B, Carlotti CG Jr, Chan TA, Cuppini L, Curley E, Cuzzubbo S, Devine K, DiMeco F, Duell R, Elder JB, Fehrenbach A, Finocchiaro G, Friedman W, Fulop J, Gardner J, Hermes B, Herold-Mende C, Jungk C, Kendler A, Lehman NL, Lipp E, Liu O, Mandt R, McGraw M, Mclendon R, McPherson C, Neder L, Nguyen P, Noss A, Nunziata R, Ostrom QT, Palmer C, Perin A, Pollo B, Potapov A, Potapova O, Rathmell WK, Rotin D, Scarpace L, Schilero C, Senecal K, Shimmel K, Shurkhay V, Sifri S, Singh R, Sloan AE, Smolenski K, Staugaitis SM, Steele R, Thorne L, Tirapelli DP, Unterberg A, Vallurupalli M, Wang Y, Warnick R, Williams F, Wolinsky Y, Bell S, Rosenberg M, Stewart C, Huang F, Grimsby JL, Radenbaugh AJ, Zhang J.

N Engl J Med. 2015 Jun 25;372(26):2481-98. doi: 10.1056/NEJMoa1402121. Epub 2015 Jun 10.


Polycyclic aromatic hydrocarbons: from metabolism to lung cancer.

Moorthy B, Chu C, Carlin DJ.

Toxicol Sci. 2015 May;145(1):5-15. doi: 10.1093/toxsci/kfv040. Review.


Noise level measurement, a new method to evaluate effectiveness of sedation in pediatric dentistry.

Sabouri AS, Firoozabadi F, Carlin D, Creighton P, Raczka M, Joshi P, Heard C.

Acta Anaesthesiol Taiwan. 2014 Dec;52(4):169-75. doi: 10.1016/j.aat.2014.11.003. Epub 2015 Jan 7.


Biocatalytic conversion of ethylene to ethylene oxide using an engineered toluene monooxygenase.

Carlin DA, Bertolani SJ, Siegel JB.

Chem Commun (Camb). 2015 Feb 11;51(12):2283-5. doi: 10.1039/c4cc08802f.


Comparative long-term toxicity of Libby amphibole and amosite asbestos in rats after single or multiple intratracheal exposures.

Cyphert JM, Carlin DJ, Nyska A, Schladweiler MC, Ledbetter AD, Shannahan JH, Kodavanti UP, Gavett SH.

J Toxicol Environ Health A. 2015;78(3):151-65. doi: 10.1080/15287394.2014.947455.


Syntaxin13 expression is regulated by mammalian target of rapamycin (mTOR) in injured neurons to promote axon regeneration.

Cho Y, Di Liberto V, Carlin D, Abe N, Li KH, Burlingame AL, Guan S, Michaelevski I, Cavalli V.

J Biol Chem. 2014 May 30;289(22):15820-32. doi: 10.1074/jbc.M113.536607. Epub 2014 Apr 15.


Nanotoxicology and nanotechnology: new findings from the NIEHS and Superfund Research Program scientific community.

Carlin DJ.

Rev Environ Health. 2014;29(1-2):105-7. doi: 10.1515/reveh-2014-0026.


Combustion By-Products and their Health Effects--combustion engineering and global health in the 21st century: issues and challenges.

Lomnicki S, Gullett B, Stöger T, Kennedy I, Diaz J, Dugas TR, Varner K, Carlin DJ, Dellinger B, Cormier SA.

Int J Toxicol. 2014 Jan-Feb;33(1):3-13. doi: 10.1177/1091581813519686. Epub 2014 Jan 16.


Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE).

Paull EO, Carlin DE, Niepel M, Sorger PK, Haussler D, Stuart JM.

Bioinformatics. 2013 Nov 1;29(21):2757-64. doi: 10.1093/bioinformatics/btt471. Epub 2013 Aug 27.


Preventing deaths and injuries from house fires: an outcome evaluation of a community-based smoke alarm installation programme.

Istre GR, McCoy MA, Moore BJ, Roper C, Stephens-Stidham S, Barnard JJ, Carlin DK, Stowe M, Anderson RJ.

Inj Prev. 2014 Apr;20(2):97-102. doi: 10.1136/injuryprev-2013-040823. Epub 2013 Jul 19.


How long do smoke alarms function? A cross-sectional follow-up survey of a smoke alarm installation programme.

McCoy MA, Roper C, Campa E, Stephens-Stidham S, Carlin DK, Istre GR.

Inj Prev. 2014 Apr;20(2):103-7. doi: 10.1136/injuryprev-2013-040824. Epub 2013 Jul 19.


Teplizumab preserves C-peptide in recent-onset type 1 diabetes: two-year results from the randomized, placebo-controlled Protégé trial.

Hagopian W, Ferry RJ Jr, Sherry N, Carlin D, Bonvini E, Johnson S, Stein KE, Koenig S, Daifotis AG, Herold KC, Ludvigsson J; Protégé Trial Investigators.

Diabetes. 2013 Nov;62(11):3901-8. doi: 10.2337/db13-0236. Epub 2013 Jun 25.

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