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Introducing SPeDE: High-Throughput Dereplication and Accurate Determination of Microbial Diversity from Matrix-Assisted Laser Desorption-Ionization Time of Flight Mass Spectrometry Data.

Dumolin C, Aerts M, Verheyde B, Schellaert S, Vandamme T, Van der Jeugt F, De Canck E, Cnockaert M, Wieme AD, Cleenwerck I, Peiren J, Dawyndt P, Vandamme P, Carlier A.

mSystems. 2019 Sep 10;4(5). pii: e00437-19. doi: 10.1128/mSystems.00437-19.


S100 calcium-binding protein B in older patients with depression treated with electroconvulsive therapy.

Carlier A, Boers K, Veerhuis R, Bouckaert F, Sienaert P, Eikelenboom P, Vandenbulcke M, Stek ML, van Exel E, Dols A, Rhebergen D.

Psychoneuroendocrinology. 2019 Aug 24;110:104414. doi: 10.1016/j.psyneuen.2019.104414. [Epub ahead of print]


Five-year mortality in patients with diabetic foot ulcer during 2009-2010 was lower than expected.

Amadou C, Carlier A, Amouyal C, Bourron O, Aubert C, Couture T, Fourniols E, Ha Van G, Rouanet S, Hartemann A.

Diabetes Metab. 2019 Aug 7. pii: S1262-3636(19)30123-5. doi: 10.1016/j.diabet.2019.04.010. [Epub ahead of print]


Inflammation and remission in older patients with depression treated with electroconvulsive therapy; findings from the MODECT study.

Carlier A, Berkhof JG, Rozing M, Bouckaert F, Sienaert P, Eikelenboom P, Veerhuis R, Vandenbulcke M, Berkhof J, Stek ML, Rhebergen D, Dols A, Exel EV.

J Affect Disord. 2019 Sep 1;256:509-516. doi: 10.1016/j.jad.2019.06.040. Epub 2019 Jul 1.


MorphoNet: an interactive online morphological browser to explore complex multi-scale data.

Leggio B, Laussu J, Carlier A, Godin C, Lemaire P, Faure E.

Nat Commun. 2019 Jun 27;10(1):2812. doi: 10.1038/s41467-019-10668-1.


Serum concentration and vascular expression of adiponectin are differentially associated with the diabetic calcifying peripheral arteriopathy.

Aubert CE, Liabeuf S, Amouyal C, Kemel S, Lajat-Kiss F, Lacorte JM, Halbron M, Carlier A, Salem JE, Funck-Brentano C, Perisic Matic L, Witasp A, Stenvinkel P, Phan F, Massy ZA, Hartemann A, Bourron O.

Diabetol Metab Syndr. 2019 Apr 29;11:32. doi: 10.1186/s13098-019-0429-7. eCollection 2019.


Variability in clinical presentation of diabetes mellitus during anti-PD-1 immunotherapy.

Bastin M, Mosbah H, Carlier A, Boudifa A, Villemain A, Hartemann A, Andreelli F.

Diabetes Metab. 2019 Apr 26. pii: S1262-3636(19)30065-5. doi: 10.1016/j.diabet.2019.04.005. [Epub ahead of print] No abstract available.


Adaptations and evolution of a heritable leaf nodule symbiosis between Dioscorea sansibarensis and Orrella dioscoreae.

De Meyer F, Danneels B, Acar T, Rasolomampianina R, Rajaonah MT, Jeannoda V, Carlier A.

ISME J. 2019 Jul;13(7):1831-1844. doi: 10.1038/s41396-019-0398-8. Epub 2019 Mar 15.


Effect of ultrasound on bone fracture healing: A computational mechanobioregulatory model.

Grivas KN, Vavva MG, Polyzos D, Carlier A, Geris L, Van Oosterwyck H, Fotiadis DI.

J Acoust Soc Am. 2019 Feb;145(2):1048. doi: 10.1121/1.5089221.


An interdisciplinary study around the reliquary of the late cardinal Jacques de Vitry.

Decorte R, Polet C, Boudin M, Tilquin F, Matroule JY, Dieu M, Charles C, Carlier A, Lebecque F, Deparis O.

PLoS One. 2019 Feb 22;14(2):e0201424. doi: 10.1371/journal.pone.0201424. eCollection 2019.


Synthesis and Biological Evaluation of the Novel Growth Inhibitor Streptol Glucoside, Isolated from an Obligate Plant Symbiont.

Hsiao CC, Sieber S, Georgiou A, Bailly A, Emmanouilidou D, Carlier A, Eberl L, Gademann K.

Chemistry. 2019 Feb 1;25(7):1722-1726. doi: 10.1002/chem.201805693. Epub 2019 Jan 9.


Orthodontic - Surgical management in a Class II case with idiopathic root resorption.

Carlier A, Van de Casteele E, Van Erum R, Nadjmi N.

J Stomatol Oral Maxillofac Surg. 2019 Jun;120(3):263-266. doi: 10.1016/j.jormas.2018.11.005. Epub 2018 Nov 16.


The dark side of soft tissues: Unexpected inorganic carbonate in the invasive slipper limpet Crepidula fornicata and its implications for stable isotope interpretations.

Androuin T, Dubois SF, Decottignies P, Pelleter E, Carlier A.

Rapid Commun Mass Spectrom. 2019 Jan 15;33(1):107-115. doi: 10.1002/rcm.8322.


Patterns of Nucleotide Deletion and Insertion Inferred from Bacterial Pseudogenes.

Danneels B, Pinto-Carbó M, Carlier A.

Genome Biol Evol. 2018 Jul 1;10(7):1792-1802. doi: 10.1093/gbe/evy140.


Effect of ultrasound on bone fracture healing: A computational bioregulatory model.

Vavva MG, Grivas KN, Carlier A, Polyzos D, Geris L, Van Oosterwyck H, Fotiadis DI.

Comput Biol Med. 2018 Sep 1;100:74-85. doi: 10.1016/j.compbiomed.2018.06.024. Epub 2018 Jun 25.


The course of apathy in late-life depression treated with electroconvulsive therapy; a prospective cohort study.

Carlier A, van Exel E, Dols A, Bouckaert F, Sienaert P, Ten Kate M, Wattjes MP, Vandenbulcke M, Stek ML, Rhebergen D.

Int J Geriatr Psychiatry. 2018 May 30. doi: 10.1002/gps.4917. [Epub ahead of print]


Abditibacterium utsteinense sp. nov., the first cultivated member of candidate phylum FBP, isolated from ice-free Antarctic soil samples.

Tahon G, Tytgat B, Lebbe L, Carlier A, Willems A.

Syst Appl Microbiol. 2018 Jul;41(4):279-290. doi: 10.1016/j.syapm.2018.01.009. Epub 2018 Feb 7.


Shaping Cell Fate: Influence of Topographical Substratum Properties on Embryonic Stem Cells.

Kumari S, Vermeulen S, van der Veer B, Carlier A, de Boer J, Subramanyam D.

Tissue Eng Part B Rev. 2018 Aug;24(4):255-266. doi: 10.1089/ten.TEB.2017.0468. Epub 2018 Mar 27. Review.


Leaf nodule symbiosis: function and transmission of obligate bacterial endophytes.

Pinto-Carbó M, Gademann K, Eberl L, Carlier A.

Curr Opin Plant Biol. 2018 Aug;44:23-31. doi: 10.1016/j.pbi.2018.01.001. Epub 2018 Feb 14. Review.


In silico clinical trials for pediatric orphan diseases.

Carlier A, Vasilevich A, Marechal M, de Boer J, Geris L.

Sci Rep. 2018 Feb 6;8(1):2465. doi: 10.1038/s41598-018-20737-y.


Heterologous Expression, Biosynthetic Studies, and Ecological Function of the Selective Gq-Signaling Inhibitor FR900359.

Crüsemann M, Reher R, Schamari I, Brachmann AO, Ohbayashi T, Kuschak M, Malfacini D, Seidinger A, Pinto-Carbó M, Richarz R, Reuter T, Kehraus S, Hallab A, Attwood M, Schiöth HB, Mergaert P, Kikuchi Y, Schäberle TF, Kostenis E, Wenzel D, Müller CE, Piel J, Carlier A, Eberl L, König GM.

Angew Chem Int Ed Engl. 2018 Jan 15;57(3):836-840. doi: 10.1002/anie.201707996. Epub 2017 Dec 20.


cBiT: A transcriptomics database for innovative biomaterial engineering.

Hebels DGAJ, Carlier A, Coonen MLJ, Theunissen DH, de Boer J.

Biomaterials. 2017 Dec;149:88-97. doi: 10.1016/j.biomaterials.2017.10.008. Epub 2017 Oct 3.


Lipid environment induces ER stress, TXNIP expression and inflammation in immune cells of individuals with type 2 diabetes.

Szpigel A, Hainault I, Carlier A, Venteclef N, Batto AF, Hajduch E, Bernard C, Ktorza A, Gautier JF, Ferré P, Bourron O, Foufelle F.

Diabetologia. 2018 Feb;61(2):399-412. doi: 10.1007/s00125-017-4462-5. Epub 2017 Oct 7.


Comparative Genomics of Burkholderia singularis sp. nov., a Low G+C Content, Free-Living Bacterium That Defies Taxonomic Dissection of the Genus Burkholderia.

Vandamme P, Peeters C, De Smet B, Price EP, Sarovich DS, Henry DA, Hird TJ, Zlosnik JEA, Mayo M, Warner J, Baker A, Currie BJ, Carlier A.

Front Microbiol. 2017 Sep 6;8:1679. doi: 10.3389/fmicb.2017.01679. eCollection 2017.


The Essential Genome of Burkholderia cenocepacia H111.

Higgins S, Sanchez-Contreras M, Gualdi S, Pinto-Carbó M, Carlier A, Eberl L.

J Bacteriol. 2017 Oct 17;199(22). pii: e00260-17. doi: 10.1128/JB.00260-17. Print 2017 Nov 15.


Erratum: Capturing the wide variety of impaired fracture healing phenotypes in Neurofibromatosis Type 1 with eight key factors: a computational study.

Carlier A, Brems H, Ashbourn JMA, Nica I, Legius E, Geris L.

Sci Rep. 2017 Jun 30;7:46384. doi: 10.1038/srep46384.


How Not To Drown in Data: A Guide for Biomaterial Engineers.

Vasilevich AS, Carlier A, de Boer J, Singh S.

Trends Biotechnol. 2017 Aug;35(8):743-755. doi: 10.1016/j.tibtech.2017.05.007. Epub 2017 Jul 7. Review.


Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics.

Rovetto F, Carlier A, Van den Abeele AM, Illeghems K, Van Nieuwerburgh F, Cocolin L, Houf K.

PLoS One. 2017 Jul 3;12(7):e0180493. doi: 10.1371/journal.pone.0180493. eCollection 2017.


Comparative genomics of Burkholderia multivorans, a ubiquitous pathogen with a highly conserved genomic structure.

Peeters C, Cooper VS, Hatcher PJ, Verheyde B, Carlier A, Vandamme P.

PLoS One. 2017 Apr 21;12(4):e0176191. doi: 10.1371/journal.pone.0176191. eCollection 2017.


Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis.

Carlier A, Cnockaert M, Fehr L, Vandamme P, Eberl L.

Syst Appl Microbiol. 2017 Jan;40(1):11-21. doi: 10.1016/j.syapm.2016.10.002. Epub 2016 Nov 24.


Interfascial Spread of Injectate After Adductor Canal Injection in Fresh Human Cadavers.

Goffin P, Lecoq JP, Ninane V, Brichant JF, Sala-Blanch X, Gautier PE, Bonnet P, Carlier A, Hadzic A.

Anesth Analg. 2016 Aug;123(2):501-3. doi: 10.1213/ANE.0000000000001441.


Harnessing Topographical Cues for Tissue Engineering.

Carlier A, Alsberg E.

Tissue Eng Part A. 2016 Aug;22(15-16):995-6. doi: 10.1089/ten.TEA.2016.0188. Epub 2016 Aug 1. No abstract available.


Computational model-informed design and bioprinting of cell-patterned constructs for bone tissue engineering.

Carlier A, Skvortsov GA, Hafezi F, Ferraris E, Patterson J, Koç B, Van Oosterwyck H.

Biofabrication. 2016 May 17;8(2):025009. doi: 10.1088/1758-5090/8/2/025009.


Evidence of horizontal gene transfer between obligate leaf nodule symbionts.

Pinto-Carbó M, Sieber S, Dessein S, Wicker T, Verstraete B, Gademann K, Eberl L, Carlier A.

ISME J. 2016 Sep;10(9):2092-105. doi: 10.1038/ismej.2016.27. Epub 2016 Mar 15.


Capturing the wide variety of impaired fracture healing phenotypes in Neurofibromatosis Type 1 with eight key factors: a computational study.

Carlier A, Brems H, Ashbourn JM, Nica I, Legius E, Geris L.

Sci Rep. 2016 Jan 29;7:20010. doi: 10.1038/srep20010. Erratum in: Sci Rep. 2017 Jun 30;7:46384.


A mechano-regulatory model for bone healing predictions under the influence of ultrasound.

Vavva MG, Grivas KN, Carlier A, Polyzos D, Geris L, Van Oosterwyck H, Fotiadis DI.

Conf Proc IEEE Eng Med Biol Soc. 2015 Aug;2015:921-4. doi: 10.1109/EMBC.2015.7318513.


Computational modeling of bone fracture non-unions: four clinically relevant case studies.

Carlier A, Lammens J, Van Oosterwyck H, Geris L.

In Silico Cell Tissue Sci. 2015 Dec 18;2:1. eCollection 2015. Review.


The genome analysis of Candidatus Burkholderia crenata reveals that secondary metabolism may be a key function of the Ardisia crenata leaf nodule symbiosis.

Carlier A, Fehr L, Pinto-Carbó M, Schäberle T, Reher R, Dessein S, König G, Eberl L.

Environ Microbiol. 2016 Sep;18(8):2507-22. doi: 10.1111/1462-2920.13184. Epub 2016 Jan 21.


The role of siderophores in metal homeostasis of members of the genus Burkholderia.

Mathew A, Jenul C, Carlier AL, Eberl L.

Environ Microbiol Rep. 2016 Feb;8(1):103-9. doi: 10.1111/1758-2229.12357. Epub 2016 Jan 22.


[Obesity, bariatric surgery and fertility].

Bretault M, Carlier A, Barsamian C, Carette C, Lévy R, Bouillot JL, Czernichow S.

Rev Med Interne. 2016 Jan;37(1):1-4. doi: 10.1016/j.revmed.2015.07.015. Epub 2015 Sep 26. French. No abstract available.


Isolation and Total Synthesis of Kirkamide, an Aminocyclitol from an Obligate Leaf Nodule Symbiont.

Sieber S, Carlier A, Neuburger M, Grabenweger G, Eberl L, Gademann K.

Angew Chem Int Ed Engl. 2015 Jun 26;54(27):7968-70. doi: 10.1002/anie.201502696. Epub 2015 Jun 1.


Molecular mechanisms underlying the close association between soil Burkholderia and fungi.

Stopnisek N, Zühlke D, Carlier A, Barberán A, Fierer N, Becher D, Riedel K, Eberl L, Weisskopf L.

ISME J. 2016 Jan;10(1):253-64. doi: 10.1038/ismej.2015.73. Epub 2015 May 19.


Bringing computational models of bone regeneration to the clinic.

Carlier A, Geris L, Lammens J, Van Oosterwyck H.

Wiley Interdiscip Rev Syst Biol Med. 2015 Jul-Aug;7(4):183-94. doi: 10.1002/wsbm.1299. Epub 2015 Apr 21. Review.


Targeting sphingolipid metabolism in the treatment of obesity/type 2 diabetes.

Bellini L, Campana M, Mahfouz R, Carlier A, Véret J, Magnan C, Hajduch E, Le Stunff H.

Expert Opin Ther Targets. 2015;19(8):1037-50. doi: 10.1517/14728222.2015.1028359. Epub 2015 Mar 26. Review.


Oxygen as a critical determinant of bone fracture healing-a multiscale model.

Carlier A, Geris L, van Gastel N, Carmeliet G, Van Oosterwyck H.

J Theor Biol. 2015 Jan 21;365:247-64. doi: 10.1016/j.jtbi.2014.10.012. Epub 2014 Oct 24. Erratum in: J Theor Biol. 2016 Mar 7;392:124.


Size does matter: an integrative in vivo-in silico approach for the treatment of critical size bone defects.

Carlier A, van Gastel N, Geris L, Carmeliet G, Van Oosterwyck H.

PLoS Comput Biol. 2014 Nov 6;10(11):e1003888. doi: 10.1371/journal.pcbi.1003888. eCollection 2014 Nov.


A role for peroxisome proliferator-activated receptor gamma in resveratrol-induced colon cancer cell apoptosis.

Aires V, Brassart B, Carlier A, Scagliarini A, Mandard S, Limagne E, Solary E, Martiny L, Tarpin M, Delmas D.

Mol Nutr Food Res. 2014 Sep;58(9):1785-94. doi: 10.1002/mnfr.201300962. Epub 2014 Jun 30.


Genome Sequence of Burkholderia cenocepacia H111, a Cystic Fibrosis Airway Isolate.

Carlier A, Agnoli K, Pessi G, Suppiger A, Jenul C, Schmid N, Tümmler B, Pinto-Carbo M, Eberl L.

Genome Announc. 2014 Apr 10;2(2). pii: e00298-14. doi: 10.1128/genomeA.00298-14.


A novel siderophore-independent strategy of iron uptake in the genus Burkholderia.

Mathew A, Eberl L, Carlier AL.

Mol Microbiol. 2014 Feb;91(4):805-20. doi: 10.1111/mmi.12499. Epub 2014 Jan 13.


The third replicon of members of the Burkholderia cepacia Complex, plasmid pC3, plays a role in stress tolerance.

Agnoli K, Frauenknecht C, Freitag R, Schwager S, Jenul C, Vergunst A, Carlier A, Eberl L.

Appl Environ Microbiol. 2014 Feb;80(4):1340-8. doi: 10.1128/AEM.03330-13. Epub 2013 Dec 13.

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