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Items: 37

1.

MeCP2-E1 isoform is a dynamically expressed, weakly DNA-bound protein with different protein and DNA interactions compared to MeCP2-E2.

Martínez de Paz A, Khajavi L, Martin H, Claveria-Gimeno R, Tom Dieck S, Cheema MS, Sanchez-Mut JV, Moksa MM, Carles A, Brodie NI, Sheikh TI, Freeman ME, Petrotchenko EV, Borchers CH, Schuman EM, Zytnicki M, Velazquez-Campoy A, Abian O, Hirst M, Esteller M, Vincent JB, Malnou CE, Ausió J.

Epigenetics Chromatin. 2019 Oct 10;12(1):63. doi: 10.1186/s13072-019-0298-1.

2.

Clonal Analysis of Mouse Mammary Luminal Epithelial Cell Transplants.

Nguyen LV, Makarem M, Kannan N, Carles A, Balani S, Moksa M, Hirst M, Eaves CJ.

Stem Cells Dev. 2019 Mar 1;28(5):353-355. doi: 10.1089/scd.2018.0158. Epub 2019 Jan 31. No abstract available.

3.

Epigenetic Restoration of Fetal-like IGF1 Signaling Inhibits Leukemia Stem Cell Activity.

Giambra V, Gusscott S, Gracias D, Song R, Lam SH, Panelli P, Tyshchenko K, Jenkins CE, Hoofd C, Lorzadeh A, Carles A, Hirst M, Eaves CJ, Weng AP.

Cell Stem Cell. 2018 Nov 1;23(5):714-726.e7. doi: 10.1016/j.stem.2018.08.018. Epub 2018 Sep 27.

4.

Fate mapping of human glioblastoma reveals an invariant stem cell hierarchy.

Lan X, Jörg DJ, Cavalli FMG, Richards LM, Nguyen LV, Vanner RJ, Guilhamon P, Lee L, Kushida MM, Pellacani D, Park NI, Coutinho FJ, Whetstone H, Selvadurai HJ, Che C, Luu B, Carles A, Moksa M, Rastegar N, Head R, Dolma S, Prinos P, Cusimano MD, Das S, Bernstein M, Arrowsmith CH, Mungall AJ, Moore RA, Ma Y, Gallo M, Lupien M, Pugh TJ, Taylor MD, Hirst M, Eaves CJ, Simons BD, Dirks PB.

Nature. 2017 Sep 14;549(7671):227-232. doi: 10.1038/nature23666. Epub 2017 Aug 30.

5.

Characterization of the human thyroid epigenome.

Siu C, Wiseman S, Gakkhar S, Heravi-Moussavi A, Bilenky M, Carles A, Sierocinski T, Tam A, Zhao E, Kasaian K, Moore RA, Mungall AJ, Walker B, Thomson T, Marra MA, Hirst M, Jones SJM.

J Endocrinol. 2017 Nov;235(2):153-165. doi: 10.1530/JOE-17-0145. Epub 2017 Aug 14.

PMID:
28808080
6.

Whole-genome analysis reveals unexpected dynamics of mutant subclone development in a patient with JAK2-V617F-positive chronic myeloid leukemia.

Sloma I, Mitjavila-Garcia MT, Feraud O, Griscelli F, Oudrhiri N, El Marsafy S, Gobbo E, Divers D, Proust A, Smadja DM, Desterke C, Carles A, Ma Y, Hirst M, Marra MA, Eaves CJ, Bennaceur-Griscelli A, Turhan AG.

Exp Hematol. 2017 Sep;53:48-58. doi: 10.1016/j.exphem.2017.05.007. Epub 2017 Jun 8.

PMID:
28602946
7.

Nucleosome Density ChIP-Seq Identifies Distinct Chromatin Modification Signatures Associated with MNase Accessibility.

Lorzadeh A, Bilenky M, Hammond C, Knapp DJHF, Li L, Miller PH, Carles A, Heravi-Moussavi A, Gakkhar S, Moksa M, Eaves CJ, Hirst M.

Cell Rep. 2016 Nov 15;17(8):2112-2124. doi: 10.1016/j.celrep.2016.10.055.

8.

Analysis of Normal Human Mammary Epigenomes Reveals Cell-Specific Active Enhancer States and Associated Transcription Factor Networks.

Pellacani D, Bilenky M, Kannan N, Heravi-Moussavi A, Knapp DJHF, Gakkhar S, Moksa M, Carles A, Moore R, Mungall AJ, Marra MA, Jones SJM, Aparicio S, Hirst M, Eaves CJ.

Cell Rep. 2016 Nov 15;17(8):2060-2074. doi: 10.1016/j.celrep.2016.10.058.

9.

Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways.

Chun HE, Lim EL, Heravi-Moussavi A, Saberi S, Mungall KL, Bilenky M, Carles A, Tse K, Shlafman I, Zhu K, Qian JQ, Palmquist DL, He A, Long W, Goya R, Ng M, LeBlanc VG, Pleasance E, Thiessen N, Wong T, Chuah E, Zhao YJ, Schein JE, Gerhard DS, Taylor MD, Mungall AJ, Moore RA, Ma Y, Jones SJM, Perlman EJ, Hirst M, Marra MA.

Cancer Cell. 2016 Mar 14;29(3):394-406. doi: 10.1016/j.ccell.2016.02.009.

10.

Barcoding reveals complex clonal dynamics of de novo transformed human mammary cells.

Nguyen LV, Pellacani D, Lefort S, Kannan N, Osako T, Makarem M, Cox CL, Kennedy W, Beer P, Carles A, Moksa M, Bilenky M, Balani S, Babovic S, Sun I, Rosin M, Aparicio S, Hirst M, Eaves CJ.

Nature. 2015 Dec 10;528(7581):267-71. doi: 10.1038/nature15742. Epub 2015 Dec 2.

PMID:
26633636
11.

Integrative analysis of 111 reference human epigenomes.

Roadmap Epigenomics Consortium, Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, Sarkar A, Quon G, Sandstrom RS, Eaton ML, Wu YC, Pfenning AR, Wang X, Claussnitzer M, Liu Y, Coarfa C, Harris RA, Shoresh N, Epstein CB, Gjoneska E, Leung D, Xie W, Hawkins RD, Lister R, Hong C, Gascard P, Mungall AJ, Moore R, Chuah E, Tam A, Canfield TK, Hansen RS, Kaul R, Sabo PJ, Bansal MS, Carles A, Dixon JR, Farh KH, Feizi S, Karlic R, Kim AR, Kulkarni A, Li D, Lowdon R, Elliott G, Mercer TR, Neph SJ, Onuchic V, Polak P, Rajagopal N, Ray P, Sallari RC, Siebenthall KT, Sinnott-Armstrong NA, Stevens M, Thurman RE, Wu J, Zhang B, Zhou X, Beaudet AE, Boyer LA, De Jager PL, Farnham PJ, Fisher SJ, Haussler D, Jones SJ, Li W, Marra MA, McManus MT, Sunyaev S, Thomson JA, Tlsty TD, Tsai LH, Wang W, Waterland RA, Zhang MQ, Chadwick LH, Bernstein BE, Costello JF, Ecker JR, Hirst M, Meissner A, Milosavljevic A, Ren B, Stamatoyannopoulos JA, Wang T, Kellis M.

Nature. 2015 Feb 19;518(7539):317-30. doi: 10.1038/nature14248.

12.

Epigenetic and transcriptional determinants of the human breast.

Gascard P, Bilenky M, Sigaroudinia M, Zhao J, Li L, Carles A, Delaney A, Tam A, Kamoh B, Cho S, Griffith M, Chu A, Robertson G, Cheung D, Li I, Heravi-Moussavi A, Moksa M, Mingay M, Hussainkhel A, Davis B, Nagarajan RP, Hong C, Echipare L, O'Geen H, Hangauer MJ, Cheng JB, Neel D, Hu D, McManus MT, Moore R, Mungall A, Ma Y, Plettner P, Ziv E, Wang T, Farnham PJ, Jones SJ, Marra MA, Tlsty TD, Costello JF, Hirst M.

Nat Commun. 2015 Feb 18;6:6351. doi: 10.1038/ncomms7351.

13.

DNA barcoding reveals diverse growth kinetics of human breast tumour subclones in serially passaged xenografts.

Nguyen LV, Cox CL, Eirew P, Knapp DJ, Pellacani D, Kannan N, Carles A, Moksa M, Balani S, Shah S, Hirst M, Aparicio S, Eaves CJ.

Nat Commun. 2014 Dec 23;5:5871. doi: 10.1038/ncomms6871.

14.

HISTONE DEACETYLASE 9 represses seedling traits in Arabidopsis thaliana dry seeds.

van Zanten M, Zöll C, Wang Z, Philipp C, Carles A, Li Y, Kornet NG, Liu Y, Soppe WJ.

Plant J. 2014 Nov;80(3):475-88. doi: 10.1111/tpj.12646. Epub 2014 Sep 30.

15.

Clonal analysis via barcoding reveals diverse growth and differentiation of transplanted mouse and human mammary stem cells.

Nguyen LV, Makarem M, Carles A, Moksa M, Kannan N, Pandoh P, Eirew P, Osako T, Kardel M, Cheung AM, Kennedy W, Tse K, Zeng T, Zhao Y, Humphries RK, Aparicio S, Eaves CJ, Hirst M.

Cell Stem Cell. 2014 Feb 6;14(2):253-63. doi: 10.1016/j.stem.2013.12.011. Epub 2014 Jan 16.

16.

Extension of the TDCR model to compute counting efficiencies for radionuclides with complex decay schemes.

Kossert K, Cassette P, Carles AG, Jörg G, Gostomski CL, Nähle O, Wolf Ch.

Appl Radiat Isot. 2014 May;87:242-8. doi: 10.1016/j.apradiso.2013.11.004. Epub 2013 Nov 13.

PMID:
24296068
17.

Analysis of the clonal growth and differentiation dynamics of primitive barcoded human cord blood cells in NSG mice.

Cheung AM, Nguyen LV, Carles A, Beer P, Miller PH, Knapp DJ, Dhillon K, Hirst M, Eaves CJ.

Blood. 2013 Oct 31;122(18):3129-37. doi: 10.1182/blood-2013-06-508432. Epub 2013 Sep 12.

18.

E-cadherin is required for the proper activation of the Lifr/Gp130 signaling pathway in mouse embryonic stem cells.

del Valle I, Rudloff S, Carles A, Li Y, Liszewska E, Vogt R, Kemler R.

Development. 2013 Apr;140(8):1684-92. doi: 10.1242/dev.088690. Epub 2013 Mar 13.

19.

Arabidopsis paired amphipathic helix proteins SNL1 and SNL2 redundantly regulate primary seed dormancy via abscisic acid-ethylene antagonism mediated by histone deacetylation.

Wang Z, Cao H, Sun Y, Li X, Chen F, Carles A, Li Y, Ding M, Zhang C, Deng X, Soppe WJ, Liu YX.

Plant Cell. 2013 Jan;25(1):149-66. doi: 10.1105/tpc.112.108191. Epub 2013 Jan 31.

20.

Tubulin tyrosine ligase like 12, a TTLL family member with SET- and TTL-like domains and roles in histone and tubulin modifications and mitosis.

Brants J, Semenchenko K, Wasylyk C, Robert A, Carles A, Zambrano A, Pradeau-Aubreton K, Birck C, Schalken JA, Poch O, de Mey J, Wasylyk B.

PLoS One. 2012;7(12):e51258. doi: 10.1371/journal.pone.0051258. Epub 2012 Dec 12.

21.

Control and consequences of chromatin compaction during seed maturation in Arabidopsis thaliana.

van Zanten M, Carles A, Li Y, Soppe WJ.

Plant Signal Behav. 2012 Mar;7(3):338-41. doi: 10.4161/psb.19281. Epub 2012 Mar 1.

22.

Identification of the Arabidopsis REDUCED DORMANCY 2 gene uncovers a role for the polymerase associated factor 1 complex in seed dormancy.

Liu Y, Geyer R, van Zanten M, Carles A, Li Y, Hörold A, van Nocker S, Soppe WJ.

PLoS One. 2011;6(7):e22241. doi: 10.1371/journal.pone.0022241. Epub 2011 Jul 25.

23.

Beta shape-factor function and activity determination of 241Pu.

Kossert K, Nähle OJ, Carles AG.

Appl Radiat Isot. 2011 Sep;69(9):1246-50. doi: 10.1016/j.apradiso.2011.03.046. Epub 2011 Apr 9.

PMID:
21507664
24.

Improved method for the calculation of the counting efficiency of electron-capture nuclides in liquid scintillation samples.

Kossert K, Carles AG.

Appl Radiat Isot. 2010 Jul-Aug;68(7-8):1482-8. doi: 10.1016/j.apradiso.2009.11.048. Epub 2009 Dec 1.

PMID:
20022256
26.

A new look towards BAC-based array CGH through a comprehensive comparison with oligo-based array CGH.

Wicker N, Carles A, Mills IG, Wolf M, Veerakumarasivam A, Edgren H, Boileau F, Wasylyk B, Schalken JA, Neal DE, Kallioniemi O, Poch O.

BMC Genomics. 2007 Mar 29;8:84.

27.

Combined electron emission effects on the biologically damaging efficiency of 125I.

Carles AG, Malonda AG.

Int J Radiat Biol. 2006 Mar;82(3):211-20.

PMID:
16638718
28.

Mean values of the LMM Auger transition in a KLM model.

Malonda AG, Carles AG, Garcia G.

Appl Radiat Isot. 2006 Oct-Nov;64(10-11):1485-91. Epub 2006 Mar 29.

PMID:
16574421
29.

Head and neck squamous cell carcinoma transcriptome analysis by comprehensive validated differential display.

Carles A, Millon R, Cromer A, Ganguli G, Lemaire F, Young J, Wasylyk C, Muller D, Schultz I, Rabouel Y, Dembélé D, Zhao C, Marchal P, Ducray C, Bracco L, Abecassis J, Poch O, Wasylyk B.

Oncogene. 2006 Mar 16;25(12):1821-31.

PMID:
16261155
30.

Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis.

Cromer A, Carles A, Millon R, Ganguli G, Chalmel F, Lemaire F, Young J, Dembélé D, Thibault C, Muller D, Poch O, Abecassis J, Wasylyk B.

Oncogene. 2004 Apr 1;23(14):2484-98.

PMID:
14676830
31.

PipeAlign: A new toolkit for protein family analysis.

Plewniak F, Bianchetti L, Brelivet Y, Carles A, Chalmel F, Lecompte O, Mochel T, Moulinier L, Muller A, Muller J, Prigent V, Ripp R, Thierry JC, Thompson JD, Wicker N, Poch O.

Nucleic Acids Res. 2003 Jul 1;31(13):3829-32.

32.

An epidemic of besnoitiosis in goats in Kenya.

Bwangamoi O, Carles AB, Wandera JG.

Vet Rec. 1989 Oct 28;125(18):461. No abstract available.

PMID:
2512714
33.

Arteriosclerosis and related lesions in rabbits.

Ngatia TA, Mugera GM, Njiro SM, Kuria JK, Carles AB.

J Comp Pathol. 1989 Oct;101(3):279-86.

PMID:
2584447
34.

Diffusivity of various inert gases in rat skeletal muscle.

Kawashiro T, Carles AC, Perry SF, Piiper J.

Pflugers Arch. 1975 Sep 9;359(3):219-30.

PMID:
171622
35.

Solubility of various inert gases in rat skeletal muscle.

Carles AC, Kawashiro T, Piiper J.

Pflugers Arch. 1975 Sep 9;359(3):209-18.

PMID:
171621
36.

The incidence of Brucella ovis in some Kenya flocks and its relationship to clinical lesions and semen quality.

Cameron RD, Carles AB, Lauerman LH Jr.

Vet Rec. 1971 Nov 20;89(21):552-7. No abstract available.

PMID:
5168506
37.

Reproductive disorders in sheep.

Carles AB.

Bull Epizoot Dis Afr. 1969 Jun;17(2):245-53. No abstract available.

PMID:
5394168

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