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Items: 39

1.

Signaling Complexity Measured by Shannon Entropy and Its Application in Personalized Medicine.

Conforte AJ, Tuszynski JA, da Silva FAB, Carels N.

Front Genet. 2019 Oct 21;10:930. doi: 10.3389/fgene.2019.00930. eCollection 2019.

2.

In vitro Trypanocidal Activity, Genomic Analysis of Isolates, and in vivo Transcription of Type VI Secretion System of Serratia marcescens Belonging to the Microbiota of Rhodnius prolixus Digestive Tract.

da Mota FF, Castro DP, Vieira CS, Gumiel M, de Albuquerque JP, Carels N, Azambuja P.

Front Microbiol. 2019 Jan 24;9:3205. doi: 10.3389/fmicb.2018.03205. eCollection 2018.

3.

Specific enzyme functionalities of Fusarium oxysporum compared to host plants.

Catharina L, Carels N.

Gene. 2018 Nov 15;676:219-226. doi: 10.1016/j.gene.2018.07.003. Epub 2018 Jul 5.

PMID:
29981422
4.

A Metagenomic Analysis of Bacterial Microbiota in the Digestive Tract of Triatomines.

Carels N, Gumiel M, da Mota FF, de Carvalho Moreira CJ, Azambuja P.

Bioinform Biol Insights. 2017 Sep 27;11:1177932217733422. doi: 10.1177/1177932217733422. eCollection 2017.

5.

A Computational Methodology to Overcome the Challenges Associated With the Search for Specific Enzyme Targets to Develop Drugs Against Leishmania major.

Catharina L, Lima CR, Franca A, Guimarães ACR, Alves-Ferreira M, Tuffery P, Derreumaux P, Carels N.

Bioinform Biol Insights. 2017 Jun 12;11:1177932217712471. doi: 10.1177/1177932217712471. eCollection 2017.

6.

In silico structural characterization of protein targets for drug development against Trypanosoma cruzi.

Lima CR, Carels N, Guimaraes AC, Tufféry P, Derreumaux P.

J Mol Model. 2016 Oct;22(10):244. Epub 2016 Sep 24.

PMID:
27665464
8.

A strategy to identify housekeeping genes suitable for analysis in breast cancer diseases.

Tilli TM, Castro Cda S, Tuszynski JA, Carels N.

BMC Genomics. 2016 Aug 15;17(1):639. doi: 10.1186/s12864-016-2946-1.

9.

Toward precision medicine of breast cancer.

Carels N, Spinassé LB, Tilli TM, Tuszynski JA.

Theor Biol Med Model. 2016 Feb 29;13:7. doi: 10.1186/s12976-016-0035-4. Review.

10.

An Interpretation of the Ancestral Codon from Miller's Amino Acids and Nucleotide Correlations in Modern Coding Sequences.

Carels N, Ponce de Leon M.

Bioinform Biol Insights. 2015 Apr 15;9:37-47. doi: 10.4137/BBI.S24021. eCollection 2015.

11.

Characterization of the microbiota in the guts of Triatoma brasiliensis and Triatoma pseudomaculata infected by Trypanosoma cruzi in natural conditions using culture independent methods.

Gumiel M, da Mota FF, Rizzo Vde S, Sarquis O, de Castro DP, Lima MM, Garcia Ede S, Carels N, Azambuja P.

Parasit Vectors. 2015 Apr 24;8:245. doi: 10.1186/s13071-015-0836-z.

12.

Editorial: Sustainable production of renewable energy from non-food crops.

Laimer M, Maghuly F, Vollmann J, Carels N.

Biotechnol J. 2015 Apr;10(4):503-4. doi: 10.1002/biot.201500100.

PMID:
25847435
13.

A computational strategy to select optimized protein targets for drug development toward the control of cancer diseases.

Carels N, Tilli T, Tuszynski JA.

PLoS One. 2015 Jan 27;10(1):e0115054. doi: 10.1371/journal.pone.0115054. eCollection 2015.

14.

Perennial plants for biofuel production: bridging genomics and field research.

Alves AA, Laviola BG, Formighieri EF, Carels N.

Biotechnol J. 2015 Apr;10(4):505-7. doi: 10.1002/biot.201400201. Epub 2014 Nov 10.

PMID:
25382800
15.

The Purine Bias of Coding Sequences is Determined by Physicochemical Constraints on Proteins.

Ponce de Leon M, de Miranda AB, Alvarez-Valin F, Carels N.

Bioinform Biol Insights. 2014 May 20;8:93-108. doi: 10.4137/BBI.S13161. eCollection 2014.

16.

Metabolic signatures of triatomine vectors of Trypanosoma cruzi unveiled by metabolomics.

Antunes LC, Han J, Pan J, Moreira CJ, Azambuja P, Borchers CH, Carels N.

PLoS One. 2013 Oct 30;8(10):e77283. doi: 10.1371/journal.pone.0077283. eCollection 2013.

17.

A Statistical Method without Training Step for the Classification of Coding Frame in Transcriptome Sequences.

Carels N, Frías D.

Bioinform Biol Insights. 2013;7:35-54. doi: 10.4137/BBI.S10053. Epub 2013 Jan 23.

18.

Cultivation-independent methods reveal differences among bacterial gut microbiota in triatomine vectors of Chagas disease.

da Mota FF, Marinho LP, Moreira CJ, Lima MM, Mello CB, Garcia ES, Carels N, Azambuja P.

PLoS Negl Trop Dis. 2012;6(5):e1631. doi: 10.1371/journal.pntd.0001631. Epub 2012 May 1.

19.

Universal Features for the Classification of Coding and Non-coding DNA Sequences.

Carels N, Vidal R, Frías D.

Bioinform Biol Insights. 2009 Jun 3;3:37-49.

20.

Classifying coding DNA with nucleotide statistics.

Carels N, Frías D.

Bioinform Biol Insights. 2009 Oct 28;3:141-54.

21.

ESTs from Seeds to Assist the Selective Breeding of Jatropha curcas L. for Oil and Active Compounds.

Gomes KA, Almeida TC, Gesteira AS, Lôbo IP, Guimarães AC, de Miranda AB, Van Sluys MA, da Cruz RS, Cascardo JC, Carels N.

Genomics Insights. 2010 Oct 28;3:29-56. doi: 10.4137/GEI.S4340. eCollection 2010.

22.

Single nucleotide polymorphisms from Theobroma cacao expressed sequence tags associated with witches' broom disease in cacao.

Lima LS, Gramacho KP, Carels N, Novais R, Gaiotto FA, Lopes UV, Gesteira AS, Zaidan HA, Cascardo JC, Pires JL, Micheli F.

Genet Mol Res. 2009 Jul 14;8(3):799-808.

23.

The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid.

Formighieri EF, Tiburcio RA, Armas ED, Medrano FJ, Shimo H, Carels N, Góes-Neto A, Cotomacci C, Carazzolle MF, Sardinha-Pinto N, Thomazella DP, Rincones J, Digiampietri L, Carraro DM, Azeredo-Espin AM, Reis SF, Deckmann AC, Gramacho K, Gonçalves MS, Moura Neto JP, Barbosa LV, Meinhardt LW, Cascardo JC, Pereira GA.

Mycol Res. 2008 Oct;112(Pt 10):1136-52. doi: 10.1016/j.mycres.2008.04.014. Epub 2008 May 11.

PMID:
18786820
24.

Comparative analysis of expressed genes from cacao meristems infected by Moniliophthora perniciosa.

Gesteira AS, Micheli F, Carels N, Da Silva AC, Gramacho KP, Schuster I, Macêdo JN, Pereira GA, Cascardo JC.

Ann Bot. 2007 Jul;100(1):129-40. Epub 2007 Jun 8.

25.

The maize gene space is compositionally compartimentalized.

Carels N.

FEBS Lett. 2005 Jul 18;579(18):3867-71.

26.

The pig genome: compositional analysis and identification of the gene-richest regions in chromosomes and nuclei.

Federico C, Saccone S, Andreozzi L, Motta S, Russo V, Carels N, Bernardi G.

Gene. 2004 Dec 22;343(2):245-51.

PMID:
15588579
27.

The mutual information theory for the certification of rice coding sequences.

Carels N, Vidal R, Mansilla R, Frías D.

FEBS Lett. 2004 Jun 18;568(1-3):155-8.

28.

Using analytical ultracentrifugation to study compositional variation in vertebrate genomes.

Clay O, Douady CJ, Carels N, Hughes S, Bucciarelli G, Bernardi G.

Eur Biophys J. 2003 Aug;32(5):418-26. Epub 2003 Apr 9.

PMID:
12684711
29.

Genome properties of the diatom Phaeodactylum tricornutum.

Scala S, Carels N, Falciatore A, Chiusano ML, Bowler C.

Plant Physiol. 2002 Jul;129(3):993-1002.

30.

Compositional mapping of chicken chromosomes and identification of the gene-richest regions.

Andreozzi L, Federico C, Motta S, Saccone S, Sazanova AL, Sazanov AA, Smirnov AF, Galkina SA, Lukina NA, Rodionov AV, Carels N, Bernardi G.

Chromosome Res. 2001;9(7):521-32.

PMID:
11721951
31.

Compositional heterogeneity within and among isochores in mammalian genomes. I. CsCl and sequence analyses.

Clay O, Carels N, Douady C, Macaya G, Bernardi G.

Gene. 2001 Oct 3;276(1-2):15-24.

PMID:
11591467
32.

Translational selection shapes codon usage in the GC-rich genome of Chlamydomonas reinhardtii.

Naya H, Romero H, Carels N, Zavala A, Musto H.

FEBS Lett. 2001 Jul 20;501(2-3):127-30.

33.

Diversity and phylogenetic implications of CsCl profiles from rodent DNAs.

Douady C, Carels N, Clay O, Catzeflis F, Bernardi G.

Mol Phylogenet Evol. 2000 Nov;17(2):219-30.

PMID:
11083936
34.

The compositional organization and the expression of the Arabidopsis genome.

Carels N, Bernardi G.

FEBS Lett. 2000 Apr 28;472(2-3):302-6.

35.

Two classes of genes in plants.

Carels N, Bernardi G.

Genetics. 2000 Apr;154(4):1819-25.

36.

Synonymous and nonsynonymous substitutions in genes from Gramineae: intragenic correlations.

Alvarez-Valin F, Jabbari K, Carels N, Bernardi G.

J Mol Evol. 1999 Sep;49(3):330-42.

PMID:
10473774
37.

Compositional properties of homologous coding sequences from plants

Carels N, Hatey P, Jabbari K, Bernardi G.

J Mol Evol. 1998 Jan;46(1):45-53.

PMID:
9419224
38.

The distribution of genes in the genomes of Gramineae.

Barakat A, Carels N, Bernardi G.

Proc Natl Acad Sci U S A. 1997 Jun 24;94(13):6857-61.

39.

The gene distribution of the maize genome.

Carels N, Barakat A, Bernardi G.

Proc Natl Acad Sci U S A. 1995 Nov 21;92(24):11057-60.

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