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Items: 38

1.

Transcriptomic and genomic structural variation analyses on grape cultivars reveal new insights into the genotype-dependent responses to water stress.

Catacchio CR, Alagna F, Perniola R, Bergamini C, Rotunno S, Calabrese FM, Crupi P, Antonacci D, Ventura M, Cardone MF.

Sci Rep. 2019 Feb 26;9(1):2809. doi: 10.1038/s41598-019-39010-x.

2.

SNP genotyping elucidates the genetic diversity of Magna Graecia grapevine germplasm and its historical origin and dissemination.

De Lorenzis G, Mercati F, Bergamini C, Cardone MF, Lupini A, Mauceri A, Caputo AR, Abbate L, Barbagallo MG, Antonacci D, Sunseri F, Brancadoro L.

BMC Plant Biol. 2019 Jan 6;19(1):7. doi: 10.1186/s12870-018-1576-y.

3.

The molecular characterization by SSRs reveals a new South Italian kinship and the origin of the cultivar Uva di Troia.

Bergamini C, Perniola R, Cardone MF, Gasparro M, Pepe R, Caputo AR, Antonacci D.

Springerplus. 2016 Sep 14;5(1):1562. doi: 10.1186/s40064-016-3228-8. eCollection 2016.

4.

Inter-varietal structural variation in grapevine genomes.

Cardone MF, D'Addabbo P, Alkan C, Bergamini C, Catacchio CR, Anaclerio F, Chiatante G, Marra A, Giannuzzi G, Perniola R, Ventura M, Antonacci D.

Plant J. 2016 Nov;88(4):648-661. doi: 10.1111/tpj.13274. Epub 2016 Sep 16.

5.

Morphological variability in leaves and molecular characterization of novel table grape candidate cultivars (Vitis vinifera L.).

Alba V, Bergamini C, Cardone MF, Gasparro M, Perniola R, Genghi R, Antonacci D.

Mol Biotechnol. 2014 Jun;56(6):557-70. doi: 10.1007/s12033-013-9729-6. Erratum in: Mol Biotechnol. 2014 Sep;56(9):863-4.

PMID:
24415447
6.

Male infertility and copy number variants (CNVs) in the dog: a two-pronged approach using Computer Assisted Sperm Analysis (CASA) and Fluorescent In Situ Hybridization (FISH).

Cassatella D, Martino NA, Valentini L, Guaricci AC, Cardone MF, Pizzi F, Dell'Aquila ME, Ventura M.

BMC Genomics. 2013 Dec 27;14:921. doi: 10.1186/1471-2164-14-921.

7.

Validation assay of p3_VvAGL11 marker in a wide range of genetic background for early selection of stenospermocarpy in Vitis vinifera L.

Bergamini C, Cardone MF, Anaclerio A, Perniola R, Pichierri A, Genghi R, Alba V, Forleo LR, Caputo AR, Montemurro C, Blanco A, Antonacci D.

Mol Biotechnol. 2013 Jul;54(3):1021-30. doi: 10.1007/s12033-013-9654-8.

PMID:
23483354
8.

Sangiovese and its offspring in southern Italy.

Gasparro M, Caputo AR, Bergamini C, Crupi P, Cardone MF, Perniola R, Antonacci D.

Mol Biotechnol. 2013 Jun;54(2):581-9. doi: 10.1007/s12033-012-9600-1.

PMID:
23001829
9.

Evolutionary history of linked D4Z4 and Beta satellite clusters at the FSHD locus (4q35).

Giussani M, Cardone MF, Bodega B, Ginelli E, Meneveri R.

Genomics. 2012 Nov;100(5):289-96. doi: 10.1016/j.ygeno.2012.07.011. Epub 2012 Jul 21.

10.

Evidences for an alternative genealogy of 'Sangiovese'.

Bergamini C, Caputo AR, Gasparro M, Perniola R, Cardone MF, Antonacci D.

Mol Biotechnol. 2013 Mar;53(3):278-88. doi: 10.1007/s12033-012-9524-9.

PMID:
22407722
11.

Copy number variation of individual cattle genomes using next-generation sequencing.

Bickhart DM, Hou Y, Schroeder SG, Alkan C, Cardone MF, Matukumalli LK, Song J, Schnabel RD, Ventura M, Taylor JF, Garcia JF, Van Tassell CP, Sonstegard TS, Eichler EE, Liu GE.

Genome Res. 2012 Apr;22(4):778-90. doi: 10.1101/gr.133967.111. Epub 2012 Feb 2.

12.

Real-time PCR for the detection of precise transgene copy number in durum wheat.

Gadaleta A, Giancaspro A, Cardone MF, Blanco A.

Cell Mol Biol Lett. 2011 Dec;16(4):652-68. doi: 10.2478/s11658-011-0029-5. Epub 2011 Sep 15.

13.

Genomic characteristics of cattle copy number variations.

Hou Y, Liu GE, Bickhart DM, Cardone MF, Wang K, Kim ES, Matukumalli LK, Ventura M, Song J, VanRaden PM, Sonstegard TS, Van Tassell CP.

BMC Genomics. 2011 Feb 23;12:127. doi: 10.1186/1471-2164-12-127.

14.

Initial analysis of copy number variations in cattle selected for resistance or susceptibility to intestinal nematodes.

Liu GE, Brown T, Hebert DA, Cardone MF, Hou Y, Choudhary RK, Shaffer J, Amazu C, Connor EE, Ventura M, Gasbarre LC.

Mamm Genome. 2011 Feb;22(1-2):111-21. doi: 10.1007/s00335-010-9308-0. Epub 2010 Dec 3.

PMID:
21125402
15.

Genome-wide characterization of centromeric satellites from multiple mammalian genomes.

Alkan C, Cardone MF, Catacchio CR, Antonacci F, O'Brien SJ, Ryder OA, Purgato S, Zoli M, Della Valle G, Eichler EE, Ventura M.

Genome Res. 2011 Jan;21(1):137-45. doi: 10.1101/gr.111278.110. Epub 2010 Nov 16.

16.

Analysis of copy number variations among diverse cattle breeds.

Liu GE, Hou Y, Zhu B, Cardone MF, Jiang L, Cellamare A, Mitra A, Alexander LJ, Coutinho LL, Dell'Aquila ME, Gasbarre LC, Lacalandra G, Li RW, Matukumalli LK, Nonneman D, Regitano LC, Smith TP, Song J, Sonstegard TS, Van Tassell CP, Ventura M, Eichler EE, McDaneld TG, Keele JW.

Genome Res. 2010 May;20(5):693-703. doi: 10.1101/gr.105403.110. Epub 2010 Mar 8.

17.

New insights into centromere organization and evolution from the white-cheeked gibbon and marmoset.

Cellamare A, Catacchio CR, Alkan C, Giannuzzi G, Antonacci F, Cardone MF, Della Valle G, Malig M, Rocchi M, Eichler EE, Ventura M.

Mol Biol Evol. 2009 Aug;26(8):1889-900. doi: 10.1093/molbev/msp101. Epub 2009 May 8.

18.

A burst of segmental duplications in the genome of the African great ape ancestor.

Marques-Bonet T, Kidd JM, Ventura M, Graves TA, Cheng Z, Hillier LW, Jiang Z, Baker C, Malfavon-Borja R, Fulton LA, Alkan C, Aksay G, Girirajan S, Siswara P, Chen L, Cardone MF, Navarro A, Mardis ER, Wilson RK, Eichler EE.

Nature. 2009 Feb 12;457(7231):877-81. doi: 10.1038/nature07744.

19.

Evolutionary toggling of the MAPT 17q21.31 inversion region.

Zody MC, Jiang Z, Fung HC, Antonacci F, Hillier LW, Cardone MF, Graves TA, Kidd JM, Cheng Z, Abouelleil A, Chen L, Wallis J, Glasscock J, Wilson RK, Reily AD, Duckworth J, Ventura M, Hardy J, Warren WC, Eichler EE.

Nat Genet. 2008 Sep;40(9):1076-83. doi: 10.1038/ng.193.

20.

A satellite-like sequence, representing a "clone gap" in the human genome, was likely involved in the seeding of a novel centromere in macaque.

Carbone L, D'addabbo P, Cardone MF, Teti MG, Misceo D, Vessere GM, de Jong PJ, Rocchi M.

Chromosoma. 2009 Apr;118(2):269-77. doi: 10.1007/s00412-008-0196-y. Epub 2008 Dec 2.

PMID:
19048265
21.

Primate chromosome evolution: ancestral karyotypes, marker order and neocentromeres.

Stanyon R, Rocchi M, Capozzi O, Roberto R, Misceo D, Ventura M, Cardone MF, Bigoni F, Archidiacono N.

Chromosome Res. 2008;16(1):17-39. doi: 10.1007/s10577-007-1209-z. Review.

PMID:
18293103
22.

Hominoid chromosomal rearrangements on 17q map to complex regions of segmental duplication.

Cardone MF, Jiang Z, D'Addabbo P, Archidiacono N, Rocchi M, Eichler EE, Ventura M.

Genome Biol. 2008;9(2):R28. doi: 10.1186/gb-2008-9-2-r28. Epub 2008 Feb 7.

23.

Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution.

Jiang Z, Tang H, Ventura M, Cardone MF, Marques-Bonet T, She X, Pevzner PA, Eichler EE.

Nat Genet. 2007 Nov;39(11):1361-8. Epub 2007 Oct 7.

PMID:
17922013
24.

Characterization and evolution of the novel gene family FAM90A in primates originated by multiple duplication and rearrangement events.

Bosch N, Cáceres M, Cardone MF, Carreras A, Ballana E, Rocchi M, Armengol L, Estivill X.

Hum Mol Genet. 2007 Nov 1;16(21):2572-82. Epub 2007 Aug 7.

PMID:
17684299
25.

Evolutionary history of chromosome 11 featuring four distinct centromere repositioning events in Catarrhini.

Cardone MF, Lomiento M, Teti MG, Misceo D, Roberto R, Capozzi O, D'Addabbo P, Ventura M, Rocchi M, Archidiacono N.

Genomics. 2007 Jul;90(1):35-43. Epub 2007 May 8.

26.

Evolutionary formation of new centromeres in macaque.

Ventura M, Antonacci F, Cardone MF, Stanyon R, D'Addabbo P, Cellamare A, Sprague LJ, Eichler EE, Archidiacono N, Rocchi M.

Science. 2007 Apr 13;316(5822):243-6.

27.

Evolutionary genomic remodelling of the human 4q subtelomere (4q35.2).

Bodega B, Cardone MF, Müller S, Neusser M, Orzan F, Rossi E, Battaglioli E, Marozzi A, Riva P, Rocchi M, Meneveri R, Ginelli E.

BMC Evol Biol. 2007 Mar 14;7:39.

28.

Independent centromere formation in a capricious, gene-free domain of chromosome 13q21 in Old World monkeys and pigs.

Cardone MF, Alonso A, Pazienza M, Ventura M, Montemurro G, Carbone L, de Jong PJ, Stanyon R, D'Addabbo P, Archidiacono N, She X, Eichler EE, Warburton PE, Rocchi M.

Genome Biol. 2006;7(10):R91. Epub 2006 Oct 13.

29.

The boundary of macaque rDNA is constituted by low-copy sequences conserved during evolution.

Bodega B, Cardone MF, Rocchi M, Meneveri R, Marozzi A, Ginelli E.

Genomics. 2006 Nov;88(5):564-71. Epub 2006 Jun 9.

30.

A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications.

She X, Liu G, Ventura M, Zhao S, Misceo D, Roberto R, Cardone MF, Rocchi M; NISC Comparative Sequencing Program, Green ED, Archidiacano N, Eichler EE.

Genome Res. 2006 May;16(5):576-83. Epub 2006 Apr 10.

31.

Evolutionary history of chromosome 20.

Misceo D, Cardone MF, Carbone L, D'Addabbo P, de Jong PJ, Rocchi M, Archidiacono N.

Mol Biol Evol. 2005 Feb;22(2):360-6. Epub 2004 Oct 20.

PMID:
15496555
32.

Recurrent sites for new centromere seeding.

Ventura M, Weigl S, Carbone L, Cardone MF, Misceo D, Teti M, D'Addabbo P, Wandall A, Björck E, de Jong PJ, She X, Eichler EE, Archidiacono N, Rocchi M.

Genome Res. 2004 Sep;14(9):1696-703.

33.

Localization of beta-defensin genes in non human primates.

Ventura M, Boniotto M, Pazienza M, Palumbo V, Cardone MF, Rocchi M, Tossi A, Amoroso A, Crovella S.

Eur J Histochem. 2004 Apr-Jun;48(2):185-90.

PMID:
15208090
34.

Evolution of beta satellite DNA sequences: evidence for duplication-mediated repeat amplification and spreading.

Cardone MF, Ballarati L, Ventura M, Rocchi M, Marozzi A, Ginelli E, Meneveri R.

Mol Biol Evol. 2004 Sep;21(9):1792-9. Epub 2004 Jun 16.

PMID:
15201396
35.

Refinement of a chimpanzee pericentric inversion breakpoint to a segmental duplication cluster.

Locke DP, Archidiacono N, Misceo D, Cardone MF, Deschamps S, Roe B, Rocchi M, Eichler EE.

Genome Biol. 2003;4(8):R50. Epub 2003 Jul 15.

36.

Analysis of chromosome conservation in Lemur catta studied by chromosome paints and BAC/PAC probes.

Cardone MF, Ventura M, Tempesta S, Rocchi M, Archidiacono N.

Chromosoma. 2002 Dec;111(5):348-56. Epub 2002 Oct 9.

PMID:
12474064
37.

Localization of a new highly repeated DNA sequence of Lemur cafta (Lemuridae, Strepsirhini).

Boniotto M, Ventura M, Cardone MF, Boaretto F, Archidiacono N, Rocchi M, Crovella S.

Genome. 2002 Oct;45(5):973-6.

PMID:
12416631
38.

Characterization of a highly repeated DNA sequence family in five species of the genus Eulemur.

Ventura M, Boniotto M, Cardone MF, Fulizio L, Archidiacono N, Rocchi M, Crovella S.

Gene. 2001 Sep 19;275(2):305-10.

PMID:
11587858

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