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Items: 14

1.

Linked genetic variation and not genome structure causes widespread differential expression associated with chromosomal inversions.

Said I, Byrne A, Serrano V, Cardeno C, Vollmers C, Corbett-Detig R.

Proc Natl Acad Sci U S A. 2018 May 22;115(21):5492-5497. doi: 10.1073/pnas.1721275115. Epub 2018 May 7.

PMID:
29735663
2.

The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae.

Neale DB, McGuire PE, Wheeler NC, Stevens KA, Crepeau MW, Cardeno C, Zimin AV, Puiu D, Pertea GM, Sezen UU, Casola C, Koralewski TE, Paul R, Gonzalez-Ibeas D, Zaman S, Cronn R, Yandell M, Holt C, Langley CH, Yorke JA, Salzberg SL, Wegrzyn JL.

G3 (Bethesda). 2017 Sep 7;7(9):3157-3167. doi: 10.1534/g3.117.300078.

3.

Sequence of the Sugar Pine Megagenome.

Stevens KA, Wegrzyn JL, Zimin A, Puiu D, Crepeau M, Cardeno C, Paul R, Gonzalez-Ibeas D, Koriabine M, Holtz-Morris AE, Martínez-García PJ, Sezen UU, Marçais G, Jermstad K, McGuire PE, Loopstra CA, Davis JM, Eckert A, de Jong P, Yorke JA, Salzberg SL, Neale DB, Langley CH.

Genetics. 2016 Dec;204(4):1613-1626. Epub 2016 Oct 28.

4.

The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of non-structural polyphenols.

Martínez-García PJ, Crepeau MW, Puiu D, Gonzalez-Ibeas D, Whalen J, Stevens KA, Paul R, Butterfield TS, Britton MT, Reagan RL, Chakraborty S, Walawage SL, Vasquez-Gross HA, Cardeno C, Famula RA, Pratt K, Kuruganti S, Aradhya MK, Leslie CA, Dandekar AM, Salzberg SL, Wegrzyn JL, Langley CH, Neale DB.

Plant J. 2016 Sep;87(5):507-32. doi: 10.1111/tpj.13207. Epub 2016 Jul 18.

5.

The Drosophila genome nexus: a population genomic resource of 623 Drosophila melanogaster genomes, including 197 from a single ancestral range population.

Lack JB, Cardeno CM, Crepeau MW, Taylor W, Corbett-Detig RB, Stevens KA, Langley CH, Pool JE.

Genetics. 2015 Apr;199(4):1229-41. doi: 10.1534/genetics.115.174664. Epub 2015 Jan 27.

6.

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies.

Neale DB, Wegrzyn JL, Stevens KA, Zimin AV, Puiu D, Crepeau MW, Cardeno C, Koriabine M, Holtz-Morris AE, Liechty JD, Martínez-García PJ, Vasquez-Gross HA, Lin BY, Zieve JJ, Dougherty WM, Fuentes-Soriano S, Wu LS, Gilbert D, Marçais G, Roberts M, Holt C, Yandell M, Davis JM, Smith KE, Dean JF, Lorenz WW, Whetten RW, Sederoff R, Wheeler N, McGuire PE, Main D, Loopstra CA, Mockaitis K, deJong PJ, Yorke JA, Salzberg SL, Langley CH.

Genome Biol. 2014 Mar 4;15(3):R59. doi: 10.1186/gb-2014-15-3-r59.

7.

Population Genomics of sub-saharan Drosophila melanogaster: African diversity and non-African admixture.

Pool JE, Corbett-Detig RB, Sugino RP, Stevens KA, Cardeno CM, Crepeau MW, Duchen P, Emerson JJ, Saelao P, Begun DJ, Langley CH.

PLoS Genet. 2012;8(12):e1003080. doi: 10.1371/journal.pgen.1003080. Epub 2012 Dec 20.

8.

[Clinical Practice Guide for Early Detection, Diagnosis and Treatment of the Acute Intoxication Phase in Patients with Alcohol Abuse or Dependence: Part II: Evaluation and Management of Patients with Acute Alcohol Intoxication].

de la Espriella Guerrero R, de la Hoz Bradford AM, Zárate AU, Lee PR, Menéndez MC, Rentería AM, Hernández DC, Cardeño C, Barré MC, Kunzel GH, Gómez-Restrepo C.

Rev Colomb Psiquiatr. 2012 Dec;41(4):805-25. doi: 10.1016/S0034-7450(14)60048-2. Epub 2014 May 10. Spanish.

PMID:
26572267
9.

Sequence-based detection and breakpoint assembly of polymorphic inversions.

Corbett-Detig RB, Cardeno C, Langley CH.

Genetics. 2012 Sep;192(1):131-7. doi: 10.1534/genetics.112.141622. Epub 2012 Jun 5.

10.

Genomic variation in natural populations of Drosophila melanogaster.

Langley CH, Stevens K, Cardeno C, Lee YC, Schrider DR, Pool JE, Langley SA, Suarez C, Corbett-Detig RB, Kolaczkowski B, Fang S, Nista PM, Holloway AK, Kern AD, Dewey CN, Song YS, Hahn MW, Begun DJ.

Genetics. 2012 Oct;192(2):533-98. doi: 10.1534/genetics.112.142018. Epub 2012 Jun 5.

11.

Genome-wide analysis of retrogene polymorphisms in Drosophila melanogaster.

Schrider DR, Stevens K, Cardeño CM, Langley CH, Hahn MW.

Genome Res. 2011 Dec;21(12):2087-95. doi: 10.1101/gr.116434.110.

12.

Circumventing heterozygosity: sequencing the amplified genome of a single haploid Drosophila melanogaster embryo.

Langley CH, Crepeau M, Cardeno C, Corbett-Detig R, Stevens K.

Genetics. 2011 Jun;188(2):239-46. doi: 10.1534/genetics.111.127530. Epub 2011 Mar 24.

13.

Putative association of the carboxy-terminal PDZ ligand of neuronal nitric oxide synthase gene (CAPON) with schizophrenia in a Colombian population.

Miranda A, García J, López C, Gordon D, Palacio C, Restrepo G, Ortiz J, Montoya G, Cardeño C, Calle J, López M, Campo O, Bedoya G, Ruiz-Linares A, Ospina-Duque J.

Schizophr Res. 2006 Feb 28;82(2-3):283-5. Epub 2005 Dec 20. No abstract available.

PMID:
16364597
14.

[Validation of the Diagnostic Interview for Genetic Studies (DIGS) in Colombia].

Palacio CA, García J, Arbeláez MP, Sánchez R, Aguirre B, Garcés IC, Montoya GJ, Gómez J, Agudelo A, López CA, Calle JJ, Cardeño CA, Cano JF, López MC, Montoya P, Herrera CP, González N, González A, Bedoya G, Ruiz A, Ospina J.

Biomedica. 2004 Mar;24(1):56-62. Spanish.

PMID:
15239602

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