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Items: 32


Genomic Basis of Convergent Island Phenotypes in Boa Constrictors.

Card DC, Adams RH, Schield DR, Perry BW, Corbin AB, Pasquesi GIM, Row K, Van Kleeck MJ, Daza JM, Booth W, Montgomery CE, Boback SM, Castoe TA.

Genome Biol Evol. 2019 Nov 1;11(11):3123-3143. doi: 10.1093/gbe/evz226.


Multi-species comparisons of snakes identify coordinated signalling networks underlying post-feeding intestinal regeneration.

Perry BW, Andrew AL, Mostafa Kamal AH, Card DC, Schield DR, Pasquesi GIM, Pellegrino MW, Mackessy SP, Chowdhury SM, Secor SM, Castoe TA.

Proc Biol Sci. 2019 Jul 10;286(1906):20190910. doi: 10.1098/rspb.2019.0910. Epub 2019 Jul 10.


Integrating natural history collections and comparative genomics to study the genetic architecture of convergent evolution.

Lamichhaney S, Card DC, Grayson P, Tonini JFR, Bravo GA, Näpflin K, Termignoni-Garcia F, Torres C, Burbrink F, Clarke JA, Sackton TB, Edwards SV.

Philos Trans R Soc Lond B Biol Sci. 2019 Jul 22;374(1777):20180248. doi: 10.1098/rstb.2018.0248. Epub 2019 Jun 3.


The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes.

Schield DR, Card DC, Hales NR, Perry BW, Pasquesi GM, Blackmon H, Adams RH, Corbin AB, Smith CF, Ramesh B, Demuth JP, Betrán E, Tollis M, Meik JM, Mackessy SP, Castoe TA.

Genome Res. 2019 Apr;29(4):590-601. doi: 10.1101/gr.240952.118. Epub 2019 Mar 21.


The transcriptome of the veiled chameleon (Chamaeleo calyptratus): A resource for studying the evolution and development of vertebrates.

Pinto BJ, Card DC, Castoe TA, Diaz RE Jr, Nielsen SV, Trainor PA, Gamble T.

Dev Dyn. 2019 Aug;248(8):702-708. doi: 10.1002/dvdy.20. Epub 2019 Mar 25.


Novel ecological and climatic conditions drive rapid adaptation in invasive Florida Burmese pythons.

Card DC, Perry BW, Adams RH, Schield DR, Young AS, Andrew AL, Jezkova T, Pasquesi GIM, Hales NR, Walsh MR, Rochford MR, Mazzotti FJ, Hart KM, Hunter ME, Castoe TA.

Mol Ecol. 2018 Dec;27(23):4744-4757. doi: 10.1111/mec.14885. Epub 2018 Oct 24.


Molecular Adaptations for Sensing and Securing Prey and Insight into Amniote Genome Diversity from the Garter Snake Genome.

Perry BW, Card DC, McGlothlin JW, Pasquesi GIM, Adams RH, Schield DR, Hales NR, Corbin AB, Demuth JP, Hoffmann FG, Vandewege MW, Schott RK, Bhattacharyya N, Chang BSW, Casewell NR, Whiteley G, Reyes-Velasco J, Mackessy SP, Gamble T, Storey KB, Biggar KK, Passow CN, Kuo CH, McGaugh SE, Bronikowski AM, de Koning APJ, Edwards SV, Pfrender ME, Minx P, Brodie ED 3rd, Brodie ED Jr, Warren WC, Castoe TA.

Genome Biol Evol. 2018 Aug 1;10(8):2110-2129. doi: 10.1093/gbe/evy157.


Squamate reptiles challenge paradigms of genomic repeat element evolution set by birds and mammals.

Pasquesi GIM, Adams RH, Card DC, Schield DR, Corbin AB, Perry BW, Reyes-Velasco J, Ruggiero RP, Vandewege MW, Shortt JA, Castoe TA.

Nat Commun. 2018 Jul 17;9(1):2774. doi: 10.1038/s41467-018-05279-1.


Cryptic genetic diversity, population structure, and gene flow in the Mojave rattlesnake (Crotalus scutulatus).

Schield DR, Adams RH, Card DC, Corbin AB, Jezkova T, Hales NR, Meik JM, Perry BW, Spencer CL, Smith LL, García GC, Bouzid NM, Strickland JL, Parkinson CL, Borja M, Castañeda-Gaytán G, Bryson RW Jr, Flores-Villela OA, Mackessy SP, Castoe TA.

Mol Phylogenet Evol. 2018 Oct;127:669-681. doi: 10.1016/j.ympev.2018.06.013. Epub 2018 Jun 15.


Shifts in Selective Pressures on Snake Phototransduction Genes Associated with Photoreceptor Transmutation and Dim-Light Ancestry.

Schott RK, Van Nynatten A, Card DC, Castoe TA, S W Chang B.

Mol Biol Evol. 2018 Jun 1;35(6):1376-1389. doi: 10.1093/molbev/msy025.


Assessing the Impacts of Positive Selection on Coalescent-Based Species Tree Estimation and Species Delimitation.

Adams RH, Schield DR, Card DC, Castoe TA.

Syst Biol. 2018 Nov 1;67(6):1076-1090. doi: 10.1093/sysbio/syy034.


Plasticity and local adaptation explain lizard cold tolerance.

Card DC, Schield DR, Castoe TA.

Mol Ecol. 2018 May;27(9):2173-2175. doi: 10.1111/mec.14575.


ThetaMater: Bayesian estimation of population size parameter θ from genomic data.

Adams RH, Schield DR, Card DC, Corbin A, Castoe TA.

Bioinformatics. 2018 Mar 15;34(6):1072-1073. doi: 10.1093/bioinformatics/btx733.


The Discovery of XY Sex Chromosomes in a Boa and Python.

Gamble T, Castoe TA, Nielsen SV, Banks JL, Card DC, Schield DR, Schuett GW, Booth W.

Curr Biol. 2017 Jul 24;27(14):2148-2153.e4. doi: 10.1016/j.cub.2017.06.010. Epub 2017 Jul 6.


Contrasting gene expression programs correspond with predator-induced phenotypic plasticity within and across generations in Daphnia.

Hales NR, Schield DR, Andrew AL, Card DC, Walsh MR, Castoe TA.

Mol Ecol. 2017 Oct;26(19):5003-5015. doi: 10.1111/mec.14213. Epub 2017 Jul 10.


Insight into the roles of selection in speciation from genomic patterns of divergence and introgression in secondary contact in venomous rattlesnakes.

Schield DR, Adams RH, Card DC, Perry BW, Pasquesi GM, Jezkova T, Portik DM, Andrew AL, Spencer CL, Sanchez EE, Fujita MK, Mackessy SP, Castoe TA.

Ecol Evol. 2017 Apr 23;7(11):3951-3966. doi: 10.1002/ece3.2996. eCollection 2017 Jun.


Growth and stress response mechanisms underlying post-feeding regenerative organ growth in the Burmese python.

Andrew AL, Perry BW, Card DC, Schield DR, Ruggiero RP, McGaugh SE, Choudhary A, Secor SM, Castoe TA.

BMC Genomics. 2017 May 2;18(1):338. doi: 10.1186/s12864-017-3743-1.


GppFst: genomic posterior predictive simulations of FST and dXY for identifying outlier loci from population genomic data.

Adams RH, Schield DR, Card DC, Blackmon H, Castoe TA.

Bioinformatics. 2017 May 1;33(9):1414-1415. doi: 10.1093/bioinformatics/btw795.


Hormonally Mediated Increases in Sex-Biased Gene Expression Accompany the Breakdown of Between-Sex Genetic Correlations in a Sexually Dimorphic Lizard.

Cox RM, Cox CL, McGlothlin JW, Card DC, Andrew AL, Castoe TA.

Am Nat. 2017 Mar;189(3):315-332. doi: 10.1086/690105. Epub 2017 Jan 25.


Targeted Capture of Complete Coding Regions across Divergent Species.

Schott RK, Panesar B, Card DC, Preston M, Castoe TA, Chang BS.

Genome Biol Evol. 2017 Feb 1;9(2):398-414. doi: 10.1093/gbe/evx005.


Whole Genome Amplification and Reduced-Representation Genome Sequencing of Schistosoma japonicum Miracidia.

Shortt JA, Card DC, Schield DR, Liu Y, Zhong B, Castoe TA, Carlton EJ, Pollock DD.

PLoS Negl Trop Dis. 2017 Jan 20;11(1):e0005292. doi: 10.1371/journal.pntd.0005292. eCollection 2017 Jan.


minotaur: A platform for the analysis and visualization of multivariate results from genome scans with R Shiny.

Verity R, Collins C, Card DC, Schaal SM, Wang L, Lotterhos KE.

Mol Ecol Resour. 2017 Jan;17(1):33-43. doi: 10.1111/1755-0998.12579. Epub 2016 Aug 31.


Genetic surfing, not allopatric divergence, explains spatial sorting of mitochondrial haplotypes in venomous coralsnakes.

Streicher JW, McEntee JP, Drzich LC, Card DC, Schield DR, Smart U, Parkinson CL, Jezkova T, Smith EN, Castoe TA.

Evolution. 2016 Jul;70(7):1435-49. doi: 10.1111/evo.12967. Epub 2016 Jun 17.


Phylogeographic and population genetic analyses reveal multiple species of Boa and independent origins of insular dwarfism.

Card DC, Schield DR, Adams RH, Corbin AB, Perry BW, Andrew AL, Pasquesi GI, Smith EN, Jezkova T, Boback SM, Booth W, Castoe TA.

Mol Phylogenet Evol. 2016 Sep;102:104-16. doi: 10.1016/j.ympev.2016.05.034. Epub 2016 May 27.


Microsatellite landscape evolutionary dynamics across 450 million years of vertebrate genome evolution.

Adams RH, Blackmon H, Reyes-Velasco J, Schield DR, Card DC, Andrew AL, Waynewood N, Castoe TA.

Genome. 2016 May;59(5):295-310. doi: 10.1139/gen-2015-0124. Epub 2016 Mar 1.


Rapid changes in gene expression direct rapid shifts in intestinal form and function in the Burmese python after feeding.

Andrew AL, Card DC, Ruggiero RP, Schield DR, Adams RH, Pollock DD, Secor SM, Castoe TA.

Physiol Genomics. 2015 May;47(5):147-57. doi: 10.1152/physiolgenomics.00131.2014. Epub 2015 Feb 10.


Incipient speciation with biased gene flow between two lineages of the Western Diamondback Rattlesnake (Crotalus atrox).

Schield DR, Card DC, Adams RH, Jezkova T, Reyes-Velasco J, Proctor FN, Spencer CL, Herrmann HW, Mackessy SP, Castoe TA.

Mol Phylogenet Evol. 2015 Feb;83:213-23. doi: 10.1016/j.ympev.2014.12.006. Epub 2014 Dec 19.


Genetic consequences of postglacial range expansion in two codistributed rodents (genus Dipodomys) depend on ecology and genetic locus.

Jezkova T, Riddle BR, Card DC, Schield DR, Eckstut ME, Castoe TA.

Mol Ecol. 2015 Jan;24(1):83-97. doi: 10.1111/mec.13012. Epub 2014 Dec 13.


Expression of venom gene homologs in diverse python tissues suggests a new model for the evolution of snake venom.

Reyes-Velasco J, Card DC, Andrew AL, Shaney KJ, Adams RH, Schield DR, Casewell NR, Mackessy SP, Castoe TA.

Mol Biol Evol. 2015 Jan;32(1):173-83. doi: 10.1093/molbev/msu294. Epub 2014 Oct 21.


Two low coverage bird genomes and a comparison of reference-guided versus de novo genome assemblies.

Card DC, Schield DR, Reyes-Velasco J, Fujita MK, Andrew AL, Oyler-McCance SJ, Fike JA, Tomback DF, Ruggiero RP, Castoe TA.

PLoS One. 2014 Sep 5;9(9):e106649. doi: 10.1371/journal.pone.0106649. eCollection 2014.


Endogenous hepadnaviruses, bornaviruses and circoviruses in snakes.

Gilbert C, Meik JM, Dashevsky D, Card DC, Castoe TA, Schaack S.

Proc Biol Sci. 2014 Sep 22;281(1791):20141122. doi: 10.1098/rspb.2014.1122.


The Burmese python genome reveals the molecular basis for extreme adaptation in snakes.

Castoe TA, de Koning AP, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, Polanco D, Dobry J, Vandewege MW, Li Q, Schott RK, Kapusta A, Minx P, Feschotte C, Uetz P, Ray DA, Hoffmann FG, Bogden R, Smith EN, Chang BS, Vonk FJ, Casewell NR, Henkel CV, Richardson MK, Mackessy SP, Bronikowski AM, Yandell M, Warren WC, Secor SM, Pollock DD.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20645-50. doi: 10.1073/pnas.1314475110. Epub 2013 Dec 2. Erratum in: Proc Natl Acad Sci U S A. 2013 Dec 17;110(51). doi:10.1073/pnas.1324133111. Bronikowsi, Anne M [corrected to Bronikowski, Anne M]. Proc Natl Acad Sci U S A. 2014 Feb 25;111(8):3194.

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