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Items: 39

1.

Draft Genome Sequences of Campylobacter jejuni Strains Isolated from Poultry.

Wagle BR, Marasini D, Upadhyaya I, Shrestha S, Arsi K, Donoghue AM, Carbonero F, Donoghue DJ, Maas K, Upadhyay A.

Microbiol Resour Announc. 2020 Feb 13;9(7). pii: e01272-19. doi: 10.1128/MRA.01272-19.

2.

Gut Microbiota Modulation by Dietary Barley Malt Melanoidins.

Aljahdali N, Gadonna-Widehem P, Anton PM, Carbonero F.

Nutrients. 2020 Jan 17;12(1). pii: E241. doi: 10.3390/nu12010241.

3.

Berry polyphenols metabolism and impact on human gut microbiota and health.

Lavefve L, Howard LR, Carbonero F.

Food Funct. 2020 Jan 29;11(1):45-65. doi: 10.1039/c9fo01634a. Review.

PMID:
31808762
4.

Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints.

Gomez A, Sharma AK, Mallott EK, Petrzelkova KJ, Jost Robinson CA, Yeoman CJ, Carbonero F, Pafco B, Rothman JM, Ulanov A, Vlckova K, Amato KR, Schnorr SL, Dominy NJ, Modry D, Todd A, Torralba M, Nelson KE, Burns MB, Blekhman R, Remis M, Stumpf RM, Wilson BA, Gaskins HR, Garber PA, White BA, Leigh SR.

mSphere. 2019 Jul 31;4(4). pii: e00271-19. doi: 10.1128/mSphere.00271-19.

5.

The Response of Litter-Associated Myxomycetes to Long-Term Nutrient Addition in a Lowland Tropical Forest.

Walker LM, Cedeño-Sanchez M, Carbonero F, Herre EA, Turner BL, Wright SJ, Stephenson SL.

J Eukaryot Microbiol. 2019 Sep;66(5):757-770. doi: 10.1111/jeu.12724. Epub 2019 Mar 24.

PMID:
30793409
6.

Microbial Ecology of Fermented Vegetables and Non-Alcoholic Drinks and Current Knowledge on Their Impact on Human Health.

Lavefve L, Marasini D, Carbonero F.

Adv Food Nutr Res. 2019;87:147-185. doi: 10.1016/bs.afnr.2018.09.001. Epub 2018 Dec 7. Review.

PMID:
30678814
7.

Impact of Grain Sorghum Polyphenols on Microbiota of Normal Weight and Overweight/Obese Subjects during In Vitro Fecal Fermentation.

Ashley D, Marasini D, Brownmiller C, Lee JA, Carbonero F, Lee SO.

Nutrients. 2019 Jan 22;11(2). pii: E217. doi: 10.3390/nu11020217.

8.

Isolated Rearing at Lactation Increases Gut Microbial Diversity and Post-weaning Performance in Pigs.

Tsai T, Sales MA, Kim H, Erf GF, Vo N, Carbonero F, van der Merwe M, Kegley EB, Buddington R, Wang X, Maxwell CV, Zhao J.

Front Microbiol. 2018 Nov 29;9:2889. doi: 10.3389/fmicb.2018.02889. eCollection 2018.

9.

Specific Members of the Gut Microbiota are Reliable Biomarkers of Irradiation Intensity and Lethality in Large Animal Models of Human Health.

Carbonero F, Mayta A, Bolea M, Yu JZ, Lindeblad M, Lyubimov A, Neri F, Szilagyi E, Smith B, Halliday L, Bartholomew A.

Radiat Res. 2019 Jan;191(1):107-121. doi: 10.1667/RR14975.1. Epub 2018 Nov 15.

PMID:
30430918
10.

A comparative analysis of gut microbiota disturbances in the Gottingen minipig and rhesus macaque models of acute radiation syndrome following bioequivalent radiation exposures.

Carbonero F, Mayta-Apaza AC, Yu JZ, Lindeblad M, Lyubimov A, Neri F, Szilagyi E, Bartholomew A.

Radiat Environ Biophys. 2018 Nov;57(4):419-426. doi: 10.1007/s00411-018-0759-0. Epub 2018 Oct 20.

PMID:
30343431
11.

Impact of tart cherries polyphenols on the human gut microbiota and phenolic metabolites in vitro and in vivo.

Mayta-Apaza AC, Pottgen E, De Bodt J, Papp N, Marasini D, Howard L, Abranko L, Van de Wiele T, Lee SO, Carbonero F.

J Nutr Biochem. 2018 Sep;59:160-172. doi: 10.1016/j.jnutbio.2018.04.001. Epub 2018 Apr 7.

PMID:
30055451
12.

Repeated Oral Exposure to N ε-Carboxymethyllysine, a Maillard Reaction Product, Alleviates Gut Microbiota Dysbiosis in Colitic Mice.

ALJahdali N, Gadonna-Widehem P, Delayre-Orthez C, Marier D, Garnier B, Carbonero F, Anton PM.

Dig Dis Sci. 2017 Dec;62(12):3370-3384. doi: 10.1007/s10620-017-4767-8. Epub 2017 Sep 30.

PMID:
28965192
13.

Overview of craft brewing specificities and potentially associated microbiota.

Rodhouse L, Carbonero F.

Crit Rev Food Sci Nutr. 2019;59(3):462-473. doi: 10.1080/10408398.2017.1378616. Epub 2017 Oct 4. Review.

PMID:
28910550
14.

Impact of Maillard reaction products on nutrition and health: Current knowledge and need to understand their fate in the human digestive system.

ALjahdali N, Carbonero F.

Crit Rev Food Sci Nutr. 2019;59(3):474-487. doi: 10.1080/10408398.2017.1378865. Epub 2017 Oct 20. Review.

PMID:
28901784
15.

Human epigenetics and microbiome: the potential for a revolution in both research areas by integrative studies.

Carbonero F.

Future Sci OA. 2017 Jun 9;3(3):FSO207. doi: 10.4155/fsoa-2017-0046. eCollection 2017 Aug. No abstract available.

16.

Assessing impacts of DNA extraction methods on next generation sequencing of water and wastewater samples.

Walden C, Carbonero F, Zhang W.

J Microbiol Methods. 2017 Oct;141:10-16. doi: 10.1016/j.mimet.2017.07.007. Epub 2017 Jul 17.

PMID:
28728909
17.

Temporal dynamics of the gut microbiota in people sharing a confined environment, a 520-day ground-based space simulation, MARS500.

Turroni S, Rampelli S, Biagi E, Consolandi C, Severgnini M, Peano C, Quercia S, Soverini M, Carbonero FG, Bianconi G, Rettberg P, Canganella F, Brigidi P, Candela M.

Microbiome. 2017 Mar 24;5(1):39. doi: 10.1186/s40168-017-0256-8.

18.

Early exposure to agricultural soil accelerates the maturation of the early-life pig gut microbiota.

Vo N, Tsai TC, Maxwell C, Carbonero F.

Anaerobe. 2017 Jun;45:31-39. doi: 10.1016/j.anaerobe.2017.02.022. Epub 2017 Feb 27.

PMID:
28249795
19.

Do biofilm communities respond to the chemical signatures of fracking? A test involving streams in North-central Arkansas.

Johnson WH, Douglas MR, Lewis JA, Stuecker TN, Carbonero FG, Austin BJ, Evans-White MA, Entrekin SA, Douglas ME.

BMC Microbiol. 2017 Feb 3;17(1):29. doi: 10.1186/s12866-017-0926-5.

20.

Linking dietary patterns with gut microbial composition and function.

Sheflin AM, Melby CL, Carbonero F, Weir TL.

Gut Microbes. 2017 Mar 4;8(2):113-129. doi: 10.1080/19490976.2016.1270809. Epub 2016 Dec 14. Review.

21.

Epigenetic mechanisms in microbial members of the human microbiota: current knowledge and perspectives.

Cureau N, AlJahdali N, Vo N, Carbonero F.

Epigenomics. 2016 Sep;8(9):1259-73. doi: 10.2217/epi-2016-0057. Epub 2016 Sep 2. Review.

PMID:
27587189
22.

Gut Microbiome of Coexisting BaAka Pygmies and Bantu Reflects Gradients of Traditional Subsistence Patterns.

Gomez A, Petrzelkova KJ, Burns MB, Yeoman CJ, Amato KR, Vlckova K, Modry D, Todd A, Jost Robinson CA, Remis MJ, Torralba MG, Morton E, Umaña JD, Carbonero F, Gaskins HR, Nelson KE, Wilson BA, Stumpf RM, White BA, Leigh SR, Blekhman R.

Cell Rep. 2016 Mar 8;14(9):2142-2153. doi: 10.1016/j.celrep.2016.02.013. Epub 2016 Feb 25.

23.

Fat, fibre and cancer risk in African Americans and rural Africans.

O'Keefe SJ, Li JV, Lahti L, Ou J, Carbonero F, Mohammed K, Posma JM, Kinross J, Wahl E, Ruder E, Vipperla K, Naidoo V, Mtshali L, Tims S, Puylaert PG, DeLany J, Krasinskas A, Benefiel AC, Kaseb HO, Newton K, Nicholson JK, de Vos WM, Gaskins HR, Zoetendal EG.

Nat Commun. 2015 Apr 28;6:6342. doi: 10.1038/ncomms7342.

24.

Gut microbiome composition and metabolomic profiles of wild western lowland gorillas (Gorilla gorilla gorilla) reflect host ecology.

Gomez A, Petrzelkova K, Yeoman CJ, Vlckova K, Mrázek J, Koppova I, Carbonero F, Ulanov A, Modry D, Todd A, Torralba M, Nelson KE, Gaskins HR, Wilson B, Stumpf RM, White BA, Leigh SR.

Mol Ecol. 2015 May;24(10):2551-65. doi: 10.1111/mec.13181.

PMID:
25846719
25.

Intestinal and systemic inflammatory responses are positively associated with sulfidogenic bacteria abundance in high-fat-fed male C57BL/6J mice.

Shen W, Wolf PG, Carbonero F, Zhong W, Reid T, Gaskins HR, McIntosh MK.

J Nutr. 2014 Aug;144(8):1181-7. doi: 10.3945/jn.114.194332. Epub 2014 Jun 11.

PMID:
24919690
26.

Inflammation and colorectal cancer, when microbiota-host mutualism breaks.

Candela M, Turroni S, Biagi E, Carbonero F, Rampelli S, Fiorentini C, Brigidi P.

World J Gastroenterol. 2014 Jan 28;20(4):908-22. doi: 10.3748/wjg.v20.i4.908. Review.

27.

Metabolic flexibility as a major predictor of spatial distribution in microbial communities.

Carbonero F, Oakley BB, Purdy KJ.

PLoS One. 2014 Jan 21;9(1):e85105. doi: 10.1371/journal.pone.0085105. eCollection 2014.

28.

Hydrogenotrophic microbiota distinguish native Africans from African and European Americans.

Nava GM, Carbonero F, Ou J, Benefiel AC, O'Keefe SJ, Gaskins HR.

Environ Microbiol Rep. 2012 Jun;4(3):307-15. doi: 10.1111/j.1758-2229.2012.00334.x. Epub 2012 Mar 12.

29.

Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans.

Ou J, Carbonero F, Zoetendal EG, DeLany JP, Wang M, Newton K, Gaskins HR, O'Keefe SJ.

Am J Clin Nutr. 2013 Jul;98(1):111-20. doi: 10.3945/ajcn.112.056689. Epub 2013 May 29.

30.

Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes.

Amato KR, Yeoman CJ, Kent A, Righini N, Carbonero F, Estrada A, Gaskins HR, Stumpf RM, Yildirim S, Torralba M, Gillis M, Wilson BA, Nelson KE, White BA, Leigh SR.

ISME J. 2013 Jul;7(7):1344-53. doi: 10.1038/ismej.2013.16. Epub 2013 Mar 14.

31.

Microbial pathways in colonic sulfur metabolism and links with health and disease.

Carbonero F, Benefiel AC, Alizadeh-Ghamsari AH, Gaskins HR.

Front Physiol. 2012 Nov 28;3:448. doi: 10.3389/fphys.2012.00448. eCollection 2012.

32.

Contributions of the microbial hydrogen economy to colonic homeostasis.

Carbonero F, Benefiel AC, Gaskins HR.

Nat Rev Gastroenterol Hepatol. 2012 Sep;9(9):504-18. doi: 10.1038/nrgastro.2012.85. Epub 2012 May 15. Review.

PMID:
22585131
33.

Genotypic distribution of a specialist model microorganism, Methanosaeta, along an estuarine gradient: does metabolic restriction limit niche differentiation potential?

Carbonero F, Oakley BB, Hawkins RJ, Purdy KJ.

Microb Ecol. 2012 May;63(4):856-64. doi: 10.1007/s00248-011-9993-6. Epub 2011 Dec 20.

PMID:
22183047
34.

Contrasting patterns of niche partitioning between two anaerobic terminal oxidizers of organic matter.

Oakley BB, Carbonero F, Dowd SE, Hawkins RJ, Purdy KJ.

ISME J. 2012 May;6(5):905-14. doi: 10.1038/ismej.2011.165. Epub 2011 Nov 24.

35.

On the relationship between sialomucin and sulfomucin expression and hydrogenotrophic microbes in the human colonic mucosa.

Croix JA, Carbonero F, Nava GM, Russell M, Greenberg E, Gaskins HR.

PLoS One. 2011;6(9):e24447. doi: 10.1371/journal.pone.0024447. Epub 2011 Sep 9.

36.

Microbial DNA extraction from intestinal biopsies is improved by avoiding mechanical cell disruption.

Carbonero F, Nava GM, Benefiel AC, Greenberg E, Gaskins HR.

J Microbiol Methods. 2011 Oct;87(1):125-7. doi: 10.1016/j.mimet.2011.07.014. Epub 2011 Jul 23.

37.

Abundance and diversity of mucosa-associated hydrogenotrophic microbes in the healthy human colon.

Nava GM, Carbonero F, Croix JA, Greenberg E, Gaskins HR.

ISME J. 2012 Jan;6(1):57-70. doi: 10.1038/ismej.2011.90. Epub 2011 Jul 14.

38.

Evolutionary divergence and biogeography of sympatric niche-differentiated bacterial populations.

Oakley BB, Carbonero F, van der Gast CJ, Hawkins RJ, Purdy KJ.

ISME J. 2010 Apr;4(4):488-97. doi: 10.1038/ismej.2009.146. Epub 2010 Jan 7.

PMID:
20054357
39.

Improving the isolation of anaerobes on solid media: the example of the fastidious Methanosaeta.

Carbonero F, Oakley BB, Purdy KJ.

J Microbiol Methods. 2010 Feb;80(2):203-5. doi: 10.1016/j.mimet.2009.11.013. Epub 2009 Dec 4. Erratum in: J Microbiol Methods. 2010 Jul;82(1):112.

PMID:
19969029

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