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Items: 1 to 50 of 68

1.

Zika virus enhances monocyte adhesion and transmigration favoring viral dissemination to neural cells.

Ayala-Nunez NV, Follain G, Delalande F, Hirschler A, Partiot E, Hale GL, Bollweg BC, Roels J, Chazal M, Bakoa F, Carocci M, Bourdoulous S, Faklaris O, Zaki SR, Eckly A, Uring-Lambert B, Doussau F, Cianferani S, Carapito C, Jacobs FMJ, Jouvenet N, Goetz JG, Gaudin R.

Nat Commun. 2019 Sep 27;10(1):4430. doi: 10.1038/s41467-019-12408-x.

2.

A Proteomic View of Cellular Responses to Anticancer Quinoline-Copper Complexes.

Dalzon B, Bons J, Diemer H, Collin-Faure V, Marie-Desvergne C, Dubosson M, Cianferani S, Carapito C, Rabilloud T.

Proteomes. 2019 Jun 24;7(2). pii: E26. doi: 10.3390/proteomes7020026.

3.

A Combined N-terminomics and Shotgun Proteomics Approach to Investigate the Responses of Human Cells to Rapamycin and Zinc at the Mitochondrial Level.

Bons J, Macron C, Aude-Garcia C, Vaca-Jacome SA, Rompais M, Cianférani S, Carapito C, Rabilloud T.

Mol Cell Proteomics. 2019 Jun;18(6):1085-1095. doi: 10.1074/mcp.RA118.001269. Epub 2019 Mar 15.

PMID:
31154437
4.

Tube-Gel: A Fast and Effective Sample Preparation Method for High-Throughput Quantitative Proteomics.

Muller L, Fornecker L, Cianferani S, Carapito C.

Methods Mol Biol. 2019;1959:123-127. doi: 10.1007/978-1-4939-9164-8_8.

PMID:
30852819
5.

Studying the Fate of Tumor Extracellular Vesicles at High Spatiotemporal Resolution Using the Zebrafish Embryo.

Hyenne V, Ghoroghi S, Collot M, Bons J, Follain G, Harlepp S, Mary B, Bauer J, Mercier L, Busnelli I, Lefebvre O, Fekonja N, Garcia-Leon MJ, Machado P, Delalande F, López AA, Silva SG, Verweij FJ, van Niel G, Djouad F, Peinado H, Carapito C, Klymchenko AS, Goetz JG.

Dev Cell. 2019 Feb 25;48(4):554-572.e7. doi: 10.1016/j.devcel.2019.01.014. Epub 2019 Feb 7.

PMID:
30745140
6.

Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma.

Fornecker LM, Muller L, Bertrand F, Paul N, Pichot A, Herbrecht R, Chenard MP, Mauvieux L, Vallat L, Bahram S, Cianférani S, Carapito R, Carapito C.

Sci Rep. 2019 Jan 29;9(1):895. doi: 10.1038/s41598-018-37273-4.

7.

Cytosolic Isocitrate Dehydrogenase from Arabidopsis thaliana Is Regulated by Glutathionylation.

Niazi AK, Bariat L, Riondet C, Carapito C, Mhamdi A, Noctor G, Reichheld JP.

Antioxidants (Basel). 2019 Jan 8;8(1). pii: E16. doi: 10.3390/antiox8010016.

8.

Multi-OMICS analyses unveil STAT1 as a potential modifier gene in mevalonate kinase deficiency.

Carapito R, Carapito C, Morlon A, Paul N, Vaca Jacome AS, Alsaleh G, Rolli V, Tahar O, Aouadi I, Rompais M, Delalande F, Pichot A, Georgel P, Messer L, Sibilia J, Cianferani S, Van Dorsselaer A, Bahram S.

Ann Rheum Dis. 2018 Nov;77(11):1675-1687. doi: 10.1136/annrheumdis-2018-213524. Epub 2018 Jul 20.

9.

Extended investigation of tube-gel sample preparation: a versatile and simple choice for high throughput quantitative proteomics.

Muller L, Fornecker L, Chion M, Van Dorsselaer A, Cianférani S, Rabilloud T, Carapito C.

Sci Rep. 2018 May 29;8(1):8260. doi: 10.1038/s41598-018-26600-4.

10.

Cleavable Binary Dyads: Simplifying Data Extraction and Increasing Storage Density in Digital Polymers.

Cavallo G, Poyer S, Amalian JA, Dufour F, Burel A, Carapito C, Charles L, Lutz JF.

Angew Chem Int Ed Engl. 2018 May 22;57(21):6266-6269. doi: 10.1002/anie.201803027. Epub 2018 Apr 27.

PMID:
29633445
11.

N-terminome and proteogenomic analysis of the Methylobacterium extorquens DM4 reference strain for dichloromethane utilization.

Bibi-Triki S, Husson G, Maucourt B, Vuilleumier S, Carapito C, Bringel F.

J Proteomics. 2018 May 15;179:131-139. doi: 10.1016/j.jprot.2018.03.012. Epub 2018 Mar 19.

PMID:
29567292
12.

Data-Independent Acquisition Coupled to Visible Laser-Induced Dissociation at 473 nm (DIA-LID) for Peptide-Centric Specific Analysis of Cysteine-Containing Peptide Subset.

Garcia L, Girod M, Rompais M, Dugourd P, Carapito C, Lemoine J.

Anal Chem. 2018 Mar 20;90(6):3928-3935. doi: 10.1021/acs.analchem.7b04821. Epub 2018 Feb 28.

PMID:
29465226
13.

Dual Data-Independent Acquisition Approach Combining Global HCP Profiling and Absolute Quantification of Key Impurities during Bioprocess Development.

Husson G, Delangle A, O'Hara J, Cianferani S, Gervais A, Van Dorsselaer A, Bracewell D, Carapito C.

Anal Chem. 2018 Jan 16;90(2):1241-1247. doi: 10.1021/acs.analchem.7b03965. Epub 2017 Dec 28.

PMID:
29235848
14.

Nucleolar Proteome Analysis and Proteasomal Activity Assays Reveal a Link between Nucleolus and 26S Proteasome in A. thaliana.

Montacié C, Durut N, Opsomer A, Palm D, Comella P, Picart C, Carpentier MC, Pontvianne F, Carapito C, Schleiff E, Sáez-Vásquez J.

Front Plant Sci. 2017 Oct 20;8:1815. doi: 10.3389/fpls.2017.01815. eCollection 2017.

15.

The siRNA suppressor RTL1 is redox-regulated through glutathionylation of a conserved cysteine in the double-stranded-RNA-binding domain.

Charbonnel C, Niazi AK, Elvira-Matelot E, Nowak E, Zytnicki M, de Bures A, Jobet E, Opsomer A, Shamandi N, Nowotny M, Carapito C, Reichheld JP, Vaucheret H, Sáez-Vásquez J.

Nucleic Acids Res. 2017 Nov 16;45(20):11891-11907. doi: 10.1093/nar/gkx820.

16.

Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods.

Carapito C, Duek P, Macron C, Seffals M, Rondel K, Delalande F, Lindskog C, Fréour T, Vandenbrouck Y, Lane L, Pineau C.

J Proteome Res. 2017 Dec 1;16(12):4340-4351. doi: 10.1021/acs.jproteome.7b00374. Epub 2017 Sep 26.

17.

A community proposal to integrate proteomics activities in ELIXIR.

Vizcaíno JA, Walzer M, Jiménez RC, Bittremieux W, Bouyssié D, Carapito C, Corrales F, Ferro M, Heck AJR, Horvatovich P, Hubalek M, Lane L, Laukens K, Levander F, Lisacek F, Novak P, Palmblad M, Piovesan D, Pühler A, Schwämmle V, Valkenborg D, van Rijswijk M, Vondrasek J, Eisenacher M, Martens L, Kohlbacher O.

F1000Res. 2017 Jun 13;6. pii: ELIXIR-875. doi: 10.12688/f1000research.11751.1. eCollection 2017.

18.

Doublet N-Terminal Oriented Proteomics for N-Terminomics and Proteolytic Processing Identification.

Westermann B, Jacome ASV, Rompais M, Carapito C, Schaeffer-Reiss C.

Methods Mol Biol. 2017;1574:77-90. doi: 10.1007/978-1-4939-6850-3_6.

PMID:
28315244
19.

Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update.

Vandenbrouck Y, Lane L, Carapito C, Duek P, Rondel K, Bruley C, Macron C, Gonzalez de Peredo A, Couté Y, Chaoui K, Com E, Gateau A, Hesse AM, Marcellin M, Méar L, Mouton-Barbosa E, Robin T, Burlet-Schiltz O, Cianferani S, Ferro M, Fréour T, Lindskog C, Garin J, Pineau C.

J Proteome Res. 2016 Nov 4;15(11):3998-4019. Epub 2016 Aug 23.

PMID:
27444420
20.

Two proteomic methodologies for defining N-termini of mature human mitochondrial aminoacyl-tRNA synthetases.

Carapito C, Kuhn L, Karim L, Rompais M, Rabilloud T, Schwenzer H, Sissler M.

Methods. 2017 Jan 15;113:111-119. doi: 10.1016/j.ymeth.2016.10.012. Epub 2016 Oct 26.

21.

Benchmarking sample preparation/digestion protocols reveals tube-gel being a fast and repeatable method for quantitative proteomics.

Muller L, Fornecker L, Van Dorsselaer A, Cianférani S, Carapito C.

Proteomics. 2016 Dec;16(23):2953-2961. doi: 10.1002/pmic.201600288.

PMID:
27749015
22.

MetAP1 and MetAP2 drive cell selectivity for a potent anti-cancer agent in synergy, by controlling glutathione redox state.

Frottin F, Bienvenut WV, Bignon J, Jacquet E, Vaca Jacome AS, Van Dorsselaer A, Cianferani S, Carapito C, Meinnel T, Giglione C.

Oncotarget. 2016 Sep 27;7(39):63306-63323. doi: 10.18632/oncotarget.11216.

23.

Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome.

Kusebauch U, Campbell DS, Deutsch EW, Chu CS, Spicer DA, Brusniak MY, Slagel J, Sun Z, Stevens J, Grimes B, Shteynberg D, Hoopmann MR, Blattmann P, Ratushny AV, Rinner O, Picotti P, Carapito C, Huang CY, Kapousouz M, Lam H, Tran T, Demir E, Aitchison JD, Sander C, Hood L, Aebersold R, Moritz RL.

Cell. 2016 Jul 28;166(3):766-778. doi: 10.1016/j.cell.2016.06.041. Epub 2016 Jul 21.

24.

Spatio-Temporal Detection of the Thiomonas Population and the Thiomonas Arsenite Oxidase Involved in Natural Arsenite Attenuation Processes in the Carnoulès Acid Mine Drainage.

Hovasse A, Bruneel O, Casiot C, Desoeuvre A, Farasin J, Hery M, Van Dorsselaer A, Carapito C, Arsène-Ploetze F.

Front Cell Dev Biol. 2016 Feb 1;4:3. doi: 10.3389/fcell.2016.00003. eCollection 2016.

25.

Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods.

Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A.

Data Brief. 2015 Dec 17;6:286-94. doi: 10.1016/j.dib.2015.11.063. eCollection 2016 Mar.

26.

Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset.

Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Van Dorssaeler A, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A.

J Proteomics. 2016 Jan 30;132:51-62. doi: 10.1016/j.jprot.2015.11.011. Epub 2015 Nov 14.

PMID:
26585461
27.

Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14.

Carapito C, Lane L, Benama M, Opsomer A, Mouton-Barbosa E, Garrigues L, Gonzalez de Peredo A, Burel A, Bruley C, Gateau A, Bouyssié D, Jaquinod M, Cianferani S, Burlet-Schiltz O, Van Dorsselaer A, Garin J, Vandenbrouck Y.

J Proteome Res. 2015 Sep 4;14(9):3621-34. doi: 10.1021/pr5010345. Epub 2015 Jul 22.

PMID:
26132440
28.

N-terminome analysis of the human mitochondrial proteome.

Vaca Jacome AS, Rabilloud T, Schaeffer-Reiss C, Rompais M, Ayoub D, Lane L, Bairoch A, Van Dorsselaer A, Carapito C.

Proteomics. 2015 Jul;15(14):2519-24. doi: 10.1002/pmic.201400617. Epub 2015 Jun 8.

PMID:
25944712
29.

Impact of anatase and rutile titanium dioxide nanoparticles on uptake carriers and efflux pumps in Caco-2 gut epithelial cells.

Dorier M, Brun E, Veronesi G, Barreau F, Pernet-Gallay K, Desvergne C, Rabilloud T, Carapito C, Herlin-Boime N, Carrière M.

Nanoscale. 2015 Apr 28;7(16):7352-60. doi: 10.1039/c5nr00505a.

PMID:
25825056
30.

The plant stigma exudate. A biochemically active extracellular environment for pollen germination?

Rejón JD, Delalande F, Schaeffer-Reiss C, Carapito C, Zienkiewicz K, Alché Jde D, Rodríguez-García MI, Van Dorsselaer A, Castro AJ.

Plant Signal Behav. 2014;9(4):e28274. doi: 10.4161/psb.28274.

PMID:
25764423
31.

Discovery and targeted proteomics on cutaneous biopsies infected by borrelia to investigate lyme disease.

Schnell G, Boeuf A, Westermann B, Jaulhac B, Lipsker D, Carapito C, Boulanger N, Ehret-Sabatier L.

Mol Cell Proteomics. 2015 May;14(5):1254-64. doi: 10.1074/mcp.M114.046540. Epub 2015 Feb 24.

32.

Differentiation between fresh and frozen-thawed sea bass (Dicentrarchus labrax) fillets using two-dimensional gel electrophoresis.

Ethuin P, Marlard S, Delosière M, Carapito C, Delalande F, Van Dorsselaer A, Dehaut A, Lencel V, Duflos G, Grard T.

Food Chem. 2015 Jun 1;176:294-301. doi: 10.1016/j.foodchem.2014.12.065. Epub 2014 Dec 23.

PMID:
25624236
33.

Proteomic tools to decipher microbial community structure and functioning.

Arsène-Ploetze F, Bertin PN, Carapito C.

Environ Sci Pollut Res Int. 2015 Sep;22(18):13599-612. doi: 10.1007/s11356-014-3898-0. Epub 2014 Dec 5. Review.

34.

MSDA, a proteomics software suite for in-depth Mass Spectrometry Data Analysis using grid computing.

Carapito C, Burel A, Guterl P, Walter A, Varrier F, Bertile F, Van Dorsselaer A.

Proteomics. 2014 May;14(9):1014-9. doi: 10.1002/pmic.201300415. Epub 2014 Mar 12.

PMID:
24677806
35.

Titanium dioxide nanoparticle impact and translocation through ex vivo, in vivo and in vitro gut epithelia.

Brun E, Barreau F, Veronesi G, Fayard B, Sorieul S, Chanéac C, Carapito C, Rabilloud T, Mabondzo A, Herlin-Boime N, Carrière M.

Part Fibre Toxicol. 2014 Mar 25;11:13. doi: 10.1186/1743-8977-11-13.

36.

Comparative expression study of the endo-G protein coupled receptor (GPCR) repertoire in human glioblastoma cancer stem-like cells, U87-MG cells and non malignant cells of neural origin unveils new potential therapeutic targets.

Fève M, Saliou JM, Zeniou M, Lennon S, Carapito C, Dong J, Van Dorsselaer A, Junier MP, Chneiweiss H, Cianférani S, Haiech J, Kilhoffer MC.

PLoS One. 2014 Mar 24;9(3):e91519. doi: 10.1371/journal.pone.0091519. eCollection 2014.

37.

The plant stigma exudate: a biochemically active extracellular environment for pollen germination?

Rejón JD, Delalande F, Schaeffer-Reiss C, Carapito C, Zienkiewicz K, de Dios Alché J, Isabel Rodríguez-García M, Van Dorsselaer A, Castro AJ.

Plant Signal Behav. 2014;9(3):e28274. Epub 2014 Jan 1.

38.

Bacterial protein signals are associated with Crohn's disease.

Juste C, Kreil DP, Beauvallet C, Guillot A, Vaca S, Carapito C, Mondot S, Sykacek P, Sokol H, Blon F, Lepercq P, Levenez F, Valot B, Carré W, Loux V, Pons N, David O, Schaeffer B, Lepage P, Martin P, Monnet V, Seksik P, Beaugerie L, Ehrlich SD, Gibrat JF, Van Dorsselaer A, Doré J.

Gut. 2014 Oct;63(10):1566-77. doi: 10.1136/gutjnl-2012-303786. Epub 2014 Jan 16.

39.

Rapid impact of phenanthrene and arsenic on bacterial community structure and activities in sand batches.

Cébron A, Arsène-Ploetze F, Bauda P, Bertin PN, Billard P, Carapito C, Devin S, Goulhen-Chollet F, Poirel J, Leyval C.

Microb Ecol. 2014 Jan;67(1):129-44. doi: 10.1007/s00248-013-0313-1. Epub 2013 Nov 5.

PMID:
24189653
40.

Proteomics profiling reveals novel proteins and functions of the plant stigma exudate.

Rejón JD, Delalande F, Schaeffer-Reiss C, Carapito C, Zienkiewicz K, de Dios Alché J, Rodríguez-García MI, Van Dorsselaer A, Castro AJ.

J Exp Bot. 2013 Dec;64(18):5695-705. doi: 10.1093/jxb/ert345. Epub 2013 Oct 22.

41.

Mass spectrometry-based sequencing and SRM-based quantitation of two novel vitellogenin isoforms in the leatherback sea turtle (Dermochelys coriacea).

Plumel MI, Wasselin T, Plot V, Strub JM, Van Dorsselaer A, Carapito C, Georges JY, Bertile F.

J Proteome Res. 2013 Sep 6;12(9):4122-35. doi: 10.1021/pr400444m. Epub 2013 Jul 26.

PMID:
23837631
42.

An improved stable isotope N-terminal labeling approach with light/heavy TMPP to automate proteogenomics data validation: dN-TOP.

Bertaccini D, Vaca S, Carapito C, Arsène-Ploetze F, Van Dorsselaer A, Schaeffer-Reiss C.

J Proteome Res. 2013 Jun 7;12(6):3063-70. doi: 10.1021/pr4002993. Epub 2013 May 16.

PMID:
23641718
43.

Cell-surface expression of the TLR homolog CD180 in circulating cells from splenic and nodal marginal zone lymphomas.

Miguet L, Lennon S, Baseggio L, Traverse-Glehen A, Berger F, Perrusson N, Chenard MP, Galoisy AC, Eischen A, Mayeur-Rousse C, Maar A, Fornecker L, Herbrecht R, Felman P, Van Dorsselaer A, Carapito C, Cianférani S, Mauvieux L.

Leukemia. 2013 Aug;27(8):1748-50. doi: 10.1038/leu.2013.3. Epub 2013 Jan 10. No abstract available.

PMID:
23302770
44.

Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics.

Hüttenhain R, Soste M, Selevsek N, Röst H, Sethi A, Carapito C, Farrah T, Deutsch EW, Kusebauch U, Moritz RL, Niméus-Malmström E, Rinner O, Aebersold R.

Sci Transl Med. 2012 Jul 11;4(142):142ra94. doi: 10.1126/scitranslmed.3003989.

45.

Targeted proteomics.

Carapito C, Aebersold R.

Proteomics. 2012 Apr;12(8):1073. doi: 10.1002/pmic.201270035. No abstract available.

PMID:
22577009
46.

In situ proteo-metabolomics reveals metabolite secretion by the acid mine drainage bio-indicator, Euglena mutabilis.

Halter D, Goulhen-Chollet F, Gallien S, Casiot C, Hamelin J, Gilard F, Heintz D, Schaeffer C, Carapito C, Van Dorsselaer A, Tcherkez G, Arsène-Ploetze F, Bertin PN.

ISME J. 2012 Jul;6(7):1391-402. doi: 10.1038/ismej.2011.198. Epub 2012 Jan 12.

47.

Taxonomic and functional prokaryote diversity in mildly arsenic-contaminated sediments.

Halter D, Cordi A, Gribaldo S, Gallien S, Goulhen-Chollet F, Heinrich-Salmeron A, Carapito C, Pagnout C, Montaut D, Seby F, Van Dorsselaer A, Schaeffer C, Bertin PN, Bauda P, Arsène-Ploetze F.

Res Microbiol. 2011 Nov;162(9):877-87. doi: 10.1016/j.resmic.2011.06.001. Epub 2011 Jun 13.

PMID:
21704701
48.

Detection of prion protein in urine-derived injectable fertility products by a targeted proteomic approach.

Van Dorsselaer A, Carapito C, Delalande F, Schaeffer-Reiss C, Thierse D, Diemer H, McNair DS, Krewski D, Cashman NR.

PLoS One. 2011 Mar 23;6(3):e17815. doi: 10.1371/journal.pone.0017815.

49.

Characterization of the active bacterial community involved in natural attenuation processes in arsenic-rich creek sediments.

Bruneel O, Volant A, Gallien S, Chaumande B, Casiot C, Carapito C, Bardil A, Morin G, Brown GE Jr, Personné CJ, Le Paslier D, Schaeffer C, Van Dorsselaer A, Bertin PN, Elbaz-Poulichet F, Arsène-Ploetze F.

Microb Ecol. 2011 May;61(4):793-810. doi: 10.1007/s00248-011-9808-9. Epub 2011 Feb 12.

PMID:
21318282
50.

Differences in Brachypelma albopilosa (Theraphosidae) hemolymph proteome between subadult and adult females.

Trabalon M, Carapito C, Voinot F, Martrette JM, Van Dorsselaer A, Gilbert C, Bertile F.

J Exp Zool A Ecol Genet Physiol. 2010 Dec 1;313(10):651-9. doi: 10.1002/jez.636. Epub 2010 Aug 17.

PMID:
20717997

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