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Items: 16

1.

Methods for comparative ChIA-PET and Hi-C data analysis.

Capurso D, Tang Z, Ruan Y.

Methods. 2020 Jan 1;170:69-74. doi: 10.1016/j.ymeth.2019.09.019. Epub 2019 Oct 16. Review.

2.

Multiplex chromatin interactions with single-molecule precision.

Zheng M, Tian SZ, Capurso D, Kim M, Maurya R, Lee B, Piecuch E, Gong L, Zhu JJ, Li Z, Wong CH, Ngan CY, Wang P, Ruan X, Wei CL, Ruan Y.

Nature. 2019 Feb;566(7745):558-562. doi: 10.1038/s41586-019-0949-1. Epub 2019 Feb 18.

3.

Mapping the genomic landscape of CRISPR-Cas9 cleavage.

Cameron P, Fuller CK, Donohoue PD, Jones BN, Thompson MS, Carter MM, Gradia S, Vidal B, Garner E, Slorach EM, Lau E, Banh LM, Lied AM, Edwards LS, Settle AH, Capurso D, Llaca V, Deschamps S, Cigan M, Young JK, May AP.

Nat Methods. 2017 Jun;14(6):600-606. doi: 10.1038/nmeth.4284. Epub 2017 May 1.

PMID:
28459459
4.

DNA Repair Profiling Reveals Nonrandom Outcomes at Cas9-Mediated Breaks.

van Overbeek M, Capurso D, Carter MM, Thompson MS, Frias E, Russ C, Reece-Hoyes JS, Nye C, Gradia S, Vidal B, Zheng J, Hoffman GR, Fuller CK, May AP.

Mol Cell. 2016 Aug 18;63(4):633-646. doi: 10.1016/j.molcel.2016.06.037. Epub 2016 Aug 4.

5.

Discovering hotspots in functional genomic data superposed on 3D chromatin configuration reconstructions.

Capurso D, Bengtsson H, Segal MR.

Nucleic Acids Res. 2016 Mar 18;44(5):2028-35. doi: 10.1093/nar/gkw070. Epub 2016 Feb 10.

6.

Chromosome position determines the success of double-strand break repair.

Lee CS, Wang RW, Chang HH, Capurso D, Segal MR, Haber JE.

Proc Natl Acad Sci U S A. 2016 Jan 12;113(2):E146-54. doi: 10.1073/pnas.1523660113. Epub 2015 Dec 29.

7.

Distance-based assessment of the localization of functional annotations in 3D genome reconstructions.

Capurso D, Segal MR.

BMC Genomics. 2014 Nov 18;15:992. doi: 10.1186/1471-2164-15-992.

8.

Reproducibility of 3D chromatin configuration reconstructions.

Segal MR, Xiong H, Capurso D, Vazquez M, Arsuaga J.

Biostatistics. 2014 Jul;15(3):442-56. doi: 10.1093/biostatistics/kxu003. Epub 2014 Feb 11.

9.

A histone arginine methylation localizes to nucleosomes in satellite II and III DNA sequences in the human genome.

Capurso D, Xiong H, Segal MR.

BMC Genomics. 2012 Nov 15;13:630. doi: 10.1186/1471-2164-13-630.

10.

Genome-wide ancestry association testing identifies a common European variant on 6q14.1 as a risk factor for asthma in African American subjects.

Torgerson DG, Capurso D, Ampleford EJ, Li X, Moore WC, Gignoux CR, Hu D, Eng C, Mathias RA, Busse WW, Castro M, Erzurum SC, Fitzpatrick AM, Gaston B, Israel E, Jarjour NN, Teague WG, Wenzel SE, Rodríguez-Santana JR, Rodríguez-Cintrón W, Avila PC, Ford JG, Barnes KC, Burchard EG, Howard TD, Bleecker ER, Meyers DA, Cox NJ, Ober C, Nicolae DL.

J Allergy Clin Immunol. 2012 Sep;130(3):622-629.e9. doi: 10.1016/j.jaci.2012.03.045. Epub 2012 May 18.

11.

Resequencing candidate genes implicates rare variants in asthma susceptibility.

Torgerson DG, Capurso D, Mathias RA, Graves PE, Hernandez RD, Beaty TH, Bleecker ER, Raby BA, Meyers DA, Barnes KC, Weiss ST, Martinez FD, Nicolae DL, Ober C.

Am J Hum Genet. 2012 Feb 10;90(2):273-81. doi: 10.1016/j.ajhg.2012.01.008.

12.

Sequence-based classification using discriminatory motif feature selection.

Xiong H, Capurso D, Sen S, Segal MR.

PLoS One. 2011;6(11):e27382. doi: 10.1371/journal.pone.0027382. Epub 2011 Nov 10.

13.

Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.

Torgerson DG, Ampleford EJ, Chiu GY, Gauderman WJ, Gignoux CR, Graves PE, Himes BE, Levin AM, Mathias RA, Hancock DB, Baurley JW, Eng C, Stern DA, Celedón JC, Rafaels N, Capurso D, Conti DV, Roth LA, Soto-Quiros M, Togias A, Li X, Myers RA, Romieu I, Van Den Berg DJ, Hu D, Hansel NN, Hernandez RD, Israel E, Salam MT, Galanter J, Avila PC, Avila L, Rodriquez-Santana JR, Chapela R, Rodriguez-Cintron W, Diette GB, Adkinson NF, Abel RA, Ross KD, Shi M, Faruque MU, Dunston GM, Watson HR, Mantese VJ, Ezurum SC, Liang L, Ruczinski I, Ford JG, Huntsman S, Chung KF, Vora H, Li X, Calhoun WJ, Castro M, Sienra-Monge JJ, del Rio-Navarro B, Deichmann KA, Heinzmann A, Wenzel SE, Busse WW, Gern JE, Lemanske RF Jr, Beaty TH, Bleecker ER, Raby BA, Meyers DA, London SJ; Mexico City Childhood Asthma Study (MCAAS), Gilliland FD; Children's Health Study (CHS) and HARBORS study, Burchard EG; Genetics of Asthma in Latino Americans (GALA) Study, Study of Genes-Environment and Admixture in Latino Americans (GALA2) and Study of African Americans, Asthma, Genes & Environments (SAGE), Martinez FD; Childhood Asthma Research and Education (CARE) Network, Weiss ST; Childhood Asthma Management Program (CAMP), Williams LK; Study of Asthma Phenotypes and Pharmacogenomic Interactions by Race-Ethnicity (SAPPHIRE), Barnes KC; Genetic Research on Asthma in African Diaspora (GRAAD) Study, Ober C, Nicolae DL.

Nat Genet. 2011 Jul 31;43(9):887-92. doi: 10.1038/ng.888.

14.

Yersinia pestis can bypass protective antibodies to LcrV and activation with gamma interferon to survive and induce apoptosis in murine macrophages.

Noel BL, Lilo S, Capurso D, Hill J, Bliska JB.

Clin Vaccine Immunol. 2009 Oct;16(10):1457-66. doi: 10.1128/CVI.00172-09. Epub 2009 Aug 26.

15.

CHD5 is a tumor suppressor at human 1p36.

Bagchi A, Papazoglu C, Wu Y, Capurso D, Brodt M, Francis D, Bredel M, Vogel H, Mills AA.

Cell. 2007 Feb 9;128(3):459-75.

16.

[Herpetic viruses and renal transplantation].

Morrone LF, Capurso D, D'Elia F, Di Paolo S, Grandaliano G, Marangi AL, Schena A, Stallone G, Tarantino G; Gruppo di Studio Apulo-Lucano sul Trapianto Renale.

G Ital Nefrol. 2002 May-Jun;19(3):316-25. Review. Italian.

PMID:
12195400

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