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Items: 42


KIAA1429 acts as an oncogenic factor in breast cancer by regulating CDK1 in an N6-methyladenosine-independent manner.

Qian JY, Gao J, Sun X, Cao MD, Shi L, Xia TS, Zhou WB, Wang S, Ding Q, Wei JF.

Oncogene. 2019 Aug;38(33):6123-6141. doi: 10.1038/s41388-019-0861-z. Epub 2019 Jul 8.


Correction to: Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning.

Teng H, Cao MD, Hall MB, Duarte T, Wang S, Coin LJM.

Gigascience. 2019 May 1;8(5). pii: giz049. doi: 10.1093/gigascience/giz049. No abstract available.


Canis familiaris allergen Can f 7: Expression, purification and analysis of B cell epitopes in Chinese children with dog allergies.

Wang RQ, Wang YJ, Xu ZQ, Zhou YJ, Cao MD, Zhu W, Sun JL, Wei JF.

Int J Mol Med. 2019 Mar;43(3):1531-1541. doi: 10.3892/ijmm.2019.4065. Epub 2019 Jan 15.


Octapeptin C4 and polymyxin resistance occur via distinct pathways in an epidemic XDR Klebsiella pneumoniae ST258 isolate.

Pitt ME, Cao MD, Butler MS, Ramu S, Ganesamoorthy D, Blaskovich MAT, Coin LJM, Cooper MA.

J Antimicrob Chemother. 2019 Mar 1;74(3):582-593. doi: 10.1093/jac/dky458.


Ongoing human chromosome end extension revealed by analysis of BioNano and nanopore data.

Shao H, Zhou C, Cao MD, Coin LJM.

Sci Rep. 2018 Nov 9;8(1):16616. doi: 10.1038/s41598-018-34774-0.


GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing.

Ganesamoorthy D, Cao MD, Duarte T, Chen W, Coin L.

BMC Bioinformatics. 2018 Jul 16;19(1):267. doi: 10.1186/s12859-018-2282-3.


npInv: accurate detection and genotyping of inversions using long read sub-alignment.

Shao H, Ganesamoorthy D, Duarte T, Cao MD, Hoggart CJ, Coin LJM.

BMC Bioinformatics. 2018 Jul 13;19(1):261. doi: 10.1186/s12859-018-2252-9.


Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning.

Teng H, Cao MD, Hall MB, Duarte T, Wang S, Coin LJM.

Gigascience. 2018 May 1;7(5). doi: 10.1093/gigascience/giy037. Erratum in: Gigascience. 2019 May 1;8(5):.


Multifactorial chromosomal variants regulate polymyxin resistance in extensively drug-resistant Klebsiella pneumoniae.

Pitt ME, Elliott AG, Cao MD, Ganesamoorthy D, Karaiskos I, Giamarellou H, Abboud CS, Blaskovich MAT, Cooper MA, Coin LJM.

Microb Genom. 2018 Mar;4(3). doi: 10.1099/mgen.0.000158. Epub 2018 Feb 12.


Canis familiaris allergen Can f 6: expression, purification and analysis of B-cell epitopes in Chinese dog allergic children.

Wang YJ, Li L, Song WJ, Zhou YJ, Cao MD, Zuo XR, Wei JF.

Oncotarget. 2017 Oct 13;8(53):90796-90807. doi: 10.18632/oncotarget.21822. eCollection 2017 Oct 31.


Expression, purification and epitope analysis of Pla a 2 allergen from Platanus acerifolia pollen.

Wang DW, Ni WW, Zhou YJ, Huang W, Cao MD, Meng L, Wei JF.

Mol Med Rep. 2018 Jan;17(1):394-399. doi: 10.3892/mmr.2017.7883. Epub 2017 Oct 26.


Simulating the dynamics of targeted capture sequencing with CapSim.

Cao MD, Ganesamoorthy D, Zhou C, Coin LJM.

Bioinformatics. 2018 Mar 1;34(5):873-874. doi: 10.1093/bioinformatics/btx691.


Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode.

Nguyen SH, Duarte TPS, Coin LJM, Cao MD.

Bioinformatics. 2017 Dec 15;33(24):3988-3990. doi: 10.1093/bioinformatics/btx537.


Two New Preyssler-Type Polyoxometalate-Based Coordination Polymers and Their Application in Horseradish Peroxidase Immobilization.

Du J, Cao MD, Feng SL, Su F, Sang XJ, Zhang LC, You WS, Yang M, Zhu ZM.

Chemistry. 2017 Oct 17;23(58):14614-14622. doi: 10.1002/chem.201703158. Epub 2017 Sep 20.


Expression and purification of a major allergen, Pla a 1, from Platanus acerifolia pollen and the preparation of its monoclonal antibody.

Ni WW, Huang W, Wu DQ, Zhou YJ, Ji CM, Cao MD, Guo M, Sun JL, Wei JF.

Mol Med Rep. 2017 Sep;16(3):2887-2892. doi: 10.3892/mmr.2017.6899. Epub 2017 Jun 30.


Expression, purification and epitope analysis of Pla a 3 allergen from Platanus acerifolia pollen.

Ni WW, Wang LB, Zhou YJ, Cao MD, Huang W, Guo M, Ji CM, Sun JL, Wei JF.

Mol Med Rep. 2017 Sep;16(3):2851-2855. doi: 10.3892/mmr.2017.6867. Epub 2017 Jun 28.


Tryptase inhibitors: a patent review.

Ni WW, Cao MD, Huang W, Meng L, Wei JF.

Expert Opin Ther Pat. 2017 Aug;27(8):919-928. doi: 10.1080/13543776.2017.1322064. Epub 2017 May 3. Review.


Scaffolding and completing genome assemblies in real-time with nanopore sequencing.

Cao MD, Nguyen SH, Ganesamoorthy D, Elliott AG, Cooper MA, Coin LJ.

Nat Commun. 2017 Feb 20;8:14515. doi: 10.1038/ncomms14515.


Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION(TM) sequencing.

Cao MD, Ganesamoorthy D, Elliott AG, Zhang H, Cooper MA, Coin LJ.

Gigascience. 2016 Jul 26;5(1):32. doi: 10.1186/s13742-016-0137-2.


Targeting choline phospholipid metabolism: GDPD5 and GDPD6 silencing decrease breast cancer cell proliferation, migration, and invasion.

Cao MD, Cheng M, Rizwan A, Jiang L, Krishnamachary B, Bhujwalla ZM, Bathen TF, Glunde K.

NMR Biomed. 2016 Aug;29(8):1098-107. doi: 10.1002/nbm.3573. Epub 2016 Jun 30.


Complete Genome Sequence of Klebsiella quasipneumoniae subsp. similipneumoniae Strain ATCC 700603.

Elliott AG, Ganesamoorthy D, Coin L, Cooper MA, Cao MD.

Genome Announc. 2016 May 26;4(3). pii: e00438-16. doi: 10.1128/genomeA.00438-16.


Statistical Enrichment of Epigenetic States Around Triplet Repeats that Can Undergo Expansions.

Essebier A, Vera Wolf P, Cao MD, Carroll BJ, Balasubramanian S, Bodén M.

Front Neurosci. 2016 Mar 8;10:92. doi: 10.3389/fnins.2016.00092. eCollection 2016.


Robust Estimation of Evolutionary Distances with Information Theory.

Cao MD, Allison L, Dix TI, Bodén M.

Mol Biol Evol. 2016 May;33(5):1349-57. doi: 10.1093/molbev/msw019. Epub 2016 Feb 23.


Realtime analysis and visualization of MinION sequencing data with npReader.

Cao MD, Ganesamoorthy D, Cooper MA, Coin LJ.

Bioinformatics. 2016 Mar 1;32(5):764-6. doi: 10.1093/bioinformatics/btv658. Epub 2015 Nov 10.


High-resolution magic-angle-spinning NMR spectroscopy of intact tissue.

Giskeødegård GF, Cao MD, Bathen TF.

Methods Mol Biol. 2015;1277:37-50. doi: 10.1007/978-1-4939-2377-9_4.


Metabolic characterization of triple negative breast cancer.

Cao MD, Lamichhane S, Lundgren S, Bofin A, Fjøsne H, Giskeødegård GF, Bathen TF.

BMC Cancer. 2014 Dec 12;14:941. doi: 10.1186/1471-2407-14-941.


Silencing of the glycerophosphocholine phosphodiesterase GDPD5 alters the phospholipid metabolite profile in a breast cancer model in vivo as monitored by (31) P MRS.

Wijnen JP, Jiang L, Greenwood TR, Cheng M, Döpkens M, Cao MD, Bhujwalla ZM, Krishnamachary B, Klomp DW, Glunde K.

NMR Biomed. 2014 Jun;27(6):692-9. doi: 10.1002/nbm.3106. Epub 2014 Apr 24.


Phospholipase D1 and choline kinase-α are interactive targets in breast cancer.

Gadiya M, Mori N, Cao MD, Mironchik Y, Kakkad S, Gribbestad IS, Glunde K, Krishnamachary B, Bhujwalla ZM.

Cancer Biol Ther. 2014 May;15(5):593-601. doi: 10.4161/cbt.28165. Epub 2014 Feb 20.


Sequencing technologies and tools for short tandem repeat variation detection.

Cao MD, Balasubramanian S, Bodén M.

Brief Bioinform. 2015 Mar;16(2):193-204. doi: 10.1093/bib/bbu001. Epub 2014 Feb 6. Review.


Inferring short tandem repeat variation from paired-end short reads.

Cao MD, Tasker E, Willadsen K, Imelfort M, Vishwanathan S, Sureshkumar S, Balasubramanian S, Bodén M.

Nucleic Acids Res. 2014 Feb;42(3):e16. doi: 10.1093/nar/gkt1313. Epub 2013 Dec 17.


Repeat-encoded poly-Q tracts show statistical commonalities across species.

Willadsen K, Cao MD, Wiles J, Balasubramanian S, Bodén M.

BMC Genomics. 2013 Feb 2;14:76. doi: 10.1186/1471-2164-14-76.


Glycerophosphocholine (GPC) is a poorly understood biomarker in breast cancer.

Moestue SA, Giskeødegård GF, Cao MD, Bathen TF, Gribbestad IS.

Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):E2506; author reply E2507. Epub 2012 Jul 31. No abstract available.


Emerging technologies for telemedicine.

Cao MD, Shimizu S, Antoku Y, Torata N, Kudo K, Okamura K, Nakashima N, Tanaka M.

Korean J Radiol. 2012 Jan-Feb;13 Suppl 1:S21-30. doi: 10.3348/kjr.2012.13.S1.S21. Epub 2012 Apr 23. Erratum in: Korean J Radiol. 2012 Jul-Aug;13(4):521. Minh, Cao Duc [corrected to Cao, Minh Duc].


Glycerophosphodiester phosphodiesterase domain containing 5 (GDPD5) expression correlates with malignant choline phospholipid metabolite profiles in human breast cancer.

Cao MD, Döpkens M, Krishnamachary B, Vesuna F, Gadiya MM, Lønning PE, Bhujwalla ZM, Gribbestad IS, Glunde K.

NMR Biomed. 2012 Sep;25(9):1033-42. doi: 10.1002/nbm.2766. Epub 2012 Jan 26.


Prognostic value of metabolic response in breast cancer patients receiving neoadjuvant chemotherapy.

Cao MD, Giskeødegård GF, Bathen TF, Sitter B, Bofin A, Lønning PE, Lundgren S, Gribbestad IS.

BMC Cancer. 2012 Jan 25;12:39. doi: 10.1186/1471-2407-12-39.


Predicting long-term survival and treatment response in breast cancer patients receiving neoadjuvant chemotherapy by MR metabolic profiling.

Cao MD, Sitter B, Bathen TF, Bofin A, Lønning PE, Lundgren S, Gribbestad IS.

NMR Biomed. 2012 Feb;25(2):369-78. doi: 10.1002/nbm.1762. Epub 2011 Aug 8.


A biological compression model and its applications.

Cao MD, Dix TI, Allison L.

Adv Exp Med Biol. 2011;696:657-66. doi: 10.1007/978-1-4419-7046-6_67.


A genome alignment algorithm based on compression.

Cao MD, Dix TI, Allison L.

BMC Bioinformatics. 2010 Dec 16;11:599. doi: 10.1186/1471-2105-11-599.


Effects of EGF and bFGF on expression of microtubule-associated protein tau and MAP-2 mRNA in human umbilical cord mononuclear cells.

Yan WH, Cao MD, Liu JR, Xu Y, Han XF, Xing Y, Wang JZ.

Cell Biol Int. 2005 Feb;29(2):153-7. Epub 2005 Jan 12.


Modulation effects of human immature and mature dendritic cells on glatiramer acetate specific T cell lines in vitro.

Cao MD, Sanna A, Xiao BG.

Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2003 Aug;11(4):409-15.


Influence of gamma irradiation on phenotype and function of human dendritic cells in vitro.

Cao MD, Xiao BG.

Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2003 Jun;11(3):282-6.


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