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Items: 19

1.

Alternative splicing regulates stochastic NLRP3 activity.

Hoss F, Mueller JL, Rojas Ringeling F, Rodriguez-Alcazar JF, Brinkschulte R, Seifert G, Stahl R, Broderick L, Putnam CD, Kolodner RD, Canzar S, Geyer M, Hoffman HM, Latz E.

Nat Commun. 2019 Jul 19;10(1):3238. doi: 10.1038/s41467-019-11076-1.

2.

A Common Embryonic Origin of Stem Cells Drives Developmental and Adult Neurogenesis.

Berg DA, Su Y, Jimenez-Cyrus D, Patel A, Huang N, Morizet D, Lee S, Shah R, Ringeling FR, Jain R, Epstein JA, Wu QF, Canzar S, Ming GL, Song H, Bond AM.

Cell. 2019 Apr 18;177(3):654-668.e15. doi: 10.1016/j.cell.2019.02.010. Epub 2019 Mar 28.

PMID:
30929900
3.

Proteome Analysis of Human Neutrophil Granulocytes From Patients With Monogenic Disease Using Data-independent Acquisition.

Grabowski P, Hesse S, Hollizeck S, Rohlfs M, Behrends U, Sherkat R, Tamary H, Ünal E, Somech R, Patıroğlu T, Canzar S, van der Werff Ten Bosch J, Klein C, Rappsilber J.

Mol Cell Proteomics. 2019 Apr;18(4):760-772. doi: 10.1074/mcp.RA118.001141. Epub 2019 Jan 10.

4.

Guided Reconstruction of Full-Length Isoforms from Short Reads by CIDANE.

Andreotti S, Canzar S.

Methods Mol Biol. 2019;1870:199-208. doi: 10.1007/978-1-4939-8808-2_15.

PMID:
30539557
5.

Genome wide association analysis in a mouse advanced intercross line.

Gonzales NM, Seo J, Hernandez Cordero AI, St Pierre CL, Gregory JS, Distler MG, Abney M, Canzar S, Lionikas A, Palmer AA.

Nat Commun. 2018 Dec 4;9(1):5162. doi: 10.1038/s41467-018-07642-8.

6.

Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources.

Sulakhe D, D'Souza M, Wang S, Balasubramanian S, Athri P, Xie B, Canzar S, Agam G, Gilliam TC, Maltsev N.

Brief Bioinform. 2018 Jun 21. doi: 10.1093/bib/bby047. [Epub ahead of print]

PMID:
29931155
7.

Tracking Alternatively Spliced Isoforms from Long Reads by SpliceHunter.

Kuang Z, Canzar S.

Methods Mol Biol. 2018;1751:73-88. doi: 10.1007/978-1-4939-7710-9_5.

PMID:
29508290
8.

Temporal Control of Mammalian Cortical Neurogenesis by m6A Methylation.

Yoon KJ, Ringeling FR, Vissers C, Jacob F, Pokrass M, Jimenez-Cyrus D, Su Y, Kim NS, Zhu Y, Zheng L, Kim S, Wang X, Doré LC, Jin P, Regot S, Zhuang X, Canzar S, He C, Ming GL, Song H.

Cell. 2017 Nov 2;171(4):877-889.e17. doi: 10.1016/j.cell.2017.09.003. Epub 2017 Sep 28.

9.

Short Read Mapping: An Algorithmic Tour.

Canzar S, Salzberg SL.

Proc IEEE Inst Electr Electron Eng. 2017 Mar;105(3):436-458. doi: 10.1109/JPROC.2015.2455551. Epub 2015 Sep 7.

10.

BASIC: BCR assembly from single cells.

Canzar S, Neu KE, Tang Q, Wilson PC, Khan AA.

Bioinformatics. 2017 Feb 1;33(3):425-427. doi: 10.1093/bioinformatics/btw631.

11.

The dynamic landscape of fission yeast meiosis alternative-splice isoforms.

Kuang Z, Boeke JD, Canzar S.

Genome Res. 2017 Jan;27(1):145-156. doi: 10.1101/gr.208041.116. Epub 2016 Nov 17.

12.

ModuleAlign: module-based global alignment of protein-protein interaction networks.

Hashemifar S, Ma J, Naveed H, Canzar S, Xu J.

Bioinformatics. 2016 Sep 1;32(17):i658-i664. doi: 10.1093/bioinformatics/btw447.

PMID:
27587686
13.

CIDANE: comprehensive isoform discovery and abundance estimation.

Canzar S, Andreotti S, Weese D, Reinert K, Klau GW.

Genome Biol. 2016 Jan 30;17:16. doi: 10.1186/s13059-015-0865-0.

14.

Resolving Conflicting Predictions from Multimapping Reads.

Canzar S, Elbassioni K, Jones M, Mestre J.

J Comput Biol. 2016 Mar;23(3):203-17. doi: 10.1089/cmb.2015.0164. Epub 2016 Jan 8.

PMID:
26745826
15.

The duplication-loss small phylogeny problem: from cherries to trees.

Andreotti S, Reinert K, Canzar S.

J Comput Biol. 2013 Sep;20(9):643-59. doi: 10.1089/cmb.2013.0057.

16.

GAGE-B: an evaluation of genome assemblers for bacterial organisms.

Magoc T, Pabinger S, Canzar S, Liu X, Su Q, Puiu D, Tallon LJ, Salzberg SL.

Bioinformatics. 2013 Jul 15;29(14):1718-25. doi: 10.1093/bioinformatics/btt273. Epub 2013 May 10.

17.

Charge group partitioning in biomolecular simulation.

Canzar S, El-Kebir M, Pool R, Elbassioni K, Mark AE, Geerke DP, Stougie L, Klau GW.

J Comput Biol. 2013 Mar;20(3):188-98. doi: 10.1089/cmb.2012.0239.

18.

CLEVER: clique-enumerating variant finder.

Marschall T, Costa IG, Canzar S, Bauer M, Klau GW, Schliep A, Schönhuth A.

Bioinformatics. 2012 Nov 15;28(22):2875-82. doi: 10.1093/bioinformatics/bts566. Epub 2012 Oct 11.

PMID:
23060616
19.

Computing H/D-exchange rates of single residues from data of proteolytic fragments.

Althaus E, Canzar S, Ehrler C, Emmett MR, Karrenbauer A, Marshall AG, Meyer-Bäse A, Tipton JD, Zhang HM.

BMC Bioinformatics. 2010 Aug 11;11:424. doi: 10.1186/1471-2105-11-424.

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