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Items: 17

1.

Solution Conformation of Bovine Leukemia Virus Gag Suggests an Elongated Structure.

Qualley DF, Cooper SE, Ross JL, Olson ED, Cantara WA, Musier-Forsyth K.

J Mol Biol. 2019 Mar 15;431(6):1203-1216. doi: 10.1016/j.jmb.2019.01.036. Epub 2019 Feb 4.

PMID:
30731090
2.

Discovery of Small-Molecule Antibiotics against a Unique tRNA-Mediated Regulation of Transcription in Gram-Positive Bacteria.

Frohlich KM, Weintraub SF, Bell JT, Todd GC, Väre VYP, Schneider R, Kloos ZA, Tabe ES, Cantara WA, Stark CJ, Onwuanaibe UJ, Duffy BC, Basanta-Sanchez M, Kitchen DB, McDonough KA, Agris PF.

ChemMedChem. 2019 Feb 1. doi: 10.1002/cmdc.201800744. [Epub ahead of print]

PMID:
30707489
3.

Analysis of discrete local variability and structural covariance in macromolecular assemblies using Cryo-EM and focused classification.

Zhang C, Cantara W, Jeon Y, Musier-Forsyth K, Grigorieff N, Lyumkis D.

Ultramicroscopy. 2018 Nov 29. pii: S0304-3991(18)30266-3. doi: 10.1016/j.ultramic.2018.11.016. [Epub ahead of print]

PMID:
30528101
4.

Human T-cell leukemia virus type 1 Gag domains have distinct RNA-binding specificities with implications for RNA packaging and dimerization.

Wu W, Hatterschide J, Syu YC, Cantara WA, Blower RJ, Hanson HM, Mansky LM, Musier-Forsyth K.

J Biol Chem. 2018 Oct 19;293(42):16261-16276. doi: 10.1074/jbc.RA118.005531. Epub 2018 Sep 14.

PMID:
30217825
5.

Argonaute-based programmable RNase as a tool for cleavage of highly-structured RNA.

Dayeh DM, Cantara WA, Kitzrow JP, Musier-Forsyth K, Nakanishi K.

Nucleic Acids Res. 2018 Sep 19;46(16):e98. doi: 10.1093/nar/gky496.

6.

Conformational and chemical selection by a trans-acting editing domain.

Danhart EM, Bakhtina M, Cantara WA, Kuzmishin AB, Ma X, Sanford BL, Vargas-Rodriguez O, Košutić M, Goto Y, Suga H, Nakanishi K, Micura R, Foster MP, Musier-Forsyth K.

Proc Natl Acad Sci U S A. 2017 Aug 15;114(33):E6774-E6783. doi: 10.1073/pnas.1703925114. Epub 2017 Aug 2. Erratum in: Proc Natl Acad Sci U S A. 2017 Nov 13;:. Vargas-Rodriguez, Oscar [added].

7.

Quality control by trans-editing factor prevents global mistranslation of non-protein amino acid α-aminobutyrate.

Bacusmo JM, Kuzmishin AB, Cantara WA, Goto Y, Suga H, Musier-Forsyth K.

RNA Biol. 2018;15(4-5):576-585. doi: 10.1080/15476286.2017.1353846. Epub 2017 Nov 3.

8.

RiboCAT: a new capillary electrophoresis data analysis tool for nucleic acid probing.

Cantara WA, Hatterschide J, Wu W, Musier-Forsyth K.

RNA. 2017 Feb;23(2):240-249. doi: 10.1261/rna.058404.116. Epub 2016 Nov 7.

9.

Analysis of RNA structure using small-angle X-ray scattering.

Cantara WA, Olson ED, Musier-Forsyth K.

Methods. 2017 Jan 15;113:46-55. doi: 10.1016/j.ymeth.2016.10.008. Epub 2016 Oct 21.

10.

New Structure Sheds Light on Selective HIV-1 Genomic RNA Packaging.

Olson ED, Cantara WA, Musier-Forsyth K.

Viruses. 2015 Aug 24;7(8):4826-35. doi: 10.3390/v7082846.

11.

Progress and outlook in structural biology of large viral RNAs.

Cantara WA, Olson ED, Forsyth KM.

Virus Res. 2014 Nov 26;193:24-38. doi: 10.1016/j.virusres.2014.06.007. Epub 2014 Jun 21. Review.

12.

Small-angle X-ray scattering-derived structure of the HIV-1 5' UTR reveals 3D tRNA mimicry.

Jones CP, Cantara WA, Olson ED, Musier-Forsyth K.

Proc Natl Acad Sci U S A. 2014 Mar 4;111(9):3395-400. doi: 10.1073/pnas.1319658111. Epub 2014 Feb 18.

13.

Expanded use of sense codons is regulated by modified cytidines in tRNA.

Cantara WA, Murphy FV 4th, Demirci H, Agris PF.

Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):10964-9. doi: 10.1073/pnas.1222641110. Epub 2013 Jun 18.

14.

Modifications modulate anticodon loop dynamics and codon recognition of E. coli tRNA(Arg1,2).

Cantara WA, Bilbille Y, Kim J, Kaiser R, Leszczyńska G, Malkiewicz A, Agris PF.

J Mol Biol. 2012 Mar 2;416(4):579-97. doi: 10.1016/j.jmb.2011.12.054. Epub 2012 Jan 3.

PMID:
22240457
15.

Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism.

Vendeix FA, Murphy FV 4th, Cantara WA, Leszczyńska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF.

J Mol Biol. 2012 Mar 2;416(4):467-85. doi: 10.1016/j.jmb.2011.12.048. Epub 2011 Dec 29.

16.

The RNA Modification Database, RNAMDB: 2011 update.

Cantara WA, Crain PF, Rozenski J, McCloskey JA, Harris KA, Zhang X, Vendeix FA, Fabris D, Agris PF.

Nucleic Acids Res. 2011 Jan;39(Database issue):D195-201. doi: 10.1093/nar/gkq1028. Epub 2010 Nov 10.

17.

Synthesis and investigation of the 5-formylcytidine modified, anticodon stem and loop of the human mitochondrial tRNAMet.

Lusic H, Gustilo EM, Vendeix FA, Kaiser R, Delaney MO, Graham WD, Moye VA, Cantara WA, Agris PF, Deiters A.

Nucleic Acids Res. 2008 Nov;36(20):6548-57. doi: 10.1093/nar/gkn703. Epub 2008 Oct 16.

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