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Items: 27

1.

Coding-Complete Genome Sequence of a Pollen-Associated Virus Belonging to the Secoviridae Family Recovered from a Japanese Apricot (Prunus mume) Metagenome Data Set.

Fetters AM, Cantalupo PG, Ashman TL, Pipas JM.

Microbiol Resour Announc. 2019 Oct 3;8(40). pii: e00881-19. doi: 10.1128/MRA.00881-19.

2.

Detecting viral sequences in NGS data.

Cantalupo PG, Pipas JM.

Curr Opin Virol. 2019 Aug 26;39:41-48. doi: 10.1016/j.coviro.2019.07.010. [Epub ahead of print] Review.

PMID:
31465960
3.

Human polyomavirus BKV infection of endothelial cells results in interferon pathway induction and persistence.

An P, Sáenz Robles MT, Duray AM, Cantalupo PG, Pipas JM.

PLoS Pathog. 2019 Jan 8;15(1):e1007505. doi: 10.1371/journal.ppat.1007505. eCollection 2019 Jan.

4.

Draft Genome Sequence of a Novel Rhabdovirus Isolated from Deinocerites Mosquitoes.

Xu CL, Cantalupo PG, Sáenz-Robles MT, Baldwin A, Fitzpatrick D, Norris DE, Jackson E, Pipas JM.

Genome Announc. 2018 May 10;6(19). pii: e01438-17. doi: 10.1128/genomeA.01438-17.

5.

Complete Genome Sequence of Pittsburgh Sewage-Associated Virus 1.

Cantalupo PG, Pipas JM.

Genome Announc. 2018 Mar 15;6(11). pii: e01460-17. doi: 10.1128/genomeA.01460-17.

6.

Identification of Head and Neck Cancer Subtypes Based on Human Papillomavirus Presence and E2F-Regulated Gene Expression.

Johnson ME, Cantalupo PG, Pipas JM.

mSphere. 2018 Jan 10;3(1). pii: e00580-17. doi: 10.1128/mSphere.00580-17. eCollection 2018 Jan-Feb.

7.

Viral sequences in human cancer.

Cantalupo PG, Katz JP, Pipas JM.

Virology. 2018 Jan 1;513:208-216. doi: 10.1016/j.virol.2017.10.017. Epub 2017 Nov 5.

8.

Multi-modality analysis supports APOBEC as a major source of mutations in head and neck squamous cell carcinoma.

Faden DL, Thomas S, Cantalupo PG, Agrawal N, Myers J, DeRisi J.

Oral Oncol. 2017 Nov;74:8-14. doi: 10.1016/j.oraloncology.2017.09.002. Epub 2017 Sep 13.

PMID:
29103756
9.

Complete Genome Sequence of a Polyomavirus Recovered from a Pomona Leaf-Nosed Bat (Hipposideros pomona) Metagenome Data Set.

Cantalupo PG, Buck CB, Pipas JM.

Genome Announc. 2017 Jan 19;5(3). pii: e01053-16. doi: 10.1128/genomeA.01053-16.

10.

Merkel Cell Polyomavirus Exhibits Dominant Control of the Tumor Genome and Transcriptome in Virus-Associated Merkel Cell Carcinoma.

Starrett GJ, Marcelus C, Cantalupo PG, Katz JP, Cheng J, Akagi K, Thakuria M, Rabinowits G, Wang LC, Symer DE, Pipas JM, Harris RS, DeCaprio JA.

MBio. 2017 Jan 3;8(1). pii: e02079-16. doi: 10.1128/mBio.02079-16.

11.

Transcriptome regulation and chromatin occupancy by E2F3 and MYC in mice.

Tang X, Liu H, Srivastava A, Pécot T, Chen Z, Wang Q, Huang K, Sáenz-Robles MT, Cantalupo P, Pipas J, Leone G.

Sci Data. 2016 Feb 16;3:160008. doi: 10.1038/sdata.2016.8.

12.

Whole-Genome Sequencing of a Single Viral Species from a Highly Heterogeneous Sample.

Han HS, Cantalupo PG, Rotem A, Cockrell SK, Carbonnaux M, Pipas JM, Weitz DA.

Angew Chem Int Ed Engl. 2015 Nov 16;54(47):13985-8. doi: 10.1002/anie.201507047. Epub 2015 Aug 28.

13.

Artifact-Free Quantification and Sequencing of Rare Recombinant Viruses by Using Drop-Based Microfluidics.

Tao Y, Rotem A, Zhang H, Cockrell SK, Koehler SA, Chang CB, Ung LW, Cantalupo PG, Ren Y, Lin JS, Feldman AB, Wobus CE, Pipas JM, Weitz DA.

Chembiochem. 2015 Oct 12;16(15):2167-71. doi: 10.1002/cbic.201500384. Epub 2015 Sep 7.

14.

Redeployment of Myc and E2f1-3 drives Rb-deficient cell cycles.

Liu H, Tang X, Srivastava A, Pécot T, Daniel P, Hemmelgarn B, Reyes S, Fackler N, Bajwa A, Kladney R, Koivisto C, Chen Z, Wang Q, Huang K, Machiraju R, Sáenz-Robles MT, Cantalupo P, Pipas JM, Leone G.

Nat Cell Biol. 2015 Aug;17(8):1036-48. doi: 10.1038/ncb3210. Epub 2015 Jul 20.

15.

HeLa nucleic acid contamination in the cancer genome atlas leads to the misidentification of human papillomavirus 18.

Cantalupo PG, Katz JP, Pipas JM.

J Virol. 2015 Apr;89(8):4051-7. doi: 10.1128/JVI.03365-14. Epub 2015 Jan 28.

16.

A retinoblastoma allele that is mutated at its common E2F interaction site inhibits cell proliferation in gene-targeted mice.

Cecchini MJ, Thwaites MJ, Talluri S, MacDonald JI, Passos DT, Chong JL, Cantalupo P, Stafford PM, Sáenz-Robles MT, Francis SM, Pipas JM, Leone G, Welch I, Dick FA.

Mol Cell Biol. 2014 Jun;34(11):2029-45. doi: 10.1128/MCB.01589-13. Epub 2014 Mar 24.

17.

Raw sewage harbors diverse viral populations.

Cantalupo PG, Calgua B, Zhao G, Hundesa A, Wier AD, Katz JP, Grabe M, Hendrix RW, Girones R, Wang D, Pipas JM.

MBio. 2011 Oct 4;2(5). pii: e00180-11. doi: 10.1128/mBio.00180-11. Print 2011.

18.

Induction of interferon-stimulated genes by Simian virus 40 T antigens.

Rathi AV, Cantalupo PG, Sarkar SN, Pipas JM.

Virology. 2010 Oct 25;406(2):202-11. doi: 10.1016/j.virol.2010.07.018. Epub 2010 Aug 7.

19.

E2f1-3 switch from activators in progenitor cells to repressors in differentiating cells.

Chong JL, Wenzel PL, Sáenz-Robles MT, Nair V, Ferrey A, Hagan JP, Gomez YM, Sharma N, Chen HZ, Ouseph M, Wang SH, Trikha P, Culp B, Mezache L, Winton DJ, Sansom OJ, Chen D, Bremner R, Cantalupo PG, Robinson ML, Pipas JM, Leone G.

Nature. 2009 Dec 17;462(7275):930-4. doi: 10.1038/nature08677.

20.

Simian virus 40 T-antigen-mediated gene regulation in enterocytes is controlled primarily by the Rb-E2F pathway.

Rathi AV, Sáenz Robles MT, Cantalupo PG, Whitehead RH, Pipas JM.

J Virol. 2009 Sep;83(18):9521-31. doi: 10.1128/JVI.00583-09. Epub 2009 Jul 1.

21.

Cell-type specific regulation of gene expression by simian virus 40 T antigens.

Cantalupo PG, Sáenz-Robles MT, Rathi AV, Beerman RW, Patterson WH, Whitehead RH, Pipas JM.

Virology. 2009 Mar 30;386(1):183-91. doi: 10.1016/j.virol.2008.12.038. Epub 2009 Feb 8.

22.

Repression of intestinal drug metabolizing enzymes by the SV40 large T antigen.

Sáenz-Robles MT, Toma D, Cantalupo P, Zhou J, Gong H, Edwards C, Pipas JM, Xie W.

Oncogene. 2007 Aug 2;26(35):5124-31. Epub 2007 Mar 5.

PMID:
17334401
23.

Complete nucleotide sequence of polyomavirus SA12.

Cantalupo P, Doering A, Sullivan CS, Pal A, Peden KW, Lewis AM, Pipas JM.

J Virol. 2005 Oct;79(20):13094-104.

25.

Expression of SV40 large T antigen in baculovirus systems and purification by immunoaffinity chromatography.

Cantalupo P, Sáenz-Robles MT, Pipas JM.

Methods Enzymol. 1999;306:297-307. No abstract available.

PMID:
10432461
26.

trans-Dominant and non-trans-dominant mutant simian virus 40 large T antigens show distinct responses to ATP.

Castellino AM, Cantalupo P, Marks IM, Vartikar JV, Peden KW, Pipas JM.

J Virol. 1997 Oct;71(10):7549-59.

27.

The amino-terminal transforming region of simian virus 40 large T and small t antigens functions as a J domain.

Srinivasan A, McClellan AJ, Vartikar J, Marks I, Cantalupo P, Li Y, Whyte P, Rundell K, Brodsky JL, Pipas JM.

Mol Cell Biol. 1997 Aug;17(8):4761-73.

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