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Items: 1 to 50 of 52

1.

Scientific integrity issues in Environmental Toxicology and Chemistry: Improving research reproducibility, credibility, and transparency.

Mebane CA, Sumpter JP, Fairbrother A, Augspurger TP, Canfield TJ, Goodfellow WL, Guiney PD, LeHuray A, Maltby L, Mayfield DB, McLaughlin MJ, Ortego LS, Schlekat T, Scroggins RP, Verslycke TA.

Integr Environ Assess Manag. 2019 May;15(3):320-344. doi: 10.1002/ieam.4119. Epub 2019 Feb 28. Review.

PMID:
30609273
2.

Breast Reconstruction Among Commercially Insured Women With Breast Cancer in the United States.

Barnow A, Canfield T, Liao R, Yadalam S, Kalsekar I, Khanna R.

Ann Plast Surg. 2018 Aug;81(2):220-227. doi: 10.1097/SAP.0000000000001454.

PMID:
29781849
3.

Using ecological production functions to link ecological processes to ecosystem services.

Bruins RJ, Canfield TJ, Duke C, Kapustka L, Nahlik AM, Schäfer RB.

Integr Environ Assess Manag. 2017 Jan;13(1):52-61. doi: 10.1002/ieam.1842. Epub 2016 Sep 28.

4.

Role of DNA Methylation in Modulating Transcription Factor Occupancy.

Maurano MT, Wang H, John S, Shafer A, Canfield T, Lee K, Stamatoyannopoulos JA.

Cell Rep. 2015 Aug 18;12(7):1184-95. doi: 10.1016/j.celrep.2015.07.024. Epub 2015 Aug 6.

5.

DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements.

Wilken MS, Brzezinski JA, La Torre A, Siebenthall K, Thurman R, Sabo P, Sandstrom RS, Vierstra J, Canfield TK, Hansen RS, Bender MA, Stamatoyannopoulos J, Reh TA.

Epigenetics Chromatin. 2015 Feb 28;8:8. doi: 10.1186/1756-8935-8-8. eCollection 2015.

6.

Integrative analysis of 111 reference human epigenomes.

Roadmap Epigenomics Consortium, Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, Sarkar A, Quon G, Sandstrom RS, Eaton ML, Wu YC, Pfenning AR, Wang X, Claussnitzer M, Liu Y, Coarfa C, Harris RA, Shoresh N, Epstein CB, Gjoneska E, Leung D, Xie W, Hawkins RD, Lister R, Hong C, Gascard P, Mungall AJ, Moore R, Chuah E, Tam A, Canfield TK, Hansen RS, Kaul R, Sabo PJ, Bansal MS, Carles A, Dixon JR, Farh KH, Feizi S, Karlic R, Kim AR, Kulkarni A, Li D, Lowdon R, Elliott G, Mercer TR, Neph SJ, Onuchic V, Polak P, Rajagopal N, Ray P, Sallari RC, Siebenthall KT, Sinnott-Armstrong NA, Stevens M, Thurman RE, Wu J, Zhang B, Zhou X, Beaudet AE, Boyer LA, De Jager PL, Farnham PJ, Fisher SJ, Haussler D, Jones SJ, Li W, Marra MA, McManus MT, Sunyaev S, Thomson JA, Tlsty TD, Tsai LH, Wang W, Waterland RA, Zhang MQ, Chadwick LH, Bernstein BE, Costello JF, Ecker JR, Hirst M, Meissner A, Milosavljevic A, Ren B, Stamatoyannopoulos JA, Wang T, Kellis M.

Nature. 2015 Feb 19;518(7539):317-30. doi: 10.1038/nature14248.

7.

Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.

Vierstra J, Rynes E, Sandstrom R, Zhang M, Canfield T, Hansen RS, Stehling-Sun S, Sabo PJ, Byron R, Humbert R, Thurman RE, Johnson AK, Vong S, Lee K, Bates D, Neri F, Diegel M, Giste E, Haugen E, Dunn D, Wilken MS, Josefowicz S, Samstein R, Chang KH, Eichler EE, De Bruijn M, Reh TA, Skoultchi A, Rudensky A, Orkin SH, Papayannopoulou T, Treuting PM, Selleri L, Kaul R, Groudine M, Bender MA, Stamatoyannopoulos JA.

Science. 2014 Nov 21;346(6212):1007-12. doi: 10.1126/science.1246426.

8.

Topologically associating domains are stable units of replication-timing regulation.

Pope BD, Ryba T, Dileep V, Yue F, Wu W, Denas O, Vera DL, Wang Y, Hansen RS, Canfield TK, Thurman RE, Cheng Y, Gülsoy G, Dennis JH, Snyder MP, Stamatoyannopoulos JA, Taylor J, Hardison RC, Kahveci T, Ren B, Gilbert DM.

Nature. 2014 Nov 20;515(7527):402-5. doi: 10.1038/nature13986.

9.

Conservation of trans-acting circuitry during mammalian regulatory evolution.

Stergachis AB, Neph S, Sandstrom R, Haugen E, Reynolds AP, Zhang M, Byron R, Canfield T, Stelhing-Sun S, Lee K, Thurman RE, Vong S, Bates D, Neri F, Diegel M, Giste E, Dunn D, Vierstra J, Hansen RS, Johnson AK, Sabo PJ, Wilken MS, Reh TA, Treuting PM, Kaul R, Groudine M, Bender MA, Borenstein E, Stamatoyannopoulos JA.

Nature. 2014 Nov 20;515(7527):365-70. doi: 10.1038/nature13972.

10.

A comparative encyclopedia of DNA elements in the mouse genome.

Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, Rynes E, Kirilusha A, Marinov GK, Williams BA, Trout D, Amrhein H, Fisher-Aylor K, Antoshechkin I, DeSalvo G, See LH, Fastuca M, Drenkow J, Zaleski C, Dobin A, Prieto P, Lagarde J, Bussotti G, Tanzer A, Denas O, Li K, Bender MA, Zhang M, Byron R, Groudine MT, McCleary D, Pham L, Ye Z, Kuan S, Edsall L, Wu YC, Rasmussen MD, Bansal MS, Kellis M, Keller CA, Morrissey CS, Mishra T, Jain D, Dogan N, Harris RS, Cayting P, Kawli T, Boyle AP, Euskirchen G, Kundaje A, Lin S, Lin Y, Jansen C, Malladi VS, Cline MS, Erickson DT, Kirkup VM, Learned K, Sloan CA, Rosenbloom KR, Lacerda de Sousa B, Beal K, Pignatelli M, Flicek P, Lian J, Kahveci T, Lee D, Kent WJ, Ramalho Santos M, Herrero J, Notredame C, Johnson A, Vong S, Lee K, Bates D, Neri F, Diegel M, Canfield T, Sabo PJ, Wilken MS, Reh TA, Giste E, Shafer A, Kutyavin T, Haugen E, Dunn D, Reynolds AP, Neph S, Humbert R, Hansen RS, De Bruijn M, Selleri L, Rudensky A, Josefowicz S, Samstein R, Eichler EE, Orkin SH, Levasseur D, Papayannopoulou T, Chang KH, Skoultchi A, Gosh S, Disteche C, Treuting P, Wang Y, Weiss MJ, Blobel GA, Cao X, Zhong S, Wang T, Good PJ, Lowdon RF, Adams LB, Zhou XQ, Pazin MJ, Feingold EA, Wold B, Taylor J, Mortazavi A, Weissman SM, Stamatoyannopoulos JA, Snyder MP, Guigo R, Gingeras TR, Gilbert DM, Hardison RC, Beer MA, Ren B; Mouse ENCODE Consortium.

Nature. 2014 Nov 20;515(7527):355-64. doi: 10.1038/nature13992.

11.

Genome-scale mapping of DNase I hypersensitivity.

John S, Sabo PJ, Canfield TK, Lee K, Vong S, Weaver M, Wang H, Vierstra J, Reynolds AP, Thurman RE, Stamatoyannopoulos JA.

Curr Protoc Mol Biol. 2013 Jul;Chapter 27:Unit 21.27. doi: 10.1002/0471142727.mb2127s103.

12.

Widespread plasticity in CTCF occupancy linked to DNA methylation.

Wang H, Maurano MT, Qu H, Varley KE, Gertz J, Pauli F, Lee K, Canfield T, Weaver M, Sandstrom R, Thurman RE, Kaul R, Myers RM, Stamatoyannopoulos JA.

Genome Res. 2012 Sep;22(9):1680-8. doi: 10.1101/gr.136101.111.

13.

Systematic localization of common disease-associated variation in regulatory DNA.

Maurano MT, Humbert R, Rynes E, Thurman RE, Haugen E, Wang H, Reynolds AP, Sandstrom R, Qu H, Brody J, Shafer A, Neri F, Lee K, Kutyavin T, Stehling-Sun S, Johnson AK, Canfield TK, Giste E, Diegel M, Bates D, Hansen RS, Neph S, Sabo PJ, Heimfeld S, Raubitschek A, Ziegler S, Cotsapas C, Sotoodehnia N, Glass I, Sunyaev SR, Kaul R, Stamatoyannopoulos JA.

Science. 2012 Sep 7;337(6099):1190-5. doi: 10.1126/science.1222794. Epub 2012 Sep 5.

14.

An expansive human regulatory lexicon encoded in transcription factor footprints.

Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK, Maurano MT, Humbert R, Rynes E, Wang H, Vong S, Lee K, Bates D, Diegel M, Roach V, Dunn D, Neri J, Schafer A, Hansen RS, Kutyavin T, Giste E, Weaver M, Canfield T, Sabo P, Zhang M, Balasundaram G, Byron R, MacCoss MJ, Akey JM, Bender MA, Groudine M, Kaul R, Stamatoyannopoulos JA.

Nature. 2012 Sep 6;489(7414):83-90. doi: 10.1038/nature11212.

15.

The accessible chromatin landscape of the human genome.

Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, Garg K, John S, Sandstrom R, Bates D, Boatman L, Canfield TK, Diegel M, Dunn D, Ebersol AK, Frum T, Giste E, Johnson AK, Johnson EM, Kutyavin T, Lajoie B, Lee BK, Lee K, London D, Lotakis D, Neph S, Neri F, Nguyen ED, Qu H, Reynolds AP, Roach V, Safi A, Sanchez ME, Sanyal A, Shafer A, Simon JM, Song L, Vong S, Weaver M, Yan Y, Zhang Z, Zhang Z, Lenhard B, Tewari M, Dorschner MO, Hansen RS, Navas PA, Stamatoyannopoulos G, Iyer VR, Lieb JD, Sunyaev SR, Akey JM, Sabo PJ, Kaul R, Furey TS, Dekker J, Crawford GE, Stamatoyannopoulos JA.

Nature. 2012 Sep 6;489(7414):75-82. doi: 10.1038/nature11232.

16.

An encyclopedia of mouse DNA elements (Mouse ENCODE).

Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R, Canfield T, Giste E, Johnson A, Zhang M, Balasundaram G, Byron R, Roach V, Sabo PJ, Sandstrom R, Stehling AS, Thurman RE, Weissman SM, Cayting P, Hariharan M, Lian J, Cheng Y, Landt SG, Ma Z, Wold BJ, Dekker J, Crawford GE, Keller CA, Wu W, Morrissey C, Kumar SA, Mishra T, Jain D, Byrska-Bishop M, Blankenberg D, Lajoie BR, Jain G, Sanyal A, Chen KB, Denas O, Taylor J, Blobel GA, Weiss MJ, Pimkin M, Deng W, Marinov GK, Williams BA, Fisher-Aylor KI, Desalvo G, Kiralusha A, Trout D, Amrhein H, Mortazavi A, Edsall L, McCleary D, Kuan S, Shen Y, Yue F, Ye Z, Davis CA, Zaleski C, Jha S, Xue C, Dobin A, Lin W, Fastuca M, Wang H, Guigo R, Djebali S, Lagarde J, Ryba T, Sasaki T, Malladi VS, Cline MS, Kirkup VM, Learned K, Rosenbloom KR, Kent WJ, Feingold EA, Good PJ, Pazin M, Lowdon RF, Adams LB.

Genome Biol. 2012 Aug 13;13(8):418. doi: 10.1186/gb-2012-13-8-418.

17.

Dynamic reprogramming of chromatin accessibility during Drosophila embryo development.

Thomas S, Li XY, Sabo PJ, Sandstrom R, Thurman RE, Canfield TK, Giste E, Fisher W, Hammonds A, Celniker SE, Biggin MD, Stamatoyannopoulos JA.

Genome Biol. 2011;12(5):R43. doi: 10.1186/gb-2011-12-5-r43. Epub 2011 May 11.

18.

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ.

Nature. 2011 Mar 24;471(7339):480-5. doi: 10.1038/nature09725. Epub 2010 Dec 22.

19.

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing.

Hansen RS, Thomas S, Sandstrom R, Canfield TK, Thurman RE, Weaver M, Dorschner MO, Gartler SM, Stamatoyannopoulos JA.

Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):139-44. doi: 10.1073/pnas.0912402107. Epub 2009 Dec 4.

20.

Meta-analysis of nitrogen removal in riparian buffers.

Mayer PM, Reynolds SK Jr, McCutchen MD, Canfield TJ.

J Environ Qual. 2007 Jun 27;36(4):1172-80. Print 2007 Jul-Aug.

PMID:
17596626
21.

Abnormal X: autosome ratio, but normal X chromosome inactivation in human triploid cultures.

Gartler SM, Varadarajan KR, Luo P, Norwood TH, Canfield TK, Hansen RS.

BMC Genet. 2006 Jul 3;7:41.

22.

Assessing contaminant sensitivity of endangered and threatened aquatic species: part III. Effluent toxicity tests.

Dwyer FJ, Hardesty DK, Henke CE, Ingersoll CG, Whites DW, Augspurger T, Canfield TJ, Mount DR, Mayer FL.

Arch Environ Contam Toxicol. 2005 Feb;48(2):174-83. Epub 2005 Feb 15.

PMID:
15750777
23.

Normal histone modifications on the inactive X chromosome in ICF and Rett syndrome cells: implications for methyl-CpG binding proteins.

Gartler SM, Varadarajan KR, Luo P, Canfield TK, Traynor J, Francke U, Hansen RS.

BMC Biol. 2004 Sep 20;2:21.

24.

Mechanical determinants of graft kinking.

Dobrin PB, Hodgett D, Canfield T, Mrkvicka R.

Ann Vasc Surg. 2001 May;15(3):343-9.

PMID:
11414086
25.

Escape from gene silencing in ICF syndrome: evidence for advanced replication time as a major determinant.

Hansen RS, Stöger R, Wijmenga C, Stanek AM, Canfield TK, Luo P, Matarazzo MR, D'Esposito M, Feil R, Gimelli G, Weemaes CM, Laird CD, Gartler SM.

Hum Mol Genet. 2000 Nov 1;9(18):2575-87.

PMID:
11063717
26.

The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndrome.

Hansen RS, Wijmenga C, Luo P, Stanek AM, Canfield TK, Weemaes CM, Gartler SM.

Proc Natl Acad Sci U S A. 1999 Dec 7;96(25):14412-7.

27.

Assessing Sediments from Upper Mississippi River Navigational Pools Using a Benthic Invertebrate Community Evaluation and the Sediment Quality Triad Approach

Canfield TJ, Brunson EL, Dwyer FJ, Ingersoll CG, Kemble NE.

Arch Environ Contam Toxicol. 1998 Aug;35(2):202-12.

PMID:
9680512
28.

Assessing the Bioaccumulation of Contaminants from Sediments of the Upper Mississippi River Using Field-Collected Oligochaetes and Laboratory-Exposed Lumbriculus variegatus

Brunson EL, Canfield TJ, Dwyer FJ, Ingersoll CG, Kemble NE.

Arch Environ Contam Toxicol. 1998 Aug;35(2):191-201.

PMID:
9680511
29.

Assessing Sediment Toxicity from Navigational Pools of the Upper Mississippi River Using a 28-Day Hyalella azteca Test

Kemble NE, Brunson EL, Canfield TJ, Dwyer FJ, Ingersoll CG.

Arch Environ Contam Toxicol. 1998 Aug;35(2):181-90.

PMID:
9680510
30.

Reactivation of XIST in normal fibroblasts and a somatic cell hybrid: abnormal localization of XIST RNA in hybrid cells.

Hansen RS, Canfield TK, Stanek AM, Keitges EA, Gartler SM.

Proc Natl Acad Sci U S A. 1998 Apr 28;95(9):5133-8.

31.

A variable domain of delayed replication in FRAXA fragile X chromosomes: X inactivation-like spread of late replication.

Hansen RS, Canfield TK, Fjeld AD, Mumm S, Laird CD, Gartler SM.

Proc Natl Acad Sci U S A. 1997 Apr 29;94(9):4587-92.

32.

Role of late replication timing in the silencing of X-linked genes.

Hansen RS, Canfield TK, Fjeld AD, Gartler SM.

Hum Mol Genet. 1996 Sep;5(9):1345-53.

PMID:
8872476
33.

Reverse replication timing for the XIST gene in human fibroblasts.

Hansen RS, Canfield TK, Gartler SM.

Hum Mol Genet. 1995 May;4(5):813-20.

PMID:
7633440
34.

Association of fragile X syndrome with delayed replication of the FMR1 gene.

Hansen RS, Canfield TK, Lamb MM, Gartler SM, Laird CD.

Cell. 1993 Jul 2;73(7):1403-9.

PMID:
8324827
35.

Chromosomal fragile sites: molecular test of the delayed-replication model.

Laird CD, Hansen RS, Canfield TK, Lamb MM, Gartler SM.

Cold Spring Harb Symp Quant Biol. 1993;58:633-5. No abstract available.

PMID:
7956079
36.

The clinical problem of occult cardiac amyloidosis. Forensic implications.

Petersen EC, Engel JA, Radio SJ, Canfield TM, McManus BM.

Am J Forensic Med Pathol. 1992 Sep;13(3):225-9.

PMID:
1476128
37.
38.

Elastase, collagenase, and the biaxial elastic properties of dog carotid artery.

Dobrin PB, Canfield TR.

Am J Physiol. 1984 Jul;247(1 Pt 2):H124-31.

PMID:
6331204
39.

Chromatin structure of active and inactive human X chromosomes.

Riley DE, Canfield TK, Gartler SM.

Nucleic Acids Res. 1984 Feb 24;12(4):1829-45.

40.

An outbreak of amebiasis spread by colonic irrigation at a chiropractic clinic.

Istre GR, Kreiss K, Hopkins RS, Healy GR, Benziger M, Canfield TM, Dickinson P, Englert TR, Compton RC, Mathews HM, Simmons RA.

N Engl J Med. 1982 Aug 5;307(6):339-42.

PMID:
6283354
41.

Patterns of protein synthesis at the onset of oogenesis in the mouse.

Cole RE, Canfield TK, Gartler SM.

Differentiation. 1982;22(2):85-9.

PMID:
6897050
42.

Plague in a neonate.

White ME, Rosenbaum RJ, Canfield TM, Poland JD.

Am J Dis Child. 1981 May;135(5):418-9.

PMID:
7234765
43.

Blood banking in the small hospital.

Benziger M, Benziger J, Canfield TM.

Surg Clin North Am. 1979 Jun;59(3):471-82.

PMID:
451798
44.

Coronary artery bypass. The physiological basis for differences in flow with internal mammary artery and saphenous vein grafts.

Dobrin P, Canfield T, Moran J, Sullivan H, Pifarré R.

J Thorac Cardiovasc Surg. 1977 Sep;74(3):445-54. No abstract available.

PMID:
302374
45.

Cuffed endotracheal tubes: mucosal pressures and tracheal wall blood flow.

Dobrin P, Canfield T.

Am J Surg. 1977 May;133(5):562-8.

PMID:
860779
46.

Identification of smooth muscle series elastic component in intact carotid artery.

Dobrin P, Canfield T.

Am J Physiol. 1977 Feb;232(2):H122-30.

PMID:
190898
47.

Drug addiction of health professionals.

Canfield TM.

AORN J. 1976 Oct;24(4):665-71. No abstract available.

PMID:
1049523
48.

Development of longitudinal retraction of carotid arteries in neonatal dogs.

Dobrin P, Canfield T, Sinha S.

Experientia. 1975 Nov 15;31(11):1295-6.

PMID:
1204778
49.

The endotracheal cuff: a comparative study.

Dobrin PB, Goldberg EM, Canfield TR.

Anesth Analg. 1974 May-Jun;53(3):456-60. No abstract available.

PMID:
4856940
50.

Series elastic and contractile elements in vascular smooth muscle.

Dobrin PB, Canfield TR.

Circ Res. 1973 Oct;33(4):454-64. No abstract available.

PMID:
4741944

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