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Items: 41

1.

Towards Exploring Toxin-Antitoxin Systems in Geobacillus: A Screen for Type II Toxin-Antitoxin System Families in a Thermophilic Genus.

Alkhalili RN, Wallenius J, Canbäck B.

Int J Mol Sci. 2019 Nov 22;20(23). pii: E5869. doi: 10.3390/ijms20235869.

3.

Contrasting prevalence of selection and drift in the community structuring of bacteria and microbial eukaryotes.

Logares R, Tesson SVM, Canbäck B, Pontarp M, Hedlund K, Rengefors K.

Environ Microbiol. 2018 Jun;20(6):2231-2240. doi: 10.1111/1462-2920.14265. Epub 2018 Jul 2.

PMID:
29727053
4.

Antimicrobial Protein Candidates from the Thermophilic Geobacillus sp. Strain ZGt-1: Production, Proteomics, and Bioinformatics Analysis.

Alkhalili RN, Bernfur K, Dishisha T, Mamo G, Schelin J, Canbäck B, Emanuelsson C, Hatti-Kaul R.

Int J Mol Sci. 2016 Aug 19;17(8). pii: E1363. doi: 10.3390/ijms17081363.

5.

The Genome of Haemoproteus tartakovskyi and Its Relationship to Human Malaria Parasites.

Bensch S, Canbäck B, DeBarry JD, Johansson T, Hellgren O, Kissinger JC, Palinauskas V, Videvall E, Valkiūnas G.

Genome Biol Evol. 2016 May 12;8(5):1361-73. doi: 10.1093/gbe/evw081.

6.

Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors.

Shah F, Nicolás C, Bentzer J, Ellström M, Smits M, Rineau F, Canbäck B, Floudas D, Carleer R, Lackner G, Braesel J, Hoffmeister D, Henrissat B, Ahrén D, Johansson T, Hibbett DS, Martin F, Persson P, Tunlid A.

New Phytol. 2016 Mar;209(4):1705-19. doi: 10.1111/nph.13722. Epub 2015 Nov 3.

7.

Genome Sequence of Geobacillus sp. Strain ZGt-1, an Antibacterial Peptide-Producing Bacterium from Hot Springs in Jordan.

Alkhalili RN, Hatti-Kaul R, Canbäck B.

Genome Announc. 2015 Jul 23;3(4). pii: e00799-15. doi: 10.1128/genomeA.00799-15.

8.

Evidence for Positive Selection within the PgiC1 Locus in the Grass Festuca ovina.

Li Y, Canbäck B, Johansson T, Tunlid A, Prentice HC.

PLoS One. 2015 May 6;10(5):e0125831. doi: 10.1371/journal.pone.0125831. eCollection 2015.

9.

Bacterial community analysis of drinking water biofilms in southern Sweden.

Lührig K, Canbäck B, Paul CJ, Johansson T, Persson KM, Rådström P.

Microbes Environ. 2015;30(1):99-107. doi: 10.1264/jsme2.ME14123. Epub 2015 Feb 21.

10.

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.

Kohler A, Kuo A, Nagy LG, Morin E, Barry KW, Buscot F, Canbäck B, Choi C, Cichocki N, Clum A, Colpaert J, Copeland A, Costa MD, Doré J, Floudas D, Gay G, Girlanda M, Henrissat B, Herrmann S, Hess J, Högberg N, Johansson T, Khouja HR, LaButti K, Lahrmann U, Levasseur A, Lindquist EA, Lipzen A, Marmeisse R, Martino E, Murat C, Ngan CY, Nehls U, Plett JM, Pringle A, Ohm RA, Perotto S, Peter M, Riley R, Rineau F, Ruytinx J, Salamov A, Shah F, Sun H, Tarkka M, Tritt A, Veneault-Fourrey C, Zuccaro A; Mycorrhizal Genomics Initiative Consortium, Tunlid A, Grigoriev IV, Hibbett DS, Martin F.

Nat Genet. 2015 Apr;47(4):410-5. doi: 10.1038/ng.3223. Epub 2015 Feb 23.

11.

Species and gene divergence in Littorina snails detected by array comparative genomic hybridization.

Panova M, Johansson T, Canbäck B, Bentzer J, Rosenblad MA, Johannesson K, Tunlid A, André C.

BMC Genomics. 2014 Aug 18;15:687. doi: 10.1186/1471-2164-15-687.

12.

The molecular components of the extracellular protein-degradation pathways of the ectomycorrhizal fungus Paxillus involutus.

Shah F, Rineau F, Canbäck B, Johansson T, Tunlid A.

New Phytol. 2013 Nov;200(3):875-87. doi: 10.1111/nph.12425. Epub 2013 Jul 31.

13.

Characterisation of a transcriptome to find sequence differences between two differentially migrating subspecies of the willow warbler Phylloscopus trochilus.

Lundberg M, Boss J, Canbäck B, Liedvogel M, Larson KW, Grahn M, Åkesson S, Bensch S, Wright A.

BMC Genomics. 2013 May 14;14:330. doi: 10.1186/1471-2164-14-330.

14.

Major histocompatibility complex class II compatibility, but not class I, predicts mate choice in a bird with highly developed olfaction.

Strandh M, Westerdahl H, Pontarp M, Canbäck B, Dubois MP, Miquel C, Taberlet P, Bonadonna F.

Proc Biol Sci. 2012 Nov 7;279(1746):4457-63. Epub 2012 Sep 5.

15.

Large-scale candidate gene scan reveals the role of chemoreceptor genes in host plant specialization and speciation in the pea aphid.

Smadja CM, Canbäck B, Vitalis R, Gautier M, Ferrari J, Zhou JJ, Butlin RK.

Evolution. 2012 Sep;66(9):2723-38. doi: 10.1111/j.1558-5646.2012.01612.x. Epub 2012 Apr 12.

PMID:
22946799
16.

The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown-rot mechanism involving Fenton chemistry.

Rineau F, Roth D, Shah F, Smits M, Johansson T, Canbäck B, Olsen PB, Persson P, Grell MN, Lindquist E, Grigoriev IV, Lange L, Tunlid A.

Environ Microbiol. 2012 Jun;14(6):1477-87. doi: 10.1111/j.1462-2920.2012.02736.x. Epub 2012 Mar 30.

17.

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.

Olson A, Aerts A, Asiegbu F, Belbahri L, Bouzid O, Broberg A, Canbäck B, Coutinho PM, Cullen D, Dalman K, Deflorio G, van Diepen LT, Dunand C, Duplessis S, Durling M, Gonthier P, Grimwood J, Fossdal CG, Hansson D, Henrissat B, Hietala A, Himmelstrand K, Hoffmeister D, Högberg N, James TY, Karlsson M, Kohler A, Kües U, Lee YH, Lin YC, Lind M, Lindquist E, Lombard V, Lucas S, Lundén K, Morin E, Murat C, Park J, Raffaello T, Rouzé P, Salamov A, Schmutz J, Solheim H, Ståhlberg J, Vélëz H, de Vries RP, Wiebenga A, Woodward S, Yakovlev I, Garbelotto M, Martin F, Grigoriev IV, Stenlid J.

New Phytol. 2012 Jun;194(4):1001-13. doi: 10.1111/j.1469-8137.2012.04128.x. Epub 2012 Mar 28.

18.

Phylogenetic analysis suggests that habitat filtering is structuring marine bacterial communities across the globe.

Pontarp M, Canbäck B, Tunlid A, Lundberg P.

Microb Ecol. 2012 Jul;64(1):8-17. doi: 10.1007/s00248-011-0005-7.

19.

Recruitment of members from the rare biosphere of marine bacterioplankton communities after an environmental disturbance.

Sjöstedt J, Koch-Schmidt P, Pontarp M, Canbäck B, Tunlid A, Lundberg P, Hagström A, Riemann L.

Appl Environ Microbiol. 2012 Mar;78(5):1361-9. doi: 10.1128/AEM.05542-11. Epub 2011 Dec 22.

20.

The Littorina sequence database (LSD)--an online resource for genomic data.

Canbäck B, André C, Galindo J, Johannesson K, Johansson T, Panova M, Tunlid A, Butlin R.

Mol Ecol Resour. 2012 Jan;12(1):142-8. doi: 10.1111/j.1755-0998.2011.03042.x. Epub 2011 Jun 28.

PMID:
21707958
21.

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).

Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M, Burns C, Canbäck B, Casselton LA, Cheng CK, Deng J, Dietrich FS, Fargo DC, Farman ML, Gathman AC, Goldberg J, Guigó R, Hoegger PJ, Hooker JB, Huggins A, James TY, Kamada T, Kilaru S, Kodira C, Kües U, Kupfer D, Kwan HS, Lomsadze A, Li W, Lilly WW, Ma LJ, Mackey AJ, Manning G, Martin F, Muraguchi H, Natvig DO, Palmerini H, Ramesh MA, Rehmeyer CJ, Roe BA, Shenoy N, Stanke M, Ter-Hovhannisyan V, Tunlid A, Velagapudi R, Vision TJ, Zeng Q, Zolan ME, Pukkila PJ.

Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11889-94. doi: 10.1073/pnas.1003391107. Epub 2010 Jun 14.

22.

Diversity of bacteria associated with grassland soil nematodes of different feeding groups.

Ladygina N, Johansson T, Canbäck B, Tunlid A, Hedlund K.

FEMS Microbiol Ecol. 2009 Jul;69(1):53-61. doi: 10.1111/j.1574-6941.2009.00687.x. Epub 2009 Apr 30.

23.

RAMI: a tool for identification and characterization of phylogenetic clusters in microbial communities.

Pommier T, Canbäck B, Lundberg P, Hagström A, Tunlid A.

Bioinformatics. 2009 Mar 15;25(6):736-42. doi: 10.1093/bioinformatics/btp051. Epub 2009 Feb 17.

24.

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis.

Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, Duchaussoy F, Gibon J, Kohler A, Lindquist E, Pereda V, Salamov A, Shapiro HJ, Wuyts J, Blaudez D, Buée M, Brokstein P, Canbäck B, Cohen D, Courty PE, Coutinho PM, Delaruelle C, Detter JC, Deveau A, DiFazio S, Duplessis S, Fraissinet-Tachet L, Lucic E, Frey-Klett P, Fourrey C, Feussner I, Gay G, Grimwood J, Hoegger PJ, Jain P, Kilaru S, Labbé J, Lin YC, Legué V, Le Tacon F, Marmeisse R, Melayah D, Montanini B, Muratet M, Nehls U, Niculita-Hirzel H, Oudot-Le Secq MP, Peter M, Quesneville H, Rajashekar B, Reich M, Rouhier N, Schmutz J, Yin T, Chalot M, Henrissat B, Kües U, Lucas S, Van de Peer Y, Podila GK, Polle A, Pukkila PJ, Richardson PM, Rouzé P, Sanders IR, Stajich JE, Tunlid A, Tuskan G, Grigoriev IV.

Nature. 2008 Mar 6;452(7183):88-92. doi: 10.1038/nature06556.

PMID:
18322534
25.

ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences.

Laslett D, Canbäck B.

Bioinformatics. 2008 Jan 15;24(2):172-5. Epub 2007 Nov 22.

PMID:
18033792
26.

The origins of modern proteomes.

Kurland CG, Canbäck B, Berg OG.

Biochimie. 2007 Dec;89(12):1454-63. Epub 2007 Sep 15.

PMID:
17949885
27.

Global patterns of diversity and community structure in marine bacterioplankton.

Pommier T, Canbäck B, Riemann L, Boström KH, Simu K, Lundberg P, Tunlid A, Hagström A.

Mol Ecol. 2007 Feb;16(4):867-80.

PMID:
17284217
28.

Selective foraging of fungi by collembolans in soil.

Jørgensen HB, Johansson T, Canbäck B, Hedlund K, Tunlid A.

Biol Lett. 2005 Jun 22;1(2):243-6.

29.

Screening for rapidly evolving genes in the ectomycorrhizal fungus Paxillus involutus using cDNA microarrays.

Le Quéré A, Eriksen KA, Rajashekar B, Schützendübel A, Canbäck B, Johansson T, Tunlid A.

Mol Ecol. 2006 Feb;15(2):535-50.

PMID:
16448419
30.

Down-regulation of the strawberry Bet v 1-homologous allergen in concert with the flavonoid biosynthesis pathway in colorless strawberry mutant.

Hjernø K, Alm R, Canbäck B, Matthiesen R, Trajkovski K, Björk L, Roepstorff P, Emanuelsson C.

Proteomics. 2006 Mar;6(5):1574-87.

PMID:
16447153
31.

Divergence in gene expression related to variation in host specificity of an ectomycorrhizal fungus.

Le Quéré A, Schützendübel A, Rajashekar B, Canbäck B, Hedh J, Erland S, Johansson T, Tunlid A.

Mol Ecol. 2004 Dec;13(12):3809-19.

PMID:
15548293
32.

The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae.

Alsmark CM, Frank AC, Karlberg EO, Legault BA, Ardell DH, Canbäck B, Eriksson AS, Näslund AK, Handley SA, Huvet M, La Scola B, Holmberg M, Andersson SG.

Proc Natl Acad Sci U S A. 2004 Jun 29;101(26):9716-21. Epub 2004 Jun 21.

33.

A phylogenomic study of endosymbiotic bacteria.

Canbäck B, Tamas I, Andersson SG.

Mol Biol Evol. 2004 Jun;21(6):1110-22. Epub 2004 Mar 10.

PMID:
15014155
34.

ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Laslett D, Canback B.

Nucleic Acids Res. 2004 Jan 2;32(1):11-6. Print 2004.

35.

Horizontal gene transfer: a critical view.

Kurland CG, Canback B, Berg OG.

Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9658-62. Epub 2003 Aug 5. Review.

36.

On the origin of mitochondria: a genomics perspective.

Andersson SG, Karlberg O, Canbäck B, Kurland CG.

Philos Trans R Soc Lond B Biol Sci. 2003 Jan 29;358(1429):165-77; discussion 177-9. Review.

37.

Comparative genomics of microbial pathogens and symbionts.

Andersson SG, Alsmark C, Canbäck B, Davids W, Frank C, Karlberg O, Klasson L, Antoine-Legault B, Mira A, Tamas I.

Bioinformatics. 2002;18 Suppl 2:S17.

PMID:
12385978
38.

BRUCE: a program for the detection of transfer-messenger RNA genes in nucleotide sequences.

Laslett D, Canback B, Andersson S.

Nucleic Acids Res. 2002 Aug 1;30(15):3449-53.

39.

50 million years of genomic stasis in endosymbiotic bacteria.

Tamas I, Klasson L, Canbäck B, Näslund AK, Eriksson AS, Wernegreen JJ, Sandström JP, Moran NA, Andersson SG.

Science. 2002 Jun 28;296(5577):2376-9.

40.

The global phylogeny of glycolytic enzymes.

Canback B, Andersson SG, Kurland CG.

Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):6097-102.

41.

The dual origin of the yeast mitochondrial proteome.

Karlberg O, Canbäck B, Kurland CG, Andersson SG.

Yeast. 2000 Sep 30;17(3):170-87.

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