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Items: 1 to 50 of 52

1.

Recent advances in glycoinformatic platforms for glycomics and glycoproteomics.

Abrahams JL, Taherzadeh G, Jarvas G, Guttman A, Zhou Y, Campbell MP.

Curr Opin Struct Biol. 2019 Dec 20;62:56-69. doi: 10.1016/j.sbi.2019.11.009. [Epub ahead of print] Review.

PMID:
31874386
2.

Expanding the capillary electrophoresis based glucose unit database of the GUcal app.

Jarvas G, Szigeti M, Campbell MP, Guttman A.

Glycobiology. 2019 Dec 12. pii: cwz102. doi: 10.1093/glycob/cwz102. [Epub ahead of print]

PMID:
31829415
3.

GlyGen: Computational and Informatics Resources for Glycoscience.

York WS, Mazumder R, Ranzinger R, Edwards N, Kahsay R, Aoki-Kinoshita KF, Campbell MP, Cummings RD, Feizi T, Martin M, Natale DA, Packer NH, Woods RJ, Agarwal G, Arpinar S, Bhat S, Blake J, Castro LJG, Fochtman B, Gildersleeve J, Goldman R, Holmes X, Jain V, Kulkarni S, Mahadik R, Mehta A, Mousavi R, Nakarakommula S, Navelkar R, Pattabiraman N, Pierce MJ, Ross K, Vasudev P, Vora J, Williamson T, Zhang W.

Glycobiology. 2020 Jan 28;30(2):72-73. doi: 10.1093/glycob/cwz080. No abstract available.

PMID:
31616925
4.

Effects of Perioperative Nonsteroidal Anti-inflammatory Drug Administration on Soft Tissue Healing: A Systematic Review of Clinical Outcomes After Sports Medicine Orthopaedic Surgery Procedures.

Constantinescu DS, Campbell MP, Moatshe G, Vap AR.

Orthop J Sports Med. 2019 Apr 16;7(4):2325967119838873. doi: 10.1177/2325967119838873. eCollection 2019 Apr. Review.

5.

SPRINT-Gly: predicting N- and O-linked glycosylation sites of human and mouse proteins by using sequence and predicted structural properties.

Taherzadeh G, Dehzangi A, Golchin M, Zhou Y, Campbell MP.

Bioinformatics. 2019 Oct 15;35(20):4140-4146. doi: 10.1093/bioinformatics/btz215.

PMID:
30903686
6.

The minimum information required for a glycomics experiment (MIRAGE) project: LC guidelines.

Campbell MP, Abrahams JL, Rapp E, Struwe WB, Costello CE, Novotny M, Ranzinger R, York WS, Kolarich D, Rudd PM, Kettner C.

Glycobiology. 2019 May 1;29(5):349-354. doi: 10.1093/glycob/cwz009.

PMID:
30778580
7.

GlycoStore: a database of retention properties for glycan analysis.

Zhao S, Walsh I, Abrahams JL, Royle L, Nguyen-Khuong T, Spencer D, Fernandes DL, Packer NH, Rudd PM, Campbell MP.

Bioinformatics. 2018 Sep 15;34(18):3231-3232. doi: 10.1093/bioinformatics/bty319.

PMID:
29897488
8.

GlyTouCan: an accessible glycan structure repository.

Tiemeyer M, Aoki K, Paulson J, Cummings RD, York WS, Karlsson NG, Lisacek F, Packer NH, Campbell MP, Aoki NP, Fujita A, Matsubara M, Shinmachi D, Tsuchiya S, Yamada I, Pierce M, Ranzinger R, Narimatsu H, Aoki-Kinoshita KF.

Glycobiology. 2017 Oct 1;27(10):915-919. doi: 10.1093/glycob/cwx066.

9.

Building a PGC-LC-MS N-glycan retention library and elution mapping resource.

Abrahams JL, Campbell MP, Packer NH.

Glycoconj J. 2018 Feb;35(1):15-29. doi: 10.1007/s10719-017-9793-4. Epub 2017 Sep 13.

PMID:
28905148
10.

Glycoinformatics.

Campbell MP, Aoki-Kinoshita KF, Lisacek F, York WS, Packer NH.

In: Varki A, Cummings RD, Esko JD, Stanley P, Hart GW, Aebi M, Darvill AG, Kinoshita T, Packer NH, Prestegard JH, Schnaar RL, Seeberger PH, editors. Essentials of Glycobiology [Internet]. 3rd edition. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press; 2015-2017. Chapter 52.
2017.

11.

Injection and controlled motion of conducting domain walls in improper ferroelectric Cu-Cl boracite.

McQuaid RGP, Campbell MP, Whatmore RW, Kumar A, Gregg JM.

Nat Commun. 2017 May 16;8:15105. doi: 10.1038/ncomms15105.

12.

Navigating the Glycome Space and Connecting the Glycoproteome.

Campbell MP, Peterson RA, Gasteiger E, Mariethoz J, Lisacek F, Packer NH.

Methods Mol Biol. 2017;1558:139-158. doi: 10.1007/978-1-4939-6783-4_7.

PMID:
28150237
13.

The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data.

Liu Y, McBride R, Stoll M, Palma AS, Silva L, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Novotny MV, Packer NH, Ranzinger R, Rapp E, Rudd PM, Struwe WB, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C, Paulson JC, Feizi T, Smith DF.

Glycobiology. 2017 Apr;27(4):280-284. Epub 2016 Nov 22.

14.

Hall effect in charged conducting ferroelectric domain walls.

Campbell MP, McConville JP, McQuaid RG, Prabhakaran D, Kumar A, Gregg JM.

Nat Commun. 2016 Dec 12;7:13764. doi: 10.1038/ncomms13764.

15.

Databases and Associated Tools for Glycomics and Glycoproteomics.

Lisacek F, Mariethoz J, Alocci D, Rudd PM, Abrahams JL, Campbell MP, Packer NH, Ståhle J, Widmalm G, Mullen E, Adamczyk B, Rojas-Macias MA, Jin C, Karlsson NG.

Methods Mol Biol. 2017;1503:235-264.

PMID:
27743371
16.

The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets.

Struwe WB, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Ten Feizi, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Liu Y, McBride R, Novotny MV, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C.

Glycobiology. 2016 Sep;26(9):907-910. Epub 2016 Sep 21.

17.

Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure database.

Akune Y, Lin CH, Abrahams JL, Zhang J, Packer NH, Aoki-Kinoshita KF, Campbell MP.

Carbohydr Res. 2016 Aug 5;431:56-63. doi: 10.1016/j.carres.2016.05.012. Epub 2016 May 30.

PMID:
27318307
18.

UniCarbKB: New database features for integrating glycan structure abundance, compositional glycoproteomics data, and disease associations.

Campbell MP, Packer NH.

Biochim Biophys Acta. 2016 Aug;1860(8):1669-75. doi: 10.1016/j.bbagen.2016.02.016. Epub 2016 Mar 3.

PMID:
26940363
19.

Property Graph vs RDF Triple Store: A Comparison on Glycan Substructure Search.

Alocci D, Mariethoz J, Horlacher O, Bolleman JT, Campbell MP, Lisacek F.

PLoS One. 2015 Dec 14;10(12):e0144578. doi: 10.1371/journal.pone.0144578. eCollection 2015.

20.

SugarBindDB, a resource of glycan-mediated host-pathogen interactions.

Mariethoz J, Khatib K, Alocci D, Campbell MP, Karlsson NG, Packer NH, Mullen EH, Lisacek F.

Nucleic Acids Res. 2016 Jan 4;44(D1):D1243-50. doi: 10.1093/nar/gkv1247. Epub 2015 Nov 17.

21.

GlycoMob: an ion mobility-mass spectrometry collision cross section database for glycomics.

Struwe WB, Pagel K, Benesch JL, Harvey DJ, Campbell MP.

Glycoconj J. 2016 Jun;33(3):399-404. doi: 10.1007/s10719-015-9613-7. Epub 2015 Aug 28.

PMID:
26314736
22.

Relative quantitation of multi-antennary N-glycan classes: combining PGC-LC-ESI-MS with exoglycosidase digestion.

Abrahams JL, Packer NH, Campbell MP.

Analyst. 2015 Aug 21;140(16):5444-9. doi: 10.1039/c5an00691k.

PMID:
26133503
23.

GlycoBase and autoGU: resources for interpreting HPLC-glycan data.

Campbell MP, Royle L, Rudd PM.

Methods Mol Biol. 2015;1273:17-28. doi: 10.1007/978-1-4939-2343-4_2.

PMID:
25753700
24.

GlycoRDF: an ontology to standardize glycomics data in RDF.

Ranzinger R, Aoki-Kinoshita KF, Campbell MP, Kawano S, Lütteke T, Okuda S, Shinmachi D, Shikanai T, Sawaki H, Toukach P, Matsubara M, Yamada I, Narimatsu H.

Bioinformatics. 2015 Mar 15;31(6):919-25. doi: 10.1093/bioinformatics/btu732. Epub 2014 Nov 11.

25.

GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determination.

Gotz L, Abrahams JL, Mariethoz J, Rudd PM, Karlsson NG, Packer NH, Campbell MP, Lisacek F.

Bioinformatics. 2014 Nov 1;30(21):3131-3. doi: 10.1093/bioinformatics/btu425. Epub 2014 Jul 10.

26.

The impact of anti-apoptotic gene Bcl-2∆ expression on CHO central metabolism.

Templeton N, Lewis A, Dorai H, Qian EA, Campbell MP, Smith KD, Lang SE, Betenbaugh MJ, Young JD.

Metab Eng. 2014 Sep;25:92-102. doi: 10.1016/j.ymben.2014.06.010. Epub 2014 Jul 8.

PMID:
25014175
27.

MIRAGE: the minimum information required for a glycomics experiment.

York WS, Agravat S, Aoki-Kinoshita KF, McBride R, Campbell MP, Costello CE, Dell A, Feizi T, Haslam SM, Karlsson N, Khoo KH, Kolarich D, Liu Y, Novotny M, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Struwe WB, Tiemeyer M, Wells L, Zaia J, Kettner C.

Glycobiology. 2014 May;24(5):402-6. doi: 10.1093/glycob/cwu018. Epub 2014 Mar 20.

28.

Toolboxes for a standardised and systematic study of glycans.

Campbell MP, Ranzinger R, Lütteke T, Mariethoz J, Hayes CA, Zhang J, Akune Y, Aoki-Kinoshita KF, Damerell D, Carta G, York WS, Haslam SM, Narimatsu H, Rudd PM, Karlsson NG, Packer NH, Lisacek F.

BMC Bioinformatics. 2014;15 Suppl 1:S9. doi: 10.1186/1471-2105-15-S1-S9. Epub 2014 Jan 10.

29.

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

Katayama T, Wilkinson MD, Aoki-Kinoshita KF, Kawashima S, Yamamoto Y, Yamaguchi A, Okamoto S, Kawano S, Kim JD, Wang Y, Wu H, Kano Y, Ono H, Bono H, Kocbek S, Aerts J, Akune Y, Antezana E, Arakawa K, Aranda B, Baran J, Bolleman J, Bonnal RJ, Buttigieg PL, Campbell MP, Chen YA, Chiba H, Cock PJ, Cohen KB, Constantin A, Duck G, Dumontier M, Fujisawa T, Fujiwara T, Goto N, Hoehndorf R, Igarashi Y, Itaya H, Ito M, Iwasaki W, Kalaš M, Katoda T, Kim T, Kokubu A, Komiyama Y, Kotera M, Laibe C, Lapp H, Lütteke T, Marshall MS, Mori T, Mori H, Morita M, Murakami K, Nakao M, Narimatsu H, Nishide H, Nishimura Y, Nystrom-Persson J, Ogishima S, Okamura Y, Okuda S, Oshita K, Packer NH, Prins P, Ranzinger R, Rocca-Serra P, Sansone S, Sawaki H, Shin SH, Splendiani A, Strozzi F, Tadaka S, Toukach P, Uchiyama I, Umezaki M, Vos R, Whetzel PL, Yamada I, Yamasaki C, Yamashita R, York WS, Zmasek CM, Kawamoto S, Takagi T.

J Biomed Semantics. 2014 Feb 5;5(1):5. doi: 10.1186/2041-1480-5-5.

30.

Introducing glycomics data into the Semantic Web.

Aoki-Kinoshita KF, Bolleman J, Campbell MP, Kawano S, Kim JD, Lütteke T, Matsubara M, Okuda S, Ranzinger R, Sawaki H, Shikanai T, Shinmachi D, Suzuki Y, Toukach P, Yamada I, Packer NH, Narimatsu H.

J Biomed Semantics. 2013 Nov 26;4(1):39. doi: 10.1186/2041-1480-4-39.

31.

UniCarbKB: building a knowledge platform for glycoproteomics.

Campbell MP, Peterson R, Mariethoz J, Gasteiger E, Akune Y, Aoki-Kinoshita KF, Lisacek F, Packer NH.

Nucleic Acids Res. 2014 Jan;42(Database issue):D215-21. doi: 10.1093/nar/gkt1128. Epub 2013 Nov 13.

32.

Glycosylation status of serum in inflammatory arthritis in response to anti-TNF treatment.

Collins ES, Galligan MC, Saldova R, Adamczyk B, Abrahams JL, Campbell MP, Ng CT, Veale DJ, Murphy TB, Rudd PM, Fitzgerald O.

Rheumatology (Oxford). 2013 Sep;52(9):1572-82. doi: 10.1093/rheumatology/ket189. Epub 2013 May 16.

PMID:
23681398
33.

Greedy feature selection for glycan chromatography data with the generalized Dirichlet distribution.

Galligan MC, Saldova R, Campbell MP, Rudd PM, Murphy TB.

BMC Bioinformatics. 2013 May 7;14:155. doi: 10.1186/1471-2105-14-155.

34.

Validation of the curation pipeline of UniCarb-DB: building a global glycan reference MS/MS repository.

Campbell MP, Nguyen-Khuong T, Hayes CA, Flowers SA, Alagesan K, Kolarich D, Packer NH, Karlsson NG.

Biochim Biophys Acta. 2014 Jan;1844(1 Pt A):108-16. doi: 10.1016/j.bbapap.2013.04.018. Epub 2013 Apr 25.

PMID:
23624262
35.

Structural feature ions for distinguishing N- and O-linked glycan isomers by LC-ESI-IT MS/MS.

Everest-Dass AV, Abrahams JL, Kolarich D, Packer NH, Campbell MP.

J Am Soc Mass Spectrom. 2013 Jun;24(6):895-906. doi: 10.1007/s13361-013-0610-4. Epub 2013 Apr 20.

PMID:
23605685
36.

Tandem mass spectra of glycan substructures enable the multistage mass spectrometric identification of determinants on oligosaccharides.

Everest-Dass AV, Kolarich D, Campbell MP, Packer NH.

Rapid Commun Mass Spectrom. 2013 May 15;27(9):931-9. doi: 10.1002/rcm.6527.

PMID:
23592194
37.

The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting mass-spectrometry-based glycoanalytic data.

Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J, McBride R, Agravat S, Campbell MP, Kato M, Ranzinger R, Kettner C, York WS.

Mol Cell Proteomics. 2013 Apr;12(4):991-5. doi: 10.1074/mcp.O112.026492. Epub 2013 Feb 1.

38.

Symbol nomenclature for representing glycan structures: Extension to cover different carbohydrate types.

Harvey DJ, Merry AH, Royle L, Campbell MP, Rudd PM.

Proteomics. 2011 Nov;11(22):4291-5. doi: 10.1002/pmic.201100300. Epub 2011 Sep 27.

PMID:
21954138
39.

UniCarbKB: putting the pieces together for glycomics research.

Campbell MP, Hayes CA, Struwe WB, Wilkins MR, Aoki-Kinoshita KF, Harvey DJ, Rudd PM, Kolarich D, Lisacek F, Karlsson NG, Packer NH.

Proteomics. 2011 Nov;11(21):4117-21. doi: 10.1002/pmic.201100302. Epub 2011 Sep 19.

PMID:
21898825
40.

N-glycans modulate the function of human corticosteroid-binding globulin.

Sumer-Bayraktar Z, Kolarich D, Campbell MP, Ali S, Packer NH, Thaysen-Andersen M.

Mol Cell Proteomics. 2011 Aug;10(8):M111.009100. doi: 10.1074/mcp.M111.009100. Epub 2011 May 10.

41.

UniCarb-DB: a database resource for glycomic discovery.

Hayes CA, Karlsson NG, Struwe WB, Lisacek F, Rudd PM, Packer NH, Campbell MP.

Bioinformatics. 2011 May 1;27(9):1343-4. doi: 10.1093/bioinformatics/btr137. Epub 2011 Mar 12.

PMID:
21398669
42.

EUROCarbDB: An open-access platform for glycoinformatics.

von der Lieth CW, Freire AA, Blank D, Campbell MP, Ceroni A, Damerell DR, Dell A, Dwek RA, Ernst B, Fogh R, Frank M, Geyer H, Geyer R, Harrison MJ, Henrick K, Herget S, Hull WE, Ionides J, Joshi HJ, Kamerling JP, Leeflang BR, Lütteke T, Lundborg M, Maass K, Merry A, Ranzinger R, Rosen J, Royle L, Rudd PM, Schloissnig S, Stenutz R, Vranken WF, Widmalm G, Haslam SM.

Glycobiology. 2011 Apr;21(4):493-502. doi: 10.1093/glycob/cwq188. Epub 2010 Nov 23.

43.

Connectivity and binding-site recognition: applications relevant to drug design.

Illingworth CJ, Scott PD, Parkes KE, Snell CR, Campbell MP, Reynolds CA.

J Comput Chem. 2010 Nov 30;31(15):2677-88. doi: 10.1002/jcc.21561.

PMID:
20839295
44.

GlycoExtractor: a web-based interface for high throughput processing of HPLC-glycan data.

Artemenko NV, Campbell MP, Rudd PM.

J Proteome Res. 2010 Apr 5;9(4):2037-41. doi: 10.1021/pr901213u.

PMID:
20143869
45.

Proposal for a standard system for drawing structural diagrams of N- and O-linked carbohydrates and related compounds.

Harvey DJ, Merry AH, Royle L, Campbell MP, Dwek RA, Rudd PM.

Proteomics. 2009 Aug;9(15):3796-801. doi: 10.1002/pmic.200900096. Erratum in: Proteomics. 2009 Nov;9(21):5002.

PMID:
19670245
46.

GlycoBase and autoGU: tools for HPLC-based glycan analysis.

Campbell MP, Royle L, Radcliffe CM, Dwek RA, Rudd PM.

Bioinformatics. 2008 May 1;24(9):1214-6. doi: 10.1093/bioinformatics/btn090. Epub 2008 Mar 14.

PMID:
18344517
47.

HPLC-based analysis of serum N-glycans on a 96-well plate platform with dedicated database software.

Royle L, Campbell MP, Radcliffe CM, White DM, Harvey DJ, Abrahams JL, Kim YG, Henry GW, Shadick NA, Weinblatt ME, Lee DM, Rudd PM, Dwek RA.

Anal Biochem. 2008 May 1;376(1):1-12. doi: 10.1016/j.ab.2007.12.012. Epub 2007 Dec 23.

PMID:
18194658
48.

Entropy and oligomerization in GPCRs.

Thummer RP, Campbell MP, Dean MK, Frusher MJ, Scott PD, Reynolds CA.

J Mol Neurosci. 2005;26(2-3):113-22. Review.

PMID:
16012184
49.

The impact of diaphragm management on prolonged ventilator support after thoracoabdominal aortic repair.

Engle J, Safi HJ, Miller CC 3rd, Campbell MP, Harlin SA, Letsou GV, Lloyd MD KS, Root DB.

J Vasc Surg. 1999 Jan;29(1):150-6.

50.

Thoracic and thoracoabdominal aortic aneurysm repair using cardiopulmonary bypass, profound hypothermia, and circulatory arrest via left side of the chest incision.

Safi HJ, Miller CC 3rd, Subramaniam MH, Campbell MP, Iliopoulos DC, O'Donnell JJ, Reardon MJ, Letsou GV, Espada R.

J Vasc Surg. 1998 Oct;28(4):591-8.

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