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Items: 1 to 50 of 52

1.

Tacrolimus rescues the signaling and gene expression signature of endothelial ALK1 loss-of-function and improves HHT vascular pathology.

Ruiz S, Chandakkar P, Zhao H, Papoin J, Chatterjee PK, Christen E, Metz CN, Blanc L, Campagne F, Marambaud P.

Hum Mol Genet. 2017 Dec 15;26(24):4786-4798. doi: 10.1093/hmg/ddx358.

2.

Specific calpain inhibition protects kidney against inflammaging.

Hanouna G, Mesnard L, Vandermeersch S, Perez J, Placier S, Haymann JP, Campagne F, Moroch J, Bataille A, Baud L, Letavernier E.

Sci Rep. 2017 Aug 14;7(1):8016. doi: 10.1038/s41598-017-07922-1.

3.

Glomerular common gamma chain confers B- and T-cell-independent protection against glomerulonephritis.

Luque Y, Cathelin D, Vandermeersch S, Xu X, Sohier J, Placier S, Xu-Dubois YC, Louis K, Hertig A, Bories JC, Vasseur F, Campagne F, Di Santo JP, Vosshenrich C, Rondeau E, Mesnard L.

Kidney Int. 2017 May;91(5):1146-1158. doi: 10.1016/j.kint.2016.10.037. Epub 2017 Jan 19.

4.

A mouse model of hereditary hemorrhagic telangiectasia generated by transmammary-delivered immunoblocking of BMP9 and BMP10.

Ruiz S, Zhao H, Chandakkar P, Chatterjee PK, Papoin J, Blanc L, Metz CN, Campagne F, Marambaud P.

Sci Rep. 2016 Nov 22;5:37366. doi: 10.1038/srep37366.

5.

Exome Sequencing and Prediction of Long-Term Kidney Allograft Function.

Mesnard L, Muthukumar T, Burbach M, Li C, Shang H, Dadhania D, Lee JR, Sharma VK, Xiang J, Suberbielle C, Carmagnat M, Ouali N, Rondeau E, Friedewald JJ, Abecassis MM, Suthanthiran M, Campagne F.

PLoS Comput Biol. 2016 Sep 29;12(9):e1005088. doi: 10.1371/journal.pcbi.1005088. eCollection 2016 Sep.

6.

Whole-Exome Sequencing of Metastatic Cancer and Biomarkers of Treatment Response.

Beltran H, Eng K, Mosquera JM, Sigaras A, Romanel A, Rennert H, Kossai M, Pauli C, Faltas B, Fontugne J, Park K, Banfelder J, Prandi D, Madhukar N, Zhang T, Padilla J, Greco N, McNary TJ, Herrscher E, Wilkes D, MacDonald TY, Xue H, Vacic V, Emde AK, Oschwald D, Tan AY, Chen Z, Collins C, Gleave ME, Wang Y, Chakravarty D, Schiffman M, Kim R, Campagne F, Robinson BD, Nanus DM, Tagawa ST, Xiang JZ, Smogorzewska A, Demichelis F, Rickman DS, Sboner A, Elemento O, Rubin MA.

JAMA Oncol. 2015 Jul;1(4):466-74. doi: 10.1001/jamaoncol.2015.1313.

7.

In Silico Analysis of NF2 Gene Missense Mutations in Neurofibromatosis Type 2: From Genotype to Phenotype.

Heineman TE, Evans DG, Campagne F, Selesnick SH.

Otol Neurotol. 2015 Jun;36(5):908-14. doi: 10.1097/MAO.0000000000000639.

PMID:
25931164
8.

Language workbench user interfaces for data analysis.

Benson VM, Campagne F.

PeerJ. 2015 Feb 24;3:e800. doi: 10.7717/peerj.800. eCollection 2015.

9.

Effect of the CALHM1 G330D and R154H human variants on the control of cytosolic Ca2+ and Aβ levels.

Vingtdeux V, Tanis JE, Chandakkar P, Zhao H, Dreses-Werringloer U, Campagne F, Foskett JK, Marambaud P.

PLoS One. 2014 Nov 11;9(11):e112484. doi: 10.1371/journal.pone.0112484. eCollection 2014.

10.

Composable languages for bioinformatics: the NYoSh experiment.

Simi M, Campagne F.

PeerJ. 2014 Jan 2;2:e241. doi: 10.7717/peerj.241. eCollection 2014.

11.

Variability in DNA methylation defines novel epigenetic subgroups of DLBCL associated with different clinical outcomes.

Chambwe N, Kormaksson M, Geng H, De S, Michor F, Johnson NA, Morin RD, Scott DW, Godley LA, Gascoyne RD, Melnick A, Campagne F, Shaknovich R.

Blood. 2014 Mar 13;123(11):1699-708. doi: 10.1182/blood-2013-07-509885. Epub 2014 Jan 2.

12.

Compression of structured high-throughput sequencing data.

Campagne F, Dorff KC, Chambwe N, Robinson JT, Mesirov JP.

PLoS One. 2013 Nov 18;8(11):e79871. doi: 10.1371/journal.pone.0079871. eCollection 2013.

13.

GobyWeb: simplified management and analysis of gene expression and DNA methylation sequencing data.

Dorff KC, Chambwe N, Zeno Z, Simi M, Shaknovich R, Campagne F.

PLoS One. 2013 Jul 23;8(7):e69666. doi: 10.1371/journal.pone.0069666. Print 2013.

14.

Differential gene body methylation and reduced expression of cell adhesion and neurotransmitter receptor genes in adverse maternal environment.

Oh JE, Chambwe N, Klein S, Gal J, Andrews S, Gleason G, Shaknovich R, Melnick A, Campagne F, Toth M.

Transl Psychiatry. 2013 Jan 22;3:e218. doi: 10.1038/tp.2012.130.

15.

CALHM1 P86L polymorphism modulates CSF Aβ levels in cognitively healthy individuals at risk for Alzheimer's disease.

Koppel J, Campagne F, Vingtdeux V, Dreses-Werringloer U, Ewers M, Rujescu D, Hampel H, Gordon ML, Christen E, Chapuis J, Greenwald BS, Davies P, Marambaud P.

Mol Med. 2011 Sep-Oct;17(9-10):974-9. doi: 10.2119/molmed.2011.00154. Epub 2011 May 24.

16.

Growth arrest-specific 1 binds to and controls the maturation and processing of the amyloid-beta precursor protein.

Chapuis J, Vingtdeux V, Campagne F, Davies P, Marambaud P.

Hum Mol Genet. 2011 May 15;20(10):2026-36. doi: 10.1093/hmg/ddr085. Epub 2011 Feb 28.

17.

BDVal: reproducible large-scale predictive model development and validation in high-throughput datasets.

Dorff KC, Chambwe N, Srdanovic M, Campagne F.

Bioinformatics. 2010 Oct 1;26(19):2472-3. doi: 10.1093/bioinformatics/btq463. Epub 2010 Aug 11.

18.

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.

Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, Shaughnessy JD Jr, Oberthuer A, Thomas RS, Paules RS, Fielden M, Barlogie B, Chen W, Du P, Fischer M, Furlanello C, Gallas BD, Ge X, Megherbi DB, Symmans WF, Wang MD, Zhang J, Bitter H, Brors B, Bushel PR, Bylesjo M, Chen M, Cheng J, Cheng J, Chou J, Davison TS, Delorenzi M, Deng Y, Devanarayan V, Dix DJ, Dopazo J, Dorff KC, Elloumi F, Fan J, Fan S, Fan X, Fang H, Gonzaludo N, Hess KR, Hong H, Huan J, Irizarry RA, Judson R, Juraeva D, Lababidi S, Lambert CG, Li L, Li Y, Li Z, Lin SM, Liu G, Lobenhofer EK, Luo J, Luo W, McCall MN, Nikolsky Y, Pennello GA, Perkins RG, Philip R, Popovici V, Price ND, Qian F, Scherer A, Shi T, Shi W, Sung J, Thierry-Mieg D, Thierry-Mieg J, Thodima V, Trygg J, Vishnuvajjala L, Wang SJ, Wu J, Wu Y, Xie Q, Yousef WA, Zhang L, Zhang X, Zhong S, Zhou Y, Zhu S, Arasappan D, Bao W, Lucas AB, Berthold F, Brennan RJ, Buness A, Catalano JG, Chang C, Chen R, Cheng Y, Cui J, Czika W, Demichelis F, Deng X, Dosymbekov D, Eils R, Feng Y, Fostel J, Fulmer-Smentek S, Fuscoe JC, Gatto L, Ge W, Goldstein DR, Guo L, Halbert DN, Han J, Harris SC, Hatzis C, Herman D, Huang J, Jensen RV, Jiang R, Johnson CD, Jurman G, Kahlert Y, Khuder SA, Kohl M, Li J, Li L, Li M, Li QZ, Li S, Li Z, Liu J, Liu Y, Liu Z, Meng L, Madera M, Martinez-Murillo F, Medina I, Meehan J, Miclaus K, Moffitt RA, Montaner D, Mukherjee P, Mulligan GJ, Neville P, Nikolskaya T, Ning B, Page GP, Parker J, Parry RM, Peng X, Peterson RL, Phan JH, Quanz B, Ren Y, Riccadonna S, Roter AH, Samuelson FW, Schumacher MM, Shambaugh JD, Shi Q, Shippy R, Si S, Smalter A, Sotiriou C, Soukup M, Staedtler F, Steiner G, Stokes TH, Sun Q, Tan PY, Tang R, Tezak Z, Thorn B, Tsyganova M, Turpaz Y, Vega SC, Visintainer R, von Frese J, Wang C, Wang E, Wang J, Wang W, Westermann F, Willey JC, Woods M, Wu S, Xiao N, Xu J, Xu L, Yang L, Zeng X, Zhang J, Zhang L, Zhang M, Zhao C, Puri RK, Scherf U, Tong W, Wolfinger RD; MAQC Consortium.

Nat Biotechnol. 2010 Aug;28(8):827-38. doi: 10.1038/nbt.1665. Epub 2010 Jul 30.

19.

Introduction to the development and validation of predictive biomarker models from high-throughput data sets.

Deng X, Campagne F.

Methods Mol Biol. 2010;620:435-70. doi: 10.1007/978-1-60761-580-4_15.

PMID:
20652515
20.

GPCR-OKB: the G Protein Coupled Receptor Oligomer Knowledge Base.

Khelashvili G, Dorff K, Shan J, Camacho-Artacho M, Skrabanek L, Vroling B, Bouvier M, Devi LA, George SR, Javitch JA, Lohse MJ, Milligan G, Neubig RR, Palczewski K, Parmentier M, Pin JP, Vriend G, Campagne F, Filizola M.

Bioinformatics. 2010 Jul 15;26(14):1804-5. doi: 10.1093/bioinformatics/btq264. Epub 2010 May 25.

21.

DNA methylation signatures identify biologically distinct subtypes in acute myeloid leukemia.

Figueroa ME, Lugthart S, Li Y, Erpelinck-Verschueren C, Deng X, Christos PJ, Schifano E, Booth J, van Putten W, Skrabanek L, Campagne F, Mazumdar M, Greally JM, Valk PJ, Löwenberg B, Delwel R, Melnick A.

Cancer Cell. 2010 Jan 19;17(1):13-27. doi: 10.1016/j.ccr.2009.11.020. Epub 2010 Jan 7.

22.

Urine proteomics for profiling of human disease using high accuracy mass spectrometry.

Kentsis A, Monigatti F, Dorff K, Campagne F, Bachur R, Steen H.

Proteomics Clin Appl. 2009 Sep 1;3(9):1052-1061.

23.

Discovery and validation of urine markers of acute pediatric appendicitis using high-accuracy mass spectrometry.

Kentsis A, Lin YY, Kurek K, Calicchio M, Wang YY, Monigatti F, Campagne F, Lee R, Horwitz B, Steen H, Bachur R.

Ann Emerg Med. 2010 Jan;55(1):62-70.e4. doi: 10.1016/j.annemergmed.2009.04.020. Epub 2009 Jun 25.

24.

[CALHM1, a novel gene to blame in Alzheimer disease].

Lambert JC, Campagne F, Marambaud P.

Med Sci (Paris). 2008 Nov;24(11):923-4. doi: 10.1051/medsci/20082411923. French. No abstract available.

25.

LIM kinase 1 and cofilin regulate actin filament population required for dynamin-dependent apical carrier fission from the trans-Golgi network.

Salvarezza SB, Deborde S, Schreiner R, Campagne F, Kessels MM, Qualmann B, Caceres A, Kreitzer G, Rodriguez-Boulan E.

Mol Biol Cell. 2009 Jan;20(1):438-51. doi: 10.1091/mbc.E08-08-0891. Epub 2008 Nov 5.

26.

A polymorphism in CALHM1 influences Ca2+ homeostasis, Abeta levels, and Alzheimer's disease risk.

Dreses-Werringloer U, Lambert JC, Vingtdeux V, Zhao H, Vais H, Siebert A, Jain A, Koppel J, Rovelet-Lecrux A, Hannequin D, Pasquier F, Galimberti D, Scarpini E, Mann D, Lendon C, Campion D, Amouyel P, Davies P, Foskett JK, Campagne F, Marambaud P.

Cell. 2008 Jun 27;133(7):1149-61. doi: 10.1016/j.cell.2008.05.048.

27.

Beyond tissueInfo: functional prediction using tissue expression profile similarity searches.

Aguilar D, Skrabanek L, Gross SS, Oliva B, Campagne F.

Nucleic Acids Res. 2008 Jun;36(11):3728-37. doi: 10.1093/nar/gkn233. Epub 2008 May 15.

28.
29.

Requirements and ontology for a G protein-coupled receptor oligomerization knowledge base.

Skrabanek L, Murcia M, Bouvier M, Devi L, George SR, Lohse MJ, Milligan G, Neubig R, Palczewski K, Parmentier M, Pin JP, Vriend G, Javitch JA, Campagne F, Filizola M.

BMC Bioinformatics. 2007 May 30;8:177.

30.

Gene expression profiling separates chromophobe renal cell carcinoma from oncocytoma and identifies vesicular transport and cell junction proteins as differentially expressed genes.

Rohan S, Tu JJ, Kao J, Mukherjee P, Campagne F, Zhou XK, Hyjek E, Alonso MA, Chen YT.

Clin Cancer Res. 2006 Dec 1;12(23):6937-45.

31.

Mining expressed sequence tags identifies cancer markers of clinical interest.

Campagne F, Skrabanek L.

BMC Bioinformatics. 2006 Nov 1;7:481.

32.

SNOSID, a proteomic method for identification of cysteine S-nitrosylation sites in complex protein mixtures.

Hao G, Derakhshan B, Shi L, Campagne F, Gross SS.

Proc Natl Acad Sci U S A. 2006 Jan 24;103(4):1012-7. Epub 2006 Jan 17. Erratum in: Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5242.

33.

Minimum information requested in the annotation of biochemical models (MIRIAM).

Le Novère N, Finney A, Hucka M, Bhalla US, Campagne F, Collado-Vides J, Crampin EJ, Halstead M, Klipp E, Mendes P, Nielsen P, Sauro H, Shapiro B, Snoep JL, Spence HD, Wanner BL.

Nat Biotechnol. 2005 Dec;23(12):1509-15.

PMID:
16333295
34.

Crooked tail (Cd) model of human folate-responsive neural tube defects is mutated in Wnt coreceptor lipoprotein receptor-related protein 6.

Carter M, Chen X, Slowinska B, Minnerath S, Glickstein S, Shi L, Campagne F, Weinstein H, Ross ME.

Proc Natl Acad Sci U S A. 2005 Sep 6;102(36):12843-8. Epub 2005 Aug 26.

35.

Pseudomonas aeruginosa SoxR does not conform to the archetypal paradigm for SoxR-dependent regulation of the bacterial oxidative stress adaptive response.

Palma M, Zurita J, Ferreras JA, Worgall S, Larone DH, Shi L, Campagne F, Quadri LE.

Infect Immun. 2005 May;73(5):2958-66.

36.
37.

Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases.

Srdanovic M, Schenk U, Schwieger M, Campagne F.

BMC Bioinformatics. 2005 Jan 10;6:5.

38.

Quantitative information management for the biochemical computation of cellular networks.

Campagne F, Neves S, Chang CW, Skrabanek L, Ram PT, Iyengar R, Weinstein H.

Sci STKE. 2004 Aug 24;2004(248):pl11.

PMID:
15340175
39.

Characterization of the mouse adeno-associated virus AAVS1 ortholog.

Dutheil N, Yoon-Robarts M, Ward P, Henckaerts E, Skrabanek L, Berns KI, Campagne F, Linden RM.

J Virol. 2004 Aug;78(16):8917-21.

40.

Batch mode generation of residue-based diagrams of proteins.

Campagne F, Bettler E, Vriend G, Weinstein H.

Bioinformatics. 2003 Sep 22;19(14):1854-5.

PMID:
14512361
41.

Building protein diagrams on the web with the residue-based diagram editor RbDe.

Skrabanek L, Campagne F, Weinstein H.

Nucleic Acids Res. 2003 Jul 1;31(13):3856-8.

42.

GPCRDB information system for G protein-coupled receptors.

Horn F, Bettler E, Oliveira L, Campagne F, Cohen FE, Vriend G.

Nucleic Acids Res. 2003 Jan 1;31(1):294-7.

43.

Interoperability calls for an unusual mix of skills.

Campagne F.

Nature. 2002 Jul 11;418(6894):125. No abstract available.

PMID:
12110864
44.

TissueInfo: high-throughput identification of tissue expression profiles and specificity.

Skrabanek L, Campagne F.

Nucleic Acids Res. 2001 Nov 1;29(21):E102-2.

46.

Tas1r3, encoding a new candidate taste receptor, is allelic to the sweet responsiveness locus Sac.

Max M, Shanker YG, Huang L, Rong M, Liu Z, Campagne F, Weinstein H, Damak S, Margolskee RF.

Nat Genet. 2001 May;28(1):58-63.

PMID:
11326277
47.

Clustalnet: the joining of Clustal and CORBA.

Campagne F.

Bioinformatics. 2000 Jul;16(7):606-12.

PMID:
11038330
48.

Interactive construction of residue-based diagrams of proteins: the RbDe web service.

Konvicka K, Campagne F, Weinstein H.

Protein Eng. 2000 Jun;13(6):395-6.

PMID:
10877849
49.
50.

Visualisation and integration of G protein-coupled receptor related information help the modelling: description and applications of the Viseur program.

Campagne F, Jestin R, Reversat JL, Bernassau JM, Maigret B.

J Comput Aided Mol Des. 1999 Nov;13(6):625-43.

PMID:
10584220

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