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Niche adaptation limits bacteriophage predation of Vibrio cholerae in a nutrient-poor aquatic environment.

Silva-Valenzuela CA, Camilli A.

Proc Natl Acad Sci U S A. 2019 Jan 29;116(5):1627-1632. doi: 10.1073/pnas.1810138116. Epub 2019 Jan 11.


Phenotypic and genomic analyses of bacteriophages targeting environmental and clinical CS3-expressing enterotoxigenic Escherichia coli (ETEC) strains.

Chakraborty S, Mentzer AV, Begum YA, Manzur M, Hasan M, Ghosh AN, Hossain MA, Camilli A, Qadri F.

PLoS One. 2018 Dec 20;13(12):e0209357. doi: 10.1371/journal.pone.0209357. eCollection 2018.


Vibrio cholerae motility exerts drag force to impede attack by the bacterial predator Bdellovibrio bacteriovorus.

Duncan MC, Forbes JC, Nguyen Y, Shull LM, Gillette RK, Lazinski DW, Ali A, Shanks RMQ, Kadouri DE, Camilli A.

Nat Commun. 2018 Nov 12;9(1):4757. doi: 10.1038/s41467-018-07245-3.


Correction: Nasopharyngeal Exposure to Streptococcus pneumoniae Induces Extended Age-Dependent Protection against Pulmonary Infection Mediated by Antibodies and CD138+ Cells.

Bou Ghanem EN, Maung NHT, Siwapornchai N, Goodwin AE, Clark S, Muñoz-Elías EJ, Camilli A, Gerstein RM, Leong JM.

J Immunol. 2018 Dec 1;201(11):3471. doi: 10.4049/jimmunol.1801354. Epub 2018 Oct 29. No abstract available.


Lon Protease Has Multifaceted Biological Functions in Acinetobacter baumannii.

Ching C, Yang B, Onwubueke C, Lazinski D, Camilli A, Godoy VG.

J Bacteriol. 2018 Dec 20;201(2). pii: e00536-18. doi: 10.1128/JB.00536-18. Print 2019 Jan 15.


Transposon Sequencing of Vibrio cholerae in the Infant Rabbit Model of Cholera.

Shull LM, Camilli A.

Methods Mol Biol. 2018;1839:103-116. doi: 10.1007/978-1-4939-8685-9_10.


cAMP Receptor Protein Controls Vibrio cholerae Gene Expression in Response to Host Colonization.

Manneh-Roussel J, Haycocks JRJ, Magán A, Perez-Soto N, Voelz K, Camilli A, Krachler AM, Grainger DC.

MBio. 2018 Jul 10;9(4). pii: e00966-18. doi: 10.1128/mBio.00966-18.


Vibrio cholerae outer membrane vesicles inhibit bacteriophage infection.

Reyes-Robles T, Dillard RS, Cairns LS, Silva-Valenzuela CA, Housman M, Ali A, Wright ER, Camilli A.

J Bacteriol. 2018 Apr 16. pii: JB.00792-17. doi: 10.1128/JB.00792-17. [Epub ahead of print]


Nasopharyngeal Exposure to Streptococcus pneumoniae Induces Extended Age-Dependent Protection against Pulmonary Infection Mediated by Antibodies and CD138+ Cells.

Bou Ghanem EN, Maung NHT, Siwapornchai N, Goodwin AE, Clark S, Muñoz-Elías EJ, Camilli A, Gerstein RM, Leong JM.

J Immunol. 2018 Jun 1;200(11):3739-3751. doi: 10.4049/jimmunol.1701065. Epub 2018 Apr 16. Erratum in: J Immunol. 2018 Dec 1;201(11):3471.


Genome-wide detection of conservative site-specific recombination in bacteria.

Sekulovic O, Mathias Garrett E, Bourgeois J, Tamayo R, Shen A, Camilli A.

PLoS Genet. 2018 Apr 5;14(4):e1007332. doi: 10.1371/journal.pgen.1007332. eCollection 2018 Apr.


Mechanisms of the evolutionary arms race between Vibrio cholerae and Vibriophage clinical isolates.

Yen M, Camilli A.

Int Microbiol. 2017 Sep;20(3):116-120. doi: 10.2436/20.1501.01.292. Review.


Cyclic AMP Regulates Bacterial Persistence through Repression of the Oxidative Stress Response and SOS-Dependent DNA Repair in Uropathogenic Escherichia coli.

Molina-Quiroz RC, Silva-Valenzuela C, Brewster J, Castro-Nallar E, Levy SB, Camilli A.

MBio. 2018 Jan 9;9(1). pii: e02144-17. doi: 10.1128/mBio.02144-17.


Colistin resistant Escherichia coli carrying mcr-1 in urban sludge samples: Dhaka, Bangladesh.

Islam A, Rahman Z, Monira S, Rahman MA, Camilli A, George CM, Ahmed N, Alam M.

Gut Pathog. 2017 Dec 20;9:77. doi: 10.1186/s13099-017-0227-4. eCollection 2017.


Existence of a novel qepA variant in quinolone resistant Escherichia coli from aquatic habitats of Bangladesh.

Rahman Z, Islam A, Rashid MU, Johura FT, Monira S, Watanabe H, Ahmed N, Camilli A, Alam M.

Gut Pathog. 2017 Oct 23;9:58. doi: 10.1186/s13099-017-0207-8. eCollection 2017.


Growth arrest and a persister state enable resistance to osmotic shock and facilitate dissemination of Vibrio cholerae.

Silva-Valenzuela CA, Lazinski DW, Kahne SC, Nguyen Y, Molina-Quiroz RC, Camilli A.

ISME J. 2017 Dec;11(12):2718-2728. doi: 10.1038/ismej.2017.121. Epub 2017 Jul 25.


Acute Hepatopancreatic Necrosis Disease-Causing Vibrio parahaemolyticus Strains Maintain an Antibacterial Type VI Secretion System with Versatile Effector Repertoires.

Li P, Kinch LN, Ray A, Dalia AB, Cong Q, Nunan LM, Camilli A, Grishin NV, Salomon D, Orth K.

Appl Environ Microbiol. 2017 Jun 16;83(13). pii: e00737-17. doi: 10.1128/AEM.00737-17. Print 2017 Jul 1.


A cocktail of three virulent bacteriophages prevents Vibrio cholerae infection in animal models.

Yen M, Cairns LS, Camilli A.

Nat Commun. 2017 Feb 1;8:14187. doi: 10.1038/ncomms14187.


Immunity Provided by an Outer Membrane Vesicle Cholera Vaccine Is Due to O-Antigen-Specific Antibodies Inhibiting Bacterial Motility.

Wang Z, Lazinski DW, Camilli A.

Infect Immun. 2016 Dec 29;85(1). pii: e00626-16. doi: 10.1128/IAI.00626-16. Print 2017 Jan.


A comparative study of ChIP-seq sequencing library preparation methods.

Sundaram AY, Hughes T, Biondi S, Bolduc N, Bowman SK, Camilli A, Chew YC, Couture C, Farmer A, Jerome JP, Lazinski DW, McUsic A, Peng X, Shazand K, Xu F, Lyle R, Gilfillan GD.

BMC Genomics. 2016 Oct 21;17(1):816.


ManLMN is a glucose transporter and central metabolic regulator in Streptococcus pneumoniae.

Fleming E, Camilli A.

Mol Microbiol. 2016 Nov;102(3):467-487. doi: 10.1111/mmi.13473. Epub 2016 Aug 18.


Transposon-Sequencing Analysis Unveils Novel Genes Involved in the Generation of Persister Cells in Uropathogenic Escherichia coli.

Molina-Quiroz RC, Lazinski DW, Camilli A, Levy SB.

Antimicrob Agents Chemother. 2016 Oct 21;60(11):6907-6910. doi: 10.1128/AAC.01617-16. Print 2016 Nov.


Global Tn-seq analysis of carbohydrate utilization and vertebrate infectivity of Borrelia burgdorferi.

Troy EB, Lin T, Gao L, Lazinski DW, Lundt M, Camilli A, Norris SJ, Hu LT.

Mol Microbiol. 2016 Sep;101(6):1003-23. doi: 10.1111/mmi.13437. Epub 2016 Jul 15.


Mapping to Support Fine Scale Epidemiological Cholera Investigations: A Case Study of Spatial Video in Haiti.

Curtis A, Blackburn JK, Smiley SL, Yen M, Camilli A, Alam MT, Ali A, Morris JG Jr.

Int J Environ Res Public Health. 2016 Feb 3;13(2):187. doi: 10.3390/ijerph13020187.


A globally distributed mobile genetic element inhibits natural transformation of Vibrio cholerae.

Dalia AB, Seed KD, Calderwood SB, Camilli A.

Proc Natl Acad Sci U S A. 2015 Aug 18;112(33):10485-90. doi: 10.1073/pnas.1509097112. Epub 2015 Aug 3.


Vibrio cholerae phosphatases required for the utilization of nucleotides and extracellular DNA as phosphate sources.

McDonough E, Kamp H, Camilli A.

Mol Microbiol. 2016 Feb;99(3):453-69. doi: 10.1111/mmi.13128. Epub 2015 Aug 16.


Peptidoglycan Branched Stem Peptides Contribute to Streptococcus pneumoniae Virulence by Inhibiting Pneumolysin Release.

Greene NG, Narciso AR, Filipe SR, Camilli A.

PLoS Pathog. 2015 Jun 26;11(6):e1004996. doi: 10.1371/journal.ppat.1004996. eCollection 2015 Jun.


Carbon catabolite repression by seryl phosphorylated HPr is essential to Streptococcus pneumoniae in carbohydrate-rich environments.

Fleming E, Lazinski DW, Camilli A.

Mol Microbiol. 2015 Jul;97(2):360-80. doi: 10.1111/mmi.13033. Epub 2015 May 15.


The VieB auxiliary protein negatively regulates the VieSA signal transduction system in Vibrio cholerae.

Mitchell SL, Ismail AM, Kenrick SA, Camilli A.

BMC Microbiol. 2015 Mar 4;15:59. doi: 10.1186/s12866-015-0387-7.


Genetic basis of persister tolerance to aminoglycosides in Escherichia coli.

Shan Y, Lazinski D, Rowe S, Camilli A, Lewis K.

MBio. 2015 Apr 7;6(2). pii: e00078-15. doi: 10.1128/mBio.00078-15.


Mutations in pneumococcal cpsE generated via in vitro serial passaging reveal a potential mechanism of reduced encapsulation utilized by a conjunctival isolate.

Shainheit MG, Valentino MD, Gilmore MS, Camilli A.

J Bacteriol. 2015 May;197(10):1781-91. doi: 10.1128/JB.02602-14. Epub 2015 Mar 16.


Genome-Wide Fitness and Genetic Interactions Determined by Tn-seq, a High-Throughput Massively Parallel Sequencing Method for Microorganisms.

van Opijnen T, Lazinski DW, Camilli A.

Curr Protoc Microbiol. 2015 Feb 2;36:1E.3.1-24. doi: 10.1002/9780471729259.mc01e03s36.


Neutrophil IL-1β processing induced by pneumolysin is mediated by the NLRP3/ASC inflammasome and caspase-1 activation and is dependent on K+ efflux.

Karmakar M, Katsnelson M, Malak HA, Greene NG, Howell SJ, Hise AG, Camilli A, Kadioglu A, Dubyak GR, Pearlman E.

J Immunol. 2015 Feb 15;194(4):1763-75. doi: 10.4049/jimmunol.1401624. Epub 2015 Jan 21.


The α-tocopherol form of vitamin E reverses age-associated susceptibility to streptococcus pneumoniae lung infection by modulating pulmonary neutrophil recruitment.

Bou Ghanem EN, Clark S, Du X, Wu D, Camilli A, Leong JM, Meydani SN.

J Immunol. 2015 Feb 1;194(3):1090-9. doi: 10.4049/jimmunol.1402401. Epub 2014 Dec 15.


Genes contributing to Staphylococcus aureus fitness in abscess- and infection-related ecologies.

Valentino MD, Foulston L, Sadaka A, Kos VN, Villet RA, Santa Maria J Jr, Lazinski DW, Camilli A, Walker S, Hooper DC, Gilmore MS.

MBio. 2014 Sep 2;5(5):e01729-14. doi: 10.1128/mBio.01729-14.


Evolutionary consequences of intra-patient phage predation on microbial populations.

Seed KD, Yen M, Shapiro BJ, Hilaire IJ, Charles RC, Teng JE, Ivers LC, Boncy J, Harris JB, Camilli A.

Elife. 2014 Aug 26;3:e03497. doi: 10.7554/eLife.03497.


Multiplex genome editing by natural transformation.

Dalia AB, McDonough E, Camilli A.

Proc Natl Acad Sci U S A. 2014 Jun 17;111(24):8937-42. doi: 10.1073/pnas.1406478111. Epub 2014 Jun 2.


Genomic analyses of pneumococci from children with sickle cell disease expose host-specific bacterial adaptations and deficits in current interventions.

Carter R, Wolf J, van Opijnen T, Muller M, Obert C, Burnham C, Mann B, Li Y, Hayden RT, Pestina T, Persons D, Camilli A, Flynn PM, Tuomanen EI, Rosch JW.

Cell Host Microbe. 2014 May 14;15(5):587-599. doi: 10.1016/j.chom.2014.04.005.


Genome-Wide Fitness and Genetic Interactions Determined by Tn-seq, a High-Throughput Massively Parallel Sequencing Method for Microorganisms.

van Opijnen T, Lazinski DW, Camilli A.

Curr Protoc Mol Biol. 2014 Apr 14;106:7.16.1-24. doi: 10.1002/0471142727.mb0716s106. Review.


Vibrio cholerae-induced inflammation in the neonatal mouse cholera model.

Bishop AL, Patimalla B, Camilli A.

Infect Immun. 2014 Jun;82(6):2434-47. doi: 10.1128/IAI.00054-14. Epub 2014 Mar 31.


Identification of in vivo regulators of the Vibrio cholerae xds gene using a high-throughput genetic selection.

McDonough E, Lazinski DW, Camilli A.

Mol Microbiol. 2014 Apr;92(2):302-15. doi: 10.1111/mmi.12557. Epub 2014 Mar 14.


The core promoter of the capsule operon of Streptococcus pneumoniae is necessary for colonization and invasive disease.

Shainheit MG, Mulé M, Camilli A.

Infect Immun. 2014 Feb;82(2):694-705. doi: 10.1128/IAI.01289-13. Epub 2013 Nov 25.


Identification of a membrane-bound transcriptional regulator that links chitin and natural competence in Vibrio cholerae.

Dalia AB, Lazinski DW, Camilli A.

MBio. 2014 Jan 28;5(1):e01028-13. doi: 10.1128/mBio.01028-13.


Gene fitness landscapes of Vibrio cholerae at important stages of its life cycle.

Kamp HD, Patimalla-Dipali B, Lazinski DW, Wallace-Gadsden F, Camilli A.

PLoS Pathog. 2013;9(12):e1003800. doi: 10.1371/journal.ppat.1003800. Epub 2013 Dec 26.


A core microbiome associated with the peritoneal tumors of pseudomyxoma peritonei.

Gilbreath JJ, Semino-Mora C, Friedline CJ, Liu H, Bodi KL, McAvoy TJ, Francis J, Nieroda C, Sardi A, Dubois A, Lazinski DW, Camilli A, Testerman TL, Merrell DS.

Orphanet J Rare Dis. 2013 Jul 12;8:105. doi: 10.1186/1750-1172-8-105.


Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms.

van Opijnen T, Camilli A.

Nat Rev Microbiol. 2013 Jul;11(7):435-42. doi: 10.1038/nrmicro3033. Epub 2013 May 28. Review.


Understanding barriers to Borrelia burgdorferi dissemination during infection using massively parallel sequencing.

Troy EB, Lin T, Gao L, Lazinski DW, Camilli A, Norris SJ, Hu LT.

Infect Immun. 2013 Jul;81(7):2347-57. doi: 10.1128/IAI.00266-13. Epub 2013 Apr 22.


Characterization of undermethylated sites in Vibrio cholerae.

Dalia AB, Lazinski DW, Camilli A.

J Bacteriol. 2013 May;195(10):2389-99. doi: 10.1128/JB.02112-12. Epub 2013 Mar 15.


A bacteriophage encodes its own CRISPR/Cas adaptive response to evade host innate immunity.

Seed KD, Lazinski DW, Calderwood SB, Camilli A.

Nature. 2013 Feb 28;494(7438):489-91. doi: 10.1038/nature11927.


Genotyping 1000 yeast strains by next-generation sequencing.

Wilkening S, Tekkedil MM, Lin G, Fritsch ES, Wei W, Gagneur J, Lazinski DW, Camilli A, Steinmetz LM.

BMC Genomics. 2013 Feb 9;14:90. doi: 10.1186/1471-2164-14-90.


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