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Items: 1 to 50 of 87

1.

p190 RhoGAP promotes contact inhibition in epithelial cells by repressing YAP activity.

Frank SR, Köllmann CP, Luong P, Galli GG, Zou L, Bernards A, Getz G, Calogero RA, Frödin M, Hansen SH.

J Cell Biol. 2018 Jun 22. pii: jcb.201710058. doi: 10.1083/jcb.201710058. [Epub ahead of print]

PMID:
29934311
2.

Laser capture microdissection for transcriptomic profiles in human skin biopsies.

Santoro S, Lopez ID, Lombardi R, Zauli A, Osiceanu AM, Sorosina M, Clarelli F, Peroni S, Cazzato D, Marchi M, Quattrini A, Comi G, Calogero RA, Lauria G, Martinelli Boneschi F.

BMC Mol Biol. 2018 Jun 19;19(1):7. doi: 10.1186/s12867-018-0108-5.

3.

microRNA profiles in urine by next-generation sequencing can stratify bladder cancer subtypes.

Pardini B, Cordero F, Naccarati A, Viberti C, Birolo G, Oderda M, Di Gaetano C, Arigoni M, Martina F, Calogero RA, Sacerdote C, Gontero P, Vineis P, Matullo G.

Oncotarget. 2018 Apr 17;9(29):20658-20669. doi: 10.18632/oncotarget.25057. eCollection 2018 Apr 17.

4.

Luminal breast cancer-specific circular RNAs uncovered by a novel tool for data analysis.

Coscujuela Tarrero L, Ferrero G, Miano V, De Intinis C, Ricci L, Arigoni M, Riccardo F, Annaratone L, Castellano I, Calogero RA, Beccuti M, Cordero F, De Bortoli M.

Oncotarget. 2018 Feb 19;9(18):14580-14596. doi: 10.18632/oncotarget.24522. eCollection 2018 Mar 6.

5.

Small non-coding RNA profiling in human biofluids and surrogate tissues from healthy individuals: description of the diverse and most represented species.

Ferrero G, Cordero F, Tarallo S, Arigoni M, Riccardo F, Gallo G, Ronco G, Allasia M, Kulkarni N, Matullo G, Vineis P, Calogero RA, Pardini B, Naccarati A.

Oncotarget. 2017 Dec 14;9(3):3097-3111. doi: 10.18632/oncotarget.23203. eCollection 2018 Jan 9.

6.

Clonal analysis of lineage fate in native haematopoiesis.

Rodriguez-Fraticelli AE, Wolock SL, Weinreb CS, Panero R, Patel SH, Jankovic M, Sun J, Calogero RA, Klein AM, Camargo FD.

Nature. 2018 Jan 11;553(7687):212-216. doi: 10.1038/nature25168. Epub 2018 Jan 3.

PMID:
29323290
7.

SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer.

Beccuti M, Cordero F, Arigoni M, Panero R, Amparore EG, Donatelli S, Calogero RA.

Bioinformatics. 2018 Mar 1;34(5):871-872. doi: 10.1093/bioinformatics/btx674.

8.

Deregulation of MicroRNAs mediated control of carnitine cycle in prostate cancer: molecular basis and pathophysiological consequences.

Valentino A, Calarco A, Di Salle A, Finicelli M, Crispi S, Calogero RA, Riccardo F, Sciarra A, Gentilucci A, Galderisi U, Margarucci S, Peluso G.

Oncogene. 2017 Oct 26;36(43):6030-6040. doi: 10.1038/onc.2017.216. Epub 2017 Jul 3.

PMID:
28671672
9.

LSD1 mediates MYCN control of epithelial-mesenchymal transition through silencing of metastatic suppressor NDRG1 gene.

Ambrosio S, Amente S, Saccà CD, Capasso M, Calogero RA, Lania L, Majello B.

Oncotarget. 2017 Jan 17;8(3):3854-3869. doi: 10.18632/oncotarget.12924.

10.

A novel infection- and inflammation-associated molecular signature in peripheral blood of myasthenia gravis patients.

Barzago C, Lum J, Cavalcante P, Srinivasan KG, Faggiani E, Camera G, Bonanno S, Andreetta F, Antozzi C, Baggi F, Calogero RA, Bernasconi P, Mantegazza R, Mori L, Zolezzi F.

Immunobiology. 2016 Nov;221(11):1227-36. doi: 10.1016/j.imbio.2016.06.012. Epub 2016 Jun 15.

PMID:
27387891
11.

A hypoxic signature marks tumors formed by disseminated tumor cells in the BALB-neuT mammary cancer model.

Msaki A, Pastò A, Curtarello M, Arigoni M, Barutello G, Calogero RA, Macagno M, Cavallo F, Amadori A, Indraccolo S.

Oncotarget. 2016 May 31;7(22):33081-95. doi: 10.18632/oncotarget.8859.

12.

Erratum for Baddal et al., Dual RNA-seq of Nontypeable Haemophilus influenzae and Host Cell Transcriptomes Reveals Novel Insights into Host-Pathogen Cross Talk.

Baddal B, Muzzi A, Censini S, Calogero RA, Torricelli G, Guidotti S, Taddei AR, Covacci A, Pizza M, Rappuoli R, Soriani M, Pezzicoli A.

MBio. 2016 Apr 12;7(2):e00373-16. doi: 10.1128/mBio.00373-16. No abstract available.

13.

Dual RNA-seq of Nontypeable Haemophilus influenzae and Host Cell Transcriptomes Reveals Novel Insights into Host-Pathogen Cross Talk.

Baddal B, Muzzi A, Censini S, Calogero RA, Torricelli G, Guidotti S, Taddei AR, Covacci A, Pizza M, Rappuoli R, Soriani M, Pezzicoli A.

MBio. 2015 Nov 17;6(6):e01765-15. doi: 10.1128/mBio.01765-15. Erratum in: MBio. 2016;7(2). pii: e00373-16. doi: 10.1128/mBio.00373-16.

14.

Immunotargeting of Antigen xCT Attenuates Stem-like Cell Behavior and Metastatic Progression in Breast Cancer.

Lanzardo S, Conti L, Rooke R, Ruiu R, Accart N, Bolli E, Arigoni M, Macagno M, Barrera G, Pizzimenti S, Aurisicchio L, Calogero RA, Cavallo F.

Cancer Res. 2016 Jan 1;76(1):62-72. doi: 10.1158/0008-5472.CAN-15-1208. Epub 2015 Nov 13.

15.

Novel insights into Notum and glypicans regulation in colorectal cancer.

De Robertis M, Arigoni M, Loiacono L, Riccardo F, Calogero RA, Feodorova Y, Tashkova D, Belovejdov V, Sarafian V, Cavallo F, Signori E.

Oncotarget. 2015 Dec 1;6(38):41237-57. doi: 10.18632/oncotarget.5652.

16.

YAP Drives Growth by Controlling Transcriptional Pause Release from Dynamic Enhancers.

Galli GG, Carrara M, Yuan WC, Valdes-Quezada C, Gurung B, Pepe-Mooney B, Zhang T, Geeven G, Gray NS, de Laat W, Calogero RA, Camargo FD.

Mol Cell. 2015 Oct 15;60(2):328-37. doi: 10.1016/j.molcel.2015.09.001. Epub 2015 Oct 1.

17.

Alternative splicing detection workflow needs a careful combination of sample prep and bioinformatics analysis.

Carrara M, Lum J, Cordero F, Beccuti M, Poidinger M, Donatelli S, Calogero RA, Zolezzi F.

BMC Bioinformatics. 2015;16 Suppl 9:S2. doi: 10.1186/1471-2105-16-S9-S2. Epub 2015 Jun 1.

18.

A versatile mathematical work-flow to explore how Cancer Stem Cell fate influences tumor progression.

Fornari C, Balbo G, Halawani SM, Ba-Rukab O, Ahmad AR, Calogero RA, Cordero F, Beccuti M.

BMC Syst Biol. 2015;9 Suppl 3:S1. doi: 10.1186/1752-0509-9-S3-S1. Epub 2015 Jun 1.

19.

RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application.

D'Antonio M, D'Onorio De Meo P, Pallocca M, Picardi E, D'Erchia AM, Calogero RA, Castrignanò T, Pesole G.

BMC Genomics. 2015;16:S3. doi: 10.1186/1471-2164-16-S6-S3. Epub 2015 Jun 1.

20.

Bisphenol A effects on gene expression in adipocytes from children: association with metabolic disorders.

Menale C, Piccolo MT, Cirillo G, Calogero RA, Papparella A, Mita L, Del Giudice EM, Diano N, Crispi S, Mita DG.

J Mol Endocrinol. 2015 Jun;54(3):289-303. doi: 10.1530/JME-14-0282. Epub 2015 Apr 15.

PMID:
25878060
21.

Quantifying entire transcriptomes by aligned RNA-seq data.

Calogero RA, Zolezzi F.

Methods Mol Biol. 2015;1269:163-72. doi: 10.1007/978-1-4939-2291-8_10.

PMID:
25577378
22.

Chimera: a Bioconductor package for secondary analysis of fusion products.

Beccuti M, Carrara M, Cordero F, Lazzarato F, Donatelli S, Nadalin F, Policriti A, Calogero RA.

Bioinformatics. 2014 Dec 15;30(24):3556-7. doi: 10.1093/bioinformatics/btu662. Epub 2014 Oct 6.

23.

Histone methyltransferase MMSET/NSD2 alters EZH2 binding and reprograms the myeloma epigenome through global and focal changes in H3K36 and H3K27 methylation.

Popovic R, Martinez-Garcia E, Giannopoulou EG, Zhang Q, Zhang Q, Ezponda T, Shah MY, Zheng Y, Will CM, Small EC, Hua Y, Bulic M, Jiang Y, Carrara M, Calogero RA, Kath WL, Kelleher NL, Wang JP, Elemento O, Licht JD.

PLoS Genet. 2014 Sep 4;10(9):e1004566. doi: 10.1371/journal.pgen.1004566. eCollection 2014 Sep.

24.

A mathematical-biological joint effort to investigate the tumor-initiating ability of Cancer Stem Cells.

Fornari C, Beccuti M, Lanzardo S, Conti L, Balbo G, Cavallo F, Calogero RA, Cordero F.

PLoS One. 2014 Sep 3;9(9):e106193. doi: 10.1371/journal.pone.0106193. eCollection 2014.

25.

The Hippo transducer YAP1 transforms activated satellite cells and is a potent effector of embryonal rhabdomyosarcoma formation.

Tremblay AM, Missiaglia E, Galli GG, Hettmer S, Urcia R, Carrara M, Judson RN, Thway K, Nadal G, Selfe JL, Murray G, Calogero RA, De Bari C, Zammit PS, Delorenzi M, Wagers AJ, Shipley J, Wackerhage H, Camargo FD.

Cancer Cell. 2014 Aug 11;26(2):273-87. doi: 10.1016/j.ccr.2014.05.029. Epub 2014 Jul 31.

26.

Critical roles for Rictor/Sin1 complexes in interferon-dependent gene transcription and generation of antiproliferative responses.

Kaur S, Kroczynska B, Sharma B, Sassano A, Arslan AD, Majchrzak-Kita B, Stein BL, McMahon B, Altman JK, Su B, Calogero RA, Fish EN, Platanias LC.

J Biol Chem. 2014 Mar 7;289(10):6581-91. doi: 10.1074/jbc.M113.537852. Epub 2014 Jan 27.

27.

Recombinant human lactoferrin induces human and mouse dendritic cell maturation via Toll-like receptors 2 and 4.

Spadaro M, Montone M, Arigoni M, Cantarella D, Forni G, Pericle F, Pascolo S, Calogero RA, Cavallo F.

FASEB J. 2014 Jan;28(1):416-29. doi: 10.1096/fj.13-229591. Epub 2013 Oct 2.

PMID:
24088817
28.

Genomic and proteomic analyses of Prdm5 reveal interactions with insulator binding proteins in embryonic stem cells.

Galli GG, Carrara M, Francavilla C, de Lichtenberg KH, Olsen JV, Calogero RA, Lund AH.

Mol Cell Biol. 2013 Nov;33(22):4504-16. doi: 10.1128/MCB.00545-13. Epub 2013 Sep 16.

29.

Functional and pharmacodynamic evaluation of metronomic cyclophosphamide and docetaxel regimen in castration-resistant prostate cancer.

Cardillo I, Spugnini EP, Galluzzo P, Contestabile M, Dell'Anna ML, Picardo M, Crispi S, Calogero RA, Piccolo MT, Arigoni M, Cantarella D, Boccellino M, Quagliuolo L, Ferretti G, Carlini P, Felici A, Boccardo F, Cognetti F, Baldi A.

Future Oncol. 2013 Sep;9(9):1375-88. doi: 10.2217/fon.13.99.

PMID:
23980684
30.

The noninflammatory role of high mobility group box 1/Toll-like receptor 2 axis in the self-renewal of mammary cancer stem cells.

Conti L, Lanzardo S, Arigoni M, Antonazzo R, Radaelli E, Cantarella D, Calogero RA, Cavallo F.

FASEB J. 2013 Dec;27(12):4731-44. doi: 10.1096/fj.13-230201. Epub 2013 Aug 22.

PMID:
23970797
31.

Prdm5 suppresses Apc(Min)-driven intestinal adenomas and regulates monoacylglycerol lipase expression.

Galli GG, Multhaupt HA, Carrara M, de Lichtenberg KH, Christensen IB, Linnemann D, Santoni-Rugiu E, Calogero RA, Lund AH.

Oncogene. 2014 Jun 19;33(25):3342-50. doi: 10.1038/onc.2013.283. Epub 2013 Jul 22.

32.

State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues?

Carrara M, Beccuti M, Cavallo F, Donatelli S, Lazzarato F, Cordero F, Calogero RA.

BMC Bioinformatics. 2013;14 Suppl 7:S2. doi: 10.1186/1471-2105-14-S7-S2. Epub 2013 Apr 22.

33.

Intelligent informatics in biomedicine.

Chang HT, Calogero RA, Draghici S, Ray O, Pai TW.

Biomed Res Int. 2013;2013:185839. doi: 10.1155/2013/185839. Epub 2013 Apr 22. No abstract available.

34.

miR-135b coordinates progression of ErbB2-driven mammary carcinomas through suppression of MID1 and MTCH2.

Arigoni M, Barutello G, Riccardo F, Ercole E, Cantarella D, Orso F, Conti L, Lanzardo S, Taverna D, Merighi I, Calogero RA, Cavallo F, Quaglino E.

Am J Pathol. 2013 Jun;182(6):2058-70. doi: 10.1016/j.ajpath.2013.02.046. Epub 2013 Apr 23.

35.

State-of-the-art fusion-finder algorithms sensitivity and specificity.

Carrara M, Beccuti M, Lazzarato F, Cavallo F, Cordero F, Donatelli S, Calogero RA.

Biomed Res Int. 2013;2013:340620. doi: 10.1155/2013/340620. Epub 2013 Feb 17.

36.

Transcriptional profiling of endometriosis tissues identifies genes related to organogenesis defects.

Crispi S, Piccolo MT, D'Avino A, Donizetti A, Viceconte R, Spyrou M, Calogero RA, Baldi A, Signorile PG.

J Cell Physiol. 2013 Sep;228(9):1927-34. doi: 10.1002/jcp.24358.

PMID:
23460397
37.

Mimicking p14ARF phosphorylation influences its ability to restrain cell proliferation.

Vivo M, Ranieri M, Sansone F, Santoriello C, Calogero RA, Calabrò V, Pollice A, La Mantia G.

PLoS One. 2013;8(1):e53631. doi: 10.1371/journal.pone.0053631. Epub 2013 Jan 7.

38.

Large disclosing the nature of computational tools for the analysis of next generation sequencing data.

Cordero F, Beccuti M, Donatelli S, Calogero RA.

Curr Top Med Chem. 2012;12(12):1320-30. Review.

PMID:
22690679
39.

Prdm5 regulates collagen gene transcription by association with RNA polymerase II in developing bone.

Galli GG, Honnens de Lichtenberg K, Carrara M, Hans W, Wuelling M, Mentz B, Multhaupt HA, Fog CK, Jensen KT, Rappsilber J, Vortkamp A, Coulton L, Fuchs H, Gailus-Durner V, Hrabě de Angelis M, Calogero RA, Couchman JR, Lund AH.

PLoS Genet. 2012;8(5):e1002711. doi: 10.1371/journal.pgen.1002711. Epub 2012 May 10.

40.

Optimizing a massive parallel sequencing workflow for quantitative miRNA expression analysis.

Cordero F, Beccuti M, Arigoni M, Donatelli S, Calogero RA.

PLoS One. 2012;7(2):e31630. doi: 10.1371/journal.pone.0031630. Epub 2012 Feb 20.

41.

Cell-to-cell signaling influences the fate of prostate cancer stem cells and their potential to generate more aggressive tumors.

Salvatori L, Caporuscio F, Verdina A, Starace G, Crispi S, Nicotra MR, Russo A, Calogero RA, Morgante E, Natali PG, Russo MA, Petrangeli E.

PLoS One. 2012;7(2):e31467. doi: 10.1371/journal.pone.0031467. Epub 2012 Feb 6.

42.

Apoptosis induced by piroxicam plus cisplatin combined treatment is triggered by p21 in mesothelioma.

Baldi A, Piccolo MT, Boccellino MR, Donizetti A, Cardillo I, La Porta R, Quagliuolo L, Spugnini EP, Cordero F, Citro G, Menegozzo M, Calogero RA, Crispi S.

PLoS One. 2011;6(8):e23569. doi: 10.1371/journal.pone.0023569. Epub 2011 Aug 17.

43.

Atorvastatin modulates anti-proliferative and pro-proliferative signals in Her2/neu-positive mammary cancer.

Riganti C, Pinto H, Bolli E, Belisario DC, Calogero RA, Bosia A, Cavallo F.

Biochem Pharmacol. 2011 Nov 1;82(9):1079-89. doi: 10.1016/j.bcp.2011.07.079. Epub 2011 Jul 23.

44.

Mutant SOD1 and mitochondrial damage alter expression and splicing of genes controlling neuritogenesis in models of neurodegeneration.

Lenzken SC, Romeo V, Zolezzi F, Cordero F, Lamorte G, Bonanno D, Biancolini D, Cozzolino M, Pesaresi MG, Maracchioni A, Sanges R, Achsel T, Carrì MT, Calogero RA, Barabino SM.

Hum Mutat. 2011 Feb;32(2):168-82. doi: 10.1002/humu.21394. Epub 2011 Jan 25.

PMID:
21120952
45.

Involvement of inflammatory chemokines in survival of human monocytes fed with malarial pigment.

Giribaldi G, Prato M, Ulliers D, Gallo V, Schwarzer E, Akide-Ndunge OB, Valente E, Saviozzi S, Calogero RA, Arese P.

Infect Immun. 2010 Nov;78(11):4912-21. doi: 10.1128/IAI.00455-10. Epub 2010 Aug 23.

46.

Elevated blood lactate is associated with increased motor cortex excitability.

Coco M, Alagona G, Rapisarda G, Costanzo E, Calogero RA, Perciavalle V, Perciavalle V.

Somatosens Mot Res. 2010;27(1):1-8. doi: 10.3109/08990220903471765.

PMID:
20141404
47.

Learning from nature: pregnancy changes the expression of inflammation-related genes in patients with multiple sclerosis.

Gilli F, Lindberg RL, Valentino P, Marnetto F, Malucchi S, Sala A, Capobianco M, di Sapio A, Sperli F, Kappos L, Calogero RA, Bertolotto A.

PLoS One. 2010 Jan 29;5(1):e8962. doi: 10.1371/journal.pone.0008962.

48.

Attentional processes and blood lactate levels.

Coco M, Di Corrado D, Calogero RA, Perciavalle V, Maci T, Perciavalle V.

Brain Res. 2009 Dec 11;1302:205-11. doi: 10.1016/j.brainres.2009.09.032. Epub 2009 Sep 16.

PMID:
19765561
49.

Global gene expression profiling of human pleural mesotheliomas: identification of matrix metalloproteinase 14 (MMP-14) as potential tumour target.

Crispi S, Calogero RA, Santini M, Mellone P, Vincenzi B, Citro G, Vicidomini G, Fasano S, Meccariello R, Cobellis G, Menegozzo S, Pierantoni R, Facciolo F, Baldi A, Menegozzo M.

PLoS One. 2009 Sep 15;4(9):e7016. doi: 10.1371/journal.pone.0007016.

50.

AP-2alpha regulates migration of GN-11 neurons via a specific genetic programme involving the Axl receptor tyrosine kinase.

Orso F, Jäger R, Calogero RA, Schorle H, Sismondi P, De Bortoli M, Taverna D.

BMC Biol. 2009 May 22;7:25. doi: 10.1186/1741-7007-7-25.

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