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Items: 26

1.

Metatranscriptomic and metagenomic description of the bacterial nitrogen metabolism in waste water wet oxidation effluents.

Crovadore J, Soljan V, Calmin G, Chablais R, Cochard B, Lefort F.

Heliyon. 2017 Oct 18;3(10):e00427. doi: 10.1016/j.heliyon.2017.e00427. eCollection 2017 Oct.

2.

Metagenomes and Metatranscriptomes of Activated Sludge from a Sewage Plant, with or without Aerobic Granule Enrichment.

Crovadore J, Soljan V, Calmin G, Chablais R, Cochard B, Lefort F.

Genome Announc. 2017 May 25;5(21). pii: e00372-17. doi: 10.1128/genomeA.00372-17.

3.

Metagenome-Assembled Genome Sequence of Rhodopseudomonas palustris Strain ELI 1980, Commercialized as a Biostimulant.

Crovadore J, Xu S, Chablais R, Cochard B, Lukito D, Calmin G, Lefort F.

Genome Announc. 2017 May 4;5(18). pii: e00221-17. doi: 10.1128/genomeA.00221-17.

4.

Whole-Genome Sequence of Pseudomonas graminis Strain UASWS1507, a Potential Biological Control Agent and Biofertilizer Isolated in Switzerland.

Crovadore J, Calmin G, Chablais R, Cochard B, Schulz T, Lefort F.

Genome Announc. 2016 Oct 6;4(5). pii: e01096-16. doi: 10.1128/genomeA.01096-16.

5.

Whole-Genome Sequence of Bradyrhizobium elkanii Strain UASWS1016, a Potential Symbiotic Biofertilizer for Agriculture.

Crovadore J, Calmin G, Chablais R, Cochard B, Schulz T, Lefort F.

Genome Announc. 2016 Oct 6;4(5). pii: e01095-16. doi: 10.1128/genomeA.01095-16.

6.

Whole-Genome Sequence of Mesorhizobium hungaricum sp. nov. Strain UASWS1009, a Potential Resource for Agricultural and Environmental Uses.

Crovadore J, Cochard B, Calmin G, Chablais R, Schulz T, Lefort F.

Genome Announc. 2016 Oct 13;4(5). pii: e01158-16. doi: 10.1128/genomeA.01158-16.

7.

Whole-Genome Sequence of Pseudomonas xanthomarina Strain UASWS0955, a Potential Biological Agent for Agricultural and Environmental Uses.

Crovadore J, Cochard B, Calmin G, Chablais R, Schulz T, Lefort F.

Genome Announc. 2016 Oct 13;4(5). pii: e01136-16. doi: 10.1128/genomeA.01136-16.

8.

Whole-Genome Sequence of Enteractinococcus helveticum sp. nov. Strain UASWS1574 Isolated from Industrial Used Waters.

Crovadore J, Calmin G, Chablais R, Cochard B, Lefort F.

Genome Announc. 2016 Jul 28;4(4). pii: e00756-16. doi: 10.1128/genomeA.00756-16.

9.

Whole-Genome Sequences of Seven Strains of Bacillus cereus Isolated from Foodstuff or Poisoning Incidents.

Crovadore J, Calmin G, Tonacini J, Chablais R, Schnyder B, Messelhäußer U, Lefort F.

Genome Announc. 2016 Jun 9;4(3). pii: e00435-16. doi: 10.1128/genomeA.00435-16.

10.

Whole-Genome Sequence of Bradyrhizobium elkanii Strain UASWS1015, a Highly Ammonia-Tolerant Nitrifying Bacterium.

Crovadore J, Calmin G, Cochard B, Chablais R, Lefort F.

Genome Announc. 2016 Mar 10;4(2). pii: e00111-16. doi: 10.1128/genomeA.00111-16.

11.

Gnomoniopsis smithogilvyi causes chestnut canker symptoms in Castanea sativa shoots in Switzerland.

Pasche S, Calmin G, Auderset G, Crovadore J, Pelleteret P, Mauch-Mani B, Barja F, Paul B, Jermini M, Lefort F.

Fungal Genet Biol. 2016 Feb;87:9-21. doi: 10.1016/j.fgb.2016.01.002. Epub 2016 Jan 5.

PMID:
26768710
12.

Whole-Genome Sequence of Pseudomonas putida Strain UASWS0946, a Highly Ammonia-Tolerant Nitrifying Bacterium Isolated from Sewage Sludge Aerobic Granules.

Crovadore J, Calmin G, Cochard B, Chablais R, Grizard D, Berthon JY, Lefort F.

Genome Announc. 2015 Oct 8;3(5). pii: e01153-15. doi: 10.1128/genomeA.01153-15.

13.

Whole-Genome Sequences of 15 Strains of Staphylococcus aureus subsp. aureus Isolated from Foodstuff and Human Clinical Samples.

Crovadore J, Calmin G, Tonacini J, Chablais R, Baumgartner A, Schnyder B, Hodille E, Lefort F.

Genome Announc. 2015 Jun 25;3(3). pii: e00684-15. doi: 10.1128/genomeA.00684-15.

14.

Whole-Genome Shotgun Sequence of Arthrospira platensis Strain Paraca, a Cultivated and Edible Cyanobacterium.

Lefort F, Calmin G, Crovadore J, Falquet J, Hurni JP, Osteras M, Haldemann F, Farinelli L.

Genome Announc. 2014 Aug 7;2(4). pii: e00751-14. doi: 10.1128/genomeA.00751-14.

15.

Whole-Genome Shotgun Sequence of Bacillus amyloliquefaciens Strain UASWS BA1, a Bacterium Antagonistic to Plant Pathogenic Fungi.

Lefort F, Calmin G, Pelleteret P, Farinelli L, Osteras M, Crovadore J.

Genome Announc. 2014 Feb 6;2(1). pii: e00016-14. doi: 10.1128/genomeA.00016-14.

16.

Whole-Genome Shotgun Sequence of Pseudomonas viridiflava, a Bacterium Species Pathogenic to Ararabidopsis thaliana.

Lefort F, Calmin G, Crovadore J, Osteras M, Farinelli L.

Genome Announc. 2013 Jan;1(1). pii: e00116-12. doi: 10.1128/genomeA.00116-12. Epub 2013 Jan 24.

17.

Green fluorescent protein (GFP) as a reporter gene for the plant pathogenic oomycete Phytophthora ramorum.

Riedel M, Calmin G, Belbahri L, Lefort F, Götz M, Wagner S, Werres S.

J Eukaryot Microbiol. 2009 Mar-Apr;56(2):130-5. doi: 10.1111/j.1550-7408.2008.00376.x.

PMID:
19457053
18.

Pythium recalcitrans sp. nov. revealed by multigene phylogenetic analysis.

Moralejo E, Clemente A, Descals E, Belbahri L, Calmin G, Lefort F, Spies CF, McLeod A.

Mycologia. 2008 Mar-Apr;100(2):310-9.

PMID:
18592905
19.

Multi-loci sequence typing (MLST) for two lacto-acid bacteria (LAB) species: Pediococcus parvulus and P. damnosus.

Calmin G, Lefort F, Belbahri L.

Mol Biotechnol. 2008 Oct;40(2):170-9. doi: 10.1007/s12033-008-9073-4. Epub 2008 Jun 10.

PMID:
18543129
20.

Intraspecific and within-isolate sequence variation in the ITS rRNA gene region of Pythium mercuriale sp. nov. (Pythiaceae).

Belbahri L, McLeod A, Paul B, Calmin G, Moralejo E, Spies CF, Botha WJ, Clemente A, Descals E, Sánchez-Hernández E, Lefort F.

FEMS Microbiol Lett. 2008 Jul;284(1):17-27. doi: 10.1111/j.1574-6968.2008.01168.x.

21.

Evolution of the cutinase gene family: evidence for lateral gene transfer of a candidate Phytophthora virulence factor.

Belbahri L, Calmin G, Mauch F, Andersson JO.

Gene. 2008 Jan 31;408(1-2):1-8. Epub 2007 Oct 23.

PMID:
18024004
22.

First Report of Pythium intermedium Causing Root Rot on Rosa canina Rootstock in France.

Metzger R, Belbahri L, Calmin G, Badin N, Lefort F.

Plant Dis. 2007 Aug;91(8):1055. doi: 10.1094/PDIS-91-8-1055B.

PMID:
30780454
23.

Phytophthora polonica, a new species isolated from declining Alnus glutinosa stands in Poland.

Belbahri L, Moralejo E, Calmin G, Oszako T, García JA, Descals E, Lefort F.

FEMS Microbiol Lett. 2006 Aug;261(2):165-74.

24.

Pythium sterilum sp. nov. isolated from Poland, Spain and France: its morphology and molecular phylogenetic position.

Belbahri L, Calmin G, Sanchez-Hernandez E, Oszako T, Lefort F.

FEMS Microbiol Lett. 2006 Feb;255(2):209-14.

25.
26.

Phylogenetic analysis and real time PCR detection of a presumbably undescribed Peronospora species on sweet basil and sage.

Belbahri L, Calmin G, Pawlowski J, Lefort F.

Mycol Res. 2005 Nov;109(Pt 11):1276-87.

PMID:
16279421

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