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Selective auxin agonists induce specific AUX/IAA protein degradation to modulate plant development.

Vain T, Raggi S, Ferro N, Barange DK, Kieffer M, Ma Q, Doyle SM, Thelander M, Pařízková B, Novák O, Ismail A, Enquist PA, Rigal A, Łangowska M, Ramans Harborough S, Zhang Y, Ljung K, Callis J, Almqvist F, Kepinski S, Estelle M, Pauwels L, Robert S.

Proc Natl Acad Sci U S A. 2019 Mar 26;116(13):6463-6472. doi: 10.1073/pnas.1809037116. Epub 2019 Mar 8.


Identification and biochemical characterization of the fructokinase gene family in Arabidopsis thaliana.

Riggs JW, Cavales PC, Chapiro SM, Callis J.

BMC Plant Biol. 2017 Apr 26;17(1):83. doi: 10.1186/s12870-017-1031-5.


Arabidopsis fructokinase-like protein associations are regulated by ATP.

Riggs JW, Callis J.

Biochem J. 2017 May 10;474(11):1789-1801. doi: 10.1042/BCJ20161077.


Control of Amino Acid Homeostasis by a Ubiquitin Ligase-Coactivator Protein Complex.

Guerra D, Chapiro SM, Pratelli R, Yu S, Jia W, Leary J, Pilot G, Callis J.

J Biol Chem. 2017 Mar 3;292(9):3827-3840. doi: 10.1074/jbc.M116.766469. Epub 2017 Jan 18.


Identification of the Plant Ribokinase and Discovery of a Role for Arabidopsis Ribokinase in Nucleoside Metabolism.

Riggs JW, Rockwell NC, Cavales PC, Callis J.

J Biol Chem. 2016 Oct 21;291(43):22572-22582. Epub 2016 Sep 6.


The RING E3 Ligase KEEP ON GOING Modulates JASMONATE ZIM-DOMAIN12 Stability.

Pauwels L, Ritter A, Goossens J, Durand AN, Liu H, Gu Y, Geerinck J, Boter M, Vanden Bossche R, De Clercq R, Van Leene J, Gevaert K, De Jaeger G, Solano R, Stone S, Innes RW, Callis J, Goossens A.

Plant Physiol. 2015 Oct;169(2):1405-17. doi: 10.1104/pp.15.00479. Epub 2015 Aug 28.


Lysine Residues Are Not Required for Proteasome-Mediated Proteolysis of the Auxin/Indole Acidic Acid Protein IAA1.

Gilkerson J, Kelley DR, Tam R, Estelle M, Callis J.

Plant Physiol. 2015 Jun;168(2):708-20. doi: 10.1104/pp.15.00402. Epub 2015 Apr 17.


The ubiquitination machinery of the ubiquitin system.

Callis J.

Arabidopsis Book. 2014 Oct 6;12:e0174. doi: 10.1199/tab.0174. eCollection 2014.


Functional conservation between mammalian MGRN1 and plant LOG2 ubiquitin ligases.

Guerra DD, Pratelli R, Kraft E, Callis J, Pilot G.

FEBS Lett. 2013 Nov 1;587(21):3400-5. doi: 10.1016/j.febslet.2013.08.045. Epub 2013 Sep 10.


IRT1 degradation factor1, a ring E3 ubiquitin ligase, regulates the degradation of iron-regulated transporter1 in Arabidopsis.

Shin LJ, Lo JC, Chen GH, Callis J, Fu H, Yeh KC.

Plant Cell. 2013 Aug;25(8):3039-51. doi: 10.1105/tpc.113.115212. Epub 2013 Aug 30.


ABA and the ubiquitin E3 ligase KEEP ON GOING affect proteolysis of the Arabidopsis thaliana transcription factors ABF1 and ABF3.

Chen YT, Liu H, Stone S, Callis J.

Plant J. 2013 Sep;75(6):965-76. doi: 10.1111/tpj.12259. Epub 2013 Jul 19.


Recovery of DDB1a (damaged DNA binding protein1a) in a screen to identify novel RUB-modified proteins in Arabidopsis thaliana.

Hotton SK, Castro MF, Eigenheer RA, Callis J.

Mol Plant. 2012 Sep;5(5):1163-6. doi: 10.1093/mp/sss077. Epub 2012 Aug 14. No abstract available.


The plastid-localized pfkB-type carbohydrate kinases FRUCTOKINASE-LIKE 1 and 2 are essential for growth and development of Arabidopsis thaliana.

Gilkerson J, Perez-Ruiz JM, Chory J, Callis J.

BMC Plant Biol. 2012 Jul 8;12:102. doi: 10.1186/1471-2229-12-102.


Ubiquitin on the move: the ubiquitin modification system plays diverse roles in the regulation of endoplasmic reticulum- and plasma membrane-localized proteins.

Guerra DD, Callis J.

Plant Physiol. 2012 Sep;160(1):56-64. doi: 10.1104/pp.112.199869. Epub 2012 Jun 22. Review. No abstract available.


The ubiquitin E3 ligase LOSS OF GDU2 is required for GLUTAMINE DUMPER1-induced amino acid secretion in Arabidopsis.

Pratelli R, Guerra DD, Yu S, Wogulis M, Kraft E, Frommer WB, Callis J, Pilot G.

Plant Physiol. 2012 Apr;158(4):1628-42. doi: 10.1104/pp.111.191965. Epub 2012 Jan 30. Erratum in: Plant Physiol. 2014 Sep;166(1):451.


AXR1-ECR1 and AXL1-ECR1 heterodimeric RUB-activating enzymes diverge in function in Arabidopsis thaliana.

Hotton SK, Eigenheer RA, Castro MF, Bostick M, Callis J.

Plant Mol Biol. 2011 Mar;75(4-5):515-26. doi: 10.1007/s11103-011-9750-8. Epub 2011 Feb 11.


ATL9, a RING zinc finger protein with E3 ubiquitin ligase activity implicated in chitin- and NADPH oxidase-mediated defense responses.

Berrocal-Lobo M, Stone S, Yang X, Antico J, Callis J, Ramonell KM, Somerville S.

PLoS One. 2010 Dec 23;5(12):e14426. doi: 10.1371/journal.pone.0014426.


BRIZ1 and BRIZ2 proteins form a heteromeric E3 ligase complex required for seed germination and post-germination growth in Arabidopsis thaliana.

Hsia MM, Callis J.

J Biol Chem. 2010 Nov 19;285(47):37070-81. doi: 10.1074/jbc.M110.168021. Epub 2010 Sep 1.


Simultaneous velocity and pressure measurements using luminescent microspheres.

Kimura F, McCann J, Khalil GE, Dabiri D, Xia Y, Callis JB.

Rev Sci Instrum. 2010 Jun;81(6):064101. doi: 10.1063/1.3422324.


Isolation and characterization of cul1-7, a recessive allele of CULLIN1 that disrupts SCF function at the C terminus of CUL1 in Arabidopsis thaliana.

Gilkerson J, Hu J, Brown J, Jones A, Sun TP, Callis J.

Genetics. 2009 Mar;181(3):945-63. doi: 10.1534/genetics.108.097675. Epub 2008 Dec 29.


Synthesis of polystyrene beads loaded with dual luminophors for self-referenced oxygen sensing.

Im SH, Khalil GE, Callis J, Ahn BH, Gouterman M, Xia Y.

Talanta. 2005 Sep 15;67(3):492-7. doi: 10.1016/j.talanta.2005.06.046. Epub 2005 Aug 1.


Development and characterization of fast responding pressure sensitive microspheres.

Kimura F, Rodriguez M, McCann J, Carlson B, Dabiri D, Khalil GE, Callis JB, Xia Y, Gouterman M.

Rev Sci Instrum. 2008 Jul;79(7):074102. doi: 10.1063/1.2952502.


ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases.

Kraft E, Bostick M, Jacobsen SE, Callis J.

Plant J. 2008 Dec;56(5):704-15. doi: 10.1111/j.1365-313X.2008.03631.x. Epub 2008 Sep 19.


Regulation of cullin RING ligases.

Hotton SK, Callis J.

Annu Rev Plant Biol. 2008;59:467-89. doi: 10.1146/annurev.arplant.58.032806.104011. Review.


Singlet molecular oxygen by direct excitation.

Jockusch S, Turro NJ, Thompson EK, Gouterman M, Callis JB, Khalil GE.

Photochem Photobiol Sci. 2008 Feb;7(2):235-9. doi: 10.1039/b714286b. Epub 2007 Nov 30.


Degradation of the auxin response factor ARF1.

Salmon J, Ramos J, Callis J.

Plant J. 2008 Apr;54(1):118-28. Epub 2007 Dec 15.


The ubiquitin-specific protease subfamily UBP3/UBP4 is essential for pollen development and transmission in Arabidopsis.

Doelling JH, Phillips AR, Soyler-Ogretim G, Wise J, Chandler J, Callis J, Otegui MS, Vierstra RD.

Plant Physiol. 2007 Nov;145(3):801-13. Epub 2007 Sep 28.


Ubiquitin ligases mediate growth and development by promoting protein death.

Stone SL, Callis J.

Curr Opin Plant Biol. 2007 Dec;10(6):624-32. Epub 2007 Sep 11. Review.


A role for phospholipase A in auxin-regulated gene expression.

Scherer GF, Zahn M, Callis J, Jones AM.

FEBS Lett. 2007 Sep 4;581(22):4205-11. Epub 2007 Aug 3.


The SRA methyl-cytosine-binding domain links DNA and histone methylation.

Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, Callis J, Jacobsen SE.

Curr Biol. 2007 Feb 20;17(4):379-84. Epub 2007 Jan 18.


Ubiquitin, hormones and biotic stress in plants.

Dreher K, Callis J.

Ann Bot. 2007 May;99(5):787-822. Epub 2007 Jan 12. Review.


KEEP ON GOING, a RING E3 ligase essential for Arabidopsis growth and development, is involved in abscisic acid signaling.

Stone SL, Williams LA, Farmer LM, Vierstra RD, Callis J.

Plant Cell. 2006 Dec;18(12):3415-28. Epub 2006 Dec 28.


The Arabidopsis Aux/IAA protein family has diversified in degradation and auxin responsiveness.

Dreher KA, Brown J, Saw RE, Callis J.

Plant Cell. 2006 Mar;18(3):699-714. Epub 2006 Feb 17.


Measurement of respiration rates of Methylobacterium extorquens AM1 cultures by use of a phosphorescence-based sensor.

Strovas TJ, Dragavon JM, Hankins TJ, Callis JB, Burgess LW, Lidstrom ME.

Appl Environ Microbiol. 2006 Feb;72(2):1692-5.


Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis.

Kraft E, Stone SL, Ma L, Su N, Gao Y, Lau OS, Deng XW, Callis J.

Plant Physiol. 2005 Dec;139(4):1597-611.


Preparation, characterization, and use of tagged ubiquitins.

Callis J, Ling R.

Methods Enzymol. 2005;399:51-64.


Plant biology: auxin action.

Callis J.

Nature. 2005 May 26;435(7041):436-7. No abstract available. Erratum in: Nature. 2005 Jun 16;435(7044):900.


Arabidopsis has two redundant Cullin3 proteins that are essential for embryo development and that interact with RBX1 and BTB proteins to form multisubunit E3 ubiquitin ligase complexes in vivo.

Figueroa P, Gusmaroli G, Serino G, Habashi J, Ma L, Shen Y, Feng S, Bostick M, Callis J, Hellmann H, Deng XW.

Plant Cell. 2005 Apr;17(4):1180-95. Epub 2005 Mar 16.


Vaccinology--an historical review.

Callis JJ.

Dev Biol (Basel). 2004;119:9-14. No abstract available.


Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis.

Stone SL, Hauksdóttir H, Troy A, Herschleb J, Kraft E, Callis J.

Plant Physiol. 2005 Jan;137(1):13-30.


Related to ubiquitin 1 and 2 are redundant and essential and regulate vegetative growth, auxin signaling, and ethylene production in Arabidopsis.

Bostick M, Lochhead SR, Honda A, Palmer S, Callis J.

Plant Cell. 2004 Sep;16(9):2418-32. Epub 2004 Aug 19.


Regulation of ATP/ADP in pancreatic islets.

Sweet IR, Cook DL, DeJulio E, Wallen AR, Khalil G, Callis J, Reems J.

Diabetes. 2004 Feb;53(2):401-9.


Saccharomyces cerevisiae ubiquitin-like protein Rub1 conjugates to cullin proteins Rtt101 and Cul3 in vivo.

Laplaza JM, Bostick M, Scholes DT, Curcio MJ, Callis J.

Biochem J. 2004 Jan 15;377(Pt 2):459-67.


Acceleration of Aux/IAA proteolysis is specific for auxin and independent of AXR1.

Zenser N, Dreher KA, Edwards SR, Callis J.

Plant J. 2003 Aug;35(3):285-94.


Continuous measurement of oxygen consumption by pancreatic islets.

Sweet IR, Khalil G, Wallen AR, Steedman M, Schenkman KA, Reems JA, Kahn SE, Callis JB.

Diabetes Technol Ther. 2002;4(5):661-72.


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