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Items: 17


OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs.

Sethna Z, Elhanati Y, Callan CG, Walczak AM, Mora T.

Bioinformatics. 2019 Sep 1;35(17):2974-2981. doi: 10.1093/bioinformatics/btz035.


Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombination.

Elhanati Y, Sethna Z, Callan CG Jr, Mora T, Walczak AM.

Immunol Rev. 2018 Jul;284(1):167-179. doi: 10.1111/imr.12665. Review.


Insights into immune system development and function from mouse T-cell repertoires.

Sethna Z, Elhanati Y, Dudgeon CS, Callan CG Jr, Levine AJ, Mora T, Walczak AM.

Proc Natl Acad Sci U S A. 2017 Feb 28;114(9):2253-2258. doi: 10.1073/pnas.1700241114. Epub 2017 Feb 14. Erratum in: Proc Natl Acad Sci U S A. 2017 Mar 28;114(13):E2798. Dudgeon, Chrissy S [corrected to Dudgeon, Crissy R].


Inferring processes underlying B-cell repertoire diversity.

Elhanati Y, Sethna Z, Marcou Q, Callan CG Jr, Mora T, Walczak AM.

Philos Trans R Soc Lond B Biol Sci. 2015 Sep 5;370(1676). pii: 20140243. doi: 10.1098/rstb.2014.0243.


Quantifying selection in immune receptor repertoires.

Elhanati Y, Murugan A, Callan CG Jr, Mora T, Walczak AM.

Proc Natl Acad Sci U S A. 2014 Jul 8;111(27):9875-80. doi: 10.1073/pnas.1409572111. Epub 2014 Jun 18.


Statistical inference of the generation probability of T-cell receptors from sequence repertoires.

Murugan A, Mora T, Walczak AM, Callan CG Jr.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16161-6. doi: 10.1073/pnas.1212755109. Epub 2012 Sep 17.


Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay.

Melnikov A, Murugan A, Zhang X, Tesileanu T, Wang L, Rogov P, Feizi S, Gnirke A, Callan CG Jr, Kinney JB, Kellis M, Lander ES, Mikkelsen TS.

Nat Biotechnol. 2012 Feb 26;30(3):271-7. doi: 10.1038/nbt.2137.


Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence.

Kinney JB, Murugan A, Callan CG Jr, Cox EC.

Proc Natl Acad Sci U S A. 2010 May 18;107(20):9158-63. doi: 10.1073/pnas.1004290107. Epub 2010 May 3.


Maximum entropy models for antibody diversity.

Mora T, Walczak AM, Bialek W, Callan CG Jr.

Proc Natl Acad Sci U S A. 2010 Mar 23;107(12):5405-10. doi: 10.1073/pnas.1001705107. Epub 2010 Mar 8.


Information capacity of genetic regulatory elements.

Tkacik G, Callan CG Jr, Bialek W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jul;78(1 Pt 1):011910. Epub 2008 Jul 21.


Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites.

Mustonen V, Kinney J, Callan CG Jr, Lässig M.

Proc Natl Acad Sci U S A. 2008 Aug 26;105(34):12376-81. doi: 10.1073/pnas.0805909105. Epub 2008 Aug 22.


Information flow and optimization in transcriptional regulation.

Tkacik G, Callan CG Jr, Bialek W.

Proc Natl Acad Sci U S A. 2008 Aug 26;105(34):12265-70. doi: 10.1073/pnas.0806077105. Epub 2008 Aug 21.


Precise physical models of protein-DNA interaction from high-throughput data.

Kinney JB, Tkacik G, Callan CG Jr.

Proc Natl Acad Sci U S A. 2007 Jan 9;104(2):501-6. Epub 2006 Dec 29.


Evolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coli.

Brown CT, Callan CG Jr.

Proc Natl Acad Sci U S A. 2004 Feb 24;101(8):2404-9.


Field Theories for Learning Probability Distributions.

Bialek W, Callan CG, Strong SP.

Phys Rev Lett. 1996 Dec 2;77(23):4693-4697. No abstract available.


Exact c=1 boundary conformal field theories.

Callan CG, Klebanov IR.

Phys Rev Lett. 1994 Mar 28;72(13):1968-1971. No abstract available.


Evanescent black holes.

Callan CG Jr, Giddings SB, Harvey JA, Strominger A.

Phys Rev D Part Fields. 1992 Feb 15;45(4):1005-1009. No abstract available.


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