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Antimicrobial Resistance Prediction for Gram-Negative Bacteria via Game Theory-Based Feature Evaluation.

Chowdhury AS, Call DR, Broschat SL.

Sci Rep. 2019 Oct 9;9(1):14487. doi: 10.1038/s41598-019-50686-z.


Distribution, diversity, virulence genotypes and antibiotic resistance for Salmonella isolated from a Brazilian pork production chain.

Viana C, Sereno MJ, Pegoraro K, Yamatogi RS, Call DR, Dos Santos Bersot L, Nero LA.

Int J Food Microbiol. 2019 Nov 16;310:108310. doi: 10.1016/j.ijfoodmicro.2019.108310. Epub 2019 Aug 24.


Dairy farm soil presents distinct microbiota and varied prevalence of antibiotic resistance across housing areas.

Liu J, Zhao Z, Avillan JJ, Call DR, Davis M, Sischo WM, Zhang A.

Environ Pollut. 2019 Nov;254(Pt B):113058. doi: 10.1016/j.envpol.2019.113058. Epub 2019 Aug 14.


Whole-genome sequencing reveals Listeria monocytogenes diversity and allows identification of long-term persistent strains in Brazil.

Camargo AC, Moura A, Avillan J, Herman N, McFarland AP, Sreevatsan S, Call DR, Woodward JJ, Lecuit M, Nero LA.

Environ Microbiol. 2019 Jun 28. doi: 10.1111/1462-2920.14726. [Epub ahead of print]


Spatial relationships between small-holder farms coupled with livestock management practices are correlated with the distribution of antibiotic resistant bacteria in northern Tanzania.

Rosenkrantz L, Amram O, Caudell MA, Schuurman N, Call DR.

One Health. 2019 Jun 12;8:100097. doi: 10.1016/j.onehlt.2019.100097. eCollection 2019 Dec.


β-lactam resistance genes in bacteriophage and bacterial DNA from wastewater, river water, and irrigation water in Washington State.

Zhang A, Call DR, Besser TE, Liu J, Jones L, Wang H, Davis MA.

Water Res. 2019 Sep 15;161:335-340. doi: 10.1016/j.watres.2019.06.026. Epub 2019 Jun 11.


Responses of Acinetobacter baumannii Bound and Loose Extracellular Polymeric Substances to Hyperosmotic Agents Combined with or without Tobramycin: An Atomic Force Microscopy Study.

Deliorman M, Gordesli Duatepe FP, Davenport EK, Fransson BA, Call DR, Beyenal H, Abu-Lail NI.

Langmuir. 2019 Jul 9;35(27):9071-9083. doi: 10.1021/acs.langmuir.9b01227. Epub 2019 Jun 24.


Microcin PDI Inhibits Antibiotic-Resistant Strains of Escherichia coli and Shigella through a Mechanism of Membrane Disruption and Protection by Homotrimer Self-Immunity.

Lu SY, Graça T, Avillan JJ, Zhao Z, Call DR.

Appl Environ Microbiol. 2019 May 16;85(11). pii: e00371-19. doi: 10.1128/AEM.00371-19. Print 2019 Jun 1.


Hypochlorous-Acid-Generating Electrochemical Scaffold for Treatment of Wound Biofilms.

Kiamco MM, Zmuda HM, Mohamed A, Call DR, Raval YS, Patel R, Beyenal H.

Sci Rep. 2019 Feb 25;9(1):2683. doi: 10.1038/s41598-019-38968-y.


Large-Scale Analysis of Flavobacterium psychrophilum Multilocus Sequence Typing Genotypes Recovered from North American Salmonids Indicates that both Newly Identified and Recurrent Clonal Complexes Are Associated with Disease.

Knupp C, Wiens GD, Faisal M, Call DR, Cain KD, Nicolas P, Van Vliet D, Yamashita C, Ferguson JA, Meuninck D, Hsu HM, Baker BB, Shen L, Loch TP.

Appl Environ Microbiol. 2019 Mar 6;85(6). pii: e02305-18. doi: 10.1128/AEM.02305-18. Print 2019 Mar 15.


Identification of risk factors associated with carriage of resistant Escherichia coli in three culturally diverse ethnic groups in Tanzania: a biological and socioeconomic analysis.

Caudell MA, Mair C, Subbiah M, Matthews L, Quinlan RJ, Quinlan MB, Zadoks R, Keyyu J, Call DR.

Lancet Planet Health. 2018 Nov;2(11):e489-e497. doi: 10.1016/S2542-5196(18)30225-0.


Structural and metabolic responses of Staphylococcus aureus biofilms to hyperosmotic and antibiotic stress.

Kiamco MM, Mohamed A, Reardon PN, Marean-Reardon CL, Aframehr WM, Call DR, Beyenal H, Renslow RS.

Biotechnol Bioeng. 2018 Jun;115(6):1594-1603. doi: 10.1002/bit.26572. Epub 2018 Mar 24.


Medicinal foods and beverages among Maasai agro-pastoralists in northern Tanzania.

Roulette CJ, Njau EA, Quinlan MB, Quinlan RJ, Call DR.

J Ethnopharmacol. 2018 Apr 24;216:191-202. doi: 10.1016/j.jep.2018.01.022. Epub 2018 Feb 2. Review.


Autoinducer-2 Quorum Sensing Contributes to Regulation of Microcin PDI in Escherichia coli.

Lu SY, Zhao Z, Avillan JJ, Liu J, Call DR.

Front Microbiol. 2017 Dec 22;8:2570. doi: 10.3389/fmicb.2017.02570. eCollection 2017.


Isolation of an IncP-1 plasmid harbouring mcr-1 from a chicken isolate of Citrobacter braakii in China.

Liu J, Yang Y, Li Y, Liu D, Tuo H, Wang H, Call DR, Davis M, Zhang A.

Int J Antimicrob Agents. 2018 Jun;51(6):936-940. doi: 10.1016/j.ijantimicag.2017.12.030. Epub 2018 Jan 3.


The Vibrio alginolyticus T3SS effectors, Val1686 and Val1680, induce cell rounding, apoptosis and lysis of fish epithelial cells.

Zhao Z, Liu J, Deng Y, Huang W, Ren C, Call DR, Hu C.

Virulence. 2018 Jan 1;9(1):318-330. doi: 10.1080/21505594.2017.1414134.


A two-month follow-up evaluation testing interventions to limit the emergence and spread of antimicrobial resistant bacteria among Maasai of northern Tanzania.

Roulette CJ, Caudell MA, Roulette JW, Quinlan RJ, Quinlan MB, Subbiah M, Call DR.

BMC Infect Dis. 2017 Dec 15;17(1):770. doi: 10.1186/s12879-017-2857-z.


Evidence of superficial knowledge regarding antibiotics and their use: Results of two cross-sectional surveys in an urban informal settlement in Kenya.

Omulo S, Thumbi SM, Lockwood S, Verani JR, Bigogo G, Masyongo G, Call DR.

PLoS One. 2017 Oct 2;12(10):e0185827. doi: 10.1371/journal.pone.0185827. eCollection 2017.


Listeria monocytogenes in Food-Processing Facilities, Food Contamination, and Human Listeriosis: The Brazilian Scenario.

Camargo AC, Woodward JJ, Call DR, Nero LA.

Foodborne Pathog Dis. 2017 Nov;14(11):623-636. doi: 10.1089/fpd.2016.2274. Epub 2017 Aug 2. Review.


Osmotic Compounds Enhance Antibiotic Efficacy against Acinetobacter baumannii Biofilm Communities.

Falghoush A, Beyenal H, Besser TE, Omsland A, Call DR.

Appl Environ Microbiol. 2017 Sep 15;83(19). pii: e01297-17. doi: 10.1128/AEM.01297-17. Print 2017 Oct 1.


Eradication of Pseudomonas aeruginosa biofilms and persister cells using an electrochemical scaffold and enhanced antibiotic susceptibility.

Sultana ST, Call DR, Beyenal H.

NPJ Biofilms Microbiomes. 2016 Nov 23;2:2. doi: 10.1038/s41522-016-0003-0. eCollection 2016.


The impact of fecal sample processing on prevalence estimates for antibiotic-resistant Escherichia coli.

Omulo S, Lofgren ET, Mugoh M, Alando M, Obiya J, Kipyegon K, Kikwai G, Gumbi W, Kariuki S, Call DR.

J Microbiol Methods. 2017 May;136:71-77. doi: 10.1016/j.mimet.2017.03.006. Epub 2017 Mar 18.


Load and Prevalence of Antimicrobial-Resistant Escherichia coli from Fresh Goat Meat in Arusha, Tanzania.

Mwanyika G, Call DR, Rugumisa B, Luanda C, Murutu R, Subbiah M, Buza J.

J Food Prot. 2016 Sep;79(9):1635-1641. doi: 10.4315/0362-028X.JFP-15-573.


Microcin PDI regulation and proteolytic cleavage are unique among known microcins.

Zhao Z, Orfe LH, Liu J, Lu SY, Besser TE, Call DR.

Sci Rep. 2017 Feb 16;7:42529. doi: 10.1038/srep42529.


Microbiome sharing between children, livestock and household surfaces in western Kenya.

Mosites E, Sammons M, Otiang E, Eng A, Noecker C, Manor O, Hilton S, Thumbi SM, Onyango C, Garland-Lewis G, Call DR, Njenga MK, Wasserheit JN, Zambriski JA, Walson JL, Palmer GH, Montgomery J, Borenstein E, Omore R, Rabinowitz PM.

PLoS One. 2017 Feb 2;12(2):e0171017. doi: 10.1371/journal.pone.0171017. eCollection 2017.


Antimicrobial Use and Veterinary Care among Agro-Pastoralists in Northern Tanzania.

Caudell MA, Quinlan MB, Subbiah M, Call DR, Roulette CJ, Roulette JW, Roth A, Matthews L, Quinlan RJ.

PLoS One. 2017 Jan 26;12(1):e0170328. doi: 10.1371/journal.pone.0170328. eCollection 2017.


Medical pluralism and livestock health: ethnomedical and biomedical veterinary knowledge among East African agropastoralists.

Caudell MA, Quinlan MB, Quinlan RJ, Call DR.

J Ethnobiol Ethnomed. 2017 Jan 21;13(1):7. doi: 10.1186/s13002-017-0135-1.


Hyperosmotic Agents and Antibiotics Affect Dissolved Oxygen and pH Concentration Gradients in Staphylococcus aureus Biofilms.

Kiamco MM, Atci E, Mohamed A, Call DR, Beyenal H.

Appl Environ Microbiol. 2017 Mar 2;83(6). pii: e02783-16. doi: 10.1128/AEM.02783-16. Print 2017 Mar 15.


ExsE Is a Negative Regulator for T3SS Gene Expression in Vibrio alginolyticus.

Liu J, Lu SY, Orfe LH, Ren CH, Hu CQ, Call DR, Avillan JJ, Zhao Z.

Front Cell Infect Microbiol. 2016 Dec 6;6:177. doi: 10.3389/fcimb.2016.00177. eCollection 2016.


Maltodextrin enhances biofilm elimination by electrochemical scaffold.

Sultana ST, Call DR, Beyenal H.

Sci Rep. 2016 Oct 26;6:36003. doi: 10.1038/srep36003.


Prevalence of Antibiotic-Resistant Fecal Escherichia coli Isolates from Penned Broiler and Scavenging Local Chickens in Arusha, Tanzania.

Rugumisa BT, Call DR, Mwanyika GO, Mrutu RI, Luanda CM, Lyimo BM, Subbiah M, Buza JJ.

J Food Prot. 2016 Aug;79(8):1424-9. doi: 10.4315/0362-028X.JFP-15-584.


Role of carriers in the transmission of pneumonia in bighorn sheep (Ovis canadensis).

Raghavan B, Erickson K, Kugadas A, Batra SA, Call DR, Davis MA, Foreyt WJ, Srikumaran S.

Biol Open. 2016 Jun 15;5(6):745-55. doi: 10.1242/bio.018234.


IncF Plasmids Are Commonly Carried by Antibiotic Resistant Escherichia coli Isolated from Drinking Water Sources in Northern Tanzania.

Lyimo B, Buza J, Subbiah M, Temba S, Kipasika H, Smith W, Call DR.

Int J Microbiol. 2016;2016:3103672. doi: 10.1155/2016/3103672. Epub 2016 Mar 24.


Not All Antibiotic Use Practices in Food-Animal Agriculture Afford the Same Risk.

Subbiah M, Mitchell SM, Call DR.

J Environ Qual. 2016 Mar;45(2):618-29. doi: 10.2134/jeq2015.06.0297.


Evaluation of two multi-locus sequence typing schemes for commensal Escherichia coli from dairy cattle in Washington State.

Ahmed S, Besser TE, Call DR, Weissman SJ, Jones LP, Davis MA.

J Microbiol Methods. 2016 May;124:57-61. doi: 10.1016/j.mimet.2016.03.008. Epub 2016 Mar 19.


Soil-borne reservoirs of antibiotic-resistant bacteria are established following therapeutic treatment of dairy calves.

Liu J, Zhao Z, Orfe L, Subbiah M, Call DR.

Environ Microbiol. 2016 Feb;18(2):557-64. doi: 10.1111/1462-2920.13097. Epub 2015 Dec 21.


Electrochemical scaffold generates localized, low concentration of hydrogen peroxide that inhibits bacterial pathogens and biofilms.

Sultana ST, Atci E, Babauta JT, Falghoush AM, Snekvik KR, Call DR, Beyenal H.

Sci Rep. 2015 Oct 14;5:14908. doi: 10.1038/srep14908.


Regulation of electron transfer processes affects phototrophic mat structure and activity.

Ha PT, Renslow RS, Atci E, Reardon PN, Lindemann SR, Fredrickson JK, Call DR, Beyenal H.

Front Microbiol. 2015 Sep 3;6:909. doi: 10.3389/fmicb.2015.00909. eCollection 2015.


Potential mechanisms of attenuation for rifampicin-passaged strains of Flavobacterium psychrophilum.

Gliniewicz K, Wildung M, Orfe LH, Wiens GD, Cain KD, Lahmers KK, Snekvik KR, Call DR.

BMC Microbiol. 2015 Sep 16;15:179. doi: 10.1186/s12866-015-0518-1.


Erratum to: Prevalence of tetracycline resistance genes among multi-drug resistant bacteria from selected water distribution systems in southwestern Nigeria.

Adesoji AT, Ogunjobi AA, Olatoye IO, Call DR.

Ann Clin Microbiol Antimicrob. 2015 Sep 11;14:41. doi: 10.1186/s12941-015-0099-8. No abstract available.


Genome-Wide Screening Identifies Six Genes That Are Associated with Susceptibility to Escherichia coli Microcin PDI.

Zhao Z, Eberhart LJ, Orfe LH, Lu SY, Besser TE, Call DR.

Appl Environ Microbiol. 2015 Oct;81(20):6953-63. doi: 10.1128/AEM.01704-15. Epub 2015 Jul 24.


Comparison of quantitative PCR and ELISA for detection and quantification of Flavobacterium psychrophilum in salmonid broodstock.

Long A, Call DR, Cain KD.

Dis Aquat Organ. 2015 Jul 23;115(2):139-46. doi: 10.3354/dao02881.


The mechanism of neutral red-mediated microbial electrosynthesis in Escherichia coli: menaquinone reduction.

Harrington TD, Tran VN, Mohamed A, Renslow R, Biria S, Orfe L, Call DR, Beyenal H.

Bioresour Technol. 2015 Sep;192:689-95. doi: 10.1016/j.biortech.2015.06.037. Epub 2015 Jun 12.


Vancomycin and maltodextrin affect structure and activity of Staphylococcus aureus biofilms.

Kiamco MM, Atci E, Khan QF, Mohamed A, Renslow RS, Abu-Lail N, Fransson BA, Call DR, Beyenal H.

Biotechnol Bioeng. 2015 Dec;112(12):2562-70. doi: 10.1002/bit.25681. Epub 2015 Sep 2.


Colonization of epidermal tissue by Staphylococcus aureus produces localized hypoxia and stimulates secretion of antioxidant and caspase-14 proteins.

Lone AG, Atci E, Renslow R, Beyenal H, Noh S, Fransson B, Abu-Lail N, Park JJ, Gang DR, Call DR.

Infect Immun. 2015 Aug;83(8):3026-34. doi: 10.1128/IAI.00175-15. Epub 2015 May 18.


Staphylococcus aureus induces hypoxia and cellular damage in porcine dermal explants.

Lone AG, Atci E, Renslow R, Beyenal H, Noh S, Fransson B, Abu-Lail N, Park JJ, Gang DR, Call DR.

Infect Immun. 2015 Jun;83(6):2531-41. doi: 10.1128/IAI.03075-14. Epub 2015 Apr 6.


A review of 40 years of enteric antimicrobial resistance research in Eastern Africa: what can be done better?

Omulo S, Thumbi SM, Njenga MK, Call DR.

Antimicrob Resist Infect Control. 2015 Jan 28;4:1. doi: 10.1186/s13756-014-0041-4. eCollection 2015.


Entericidin is required for a probiotic treatment (Enterobacter sp. strain C6-6) to protect trout from cold-water disease challenge.

Schubiger CB, Orfe LH, Sudheesh PS, Cain KD, Shah DH, Call DR.

Appl Environ Microbiol. 2015 Jan;81(2):658-65. doi: 10.1128/AEM.02965-14. Epub 2014 Nov 7.

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