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Items: 25

1.

Structural mapping of oligomeric intermediates in an amyloid assembly pathway.

Karamanos TK, Jackson MP, Calabrese AN, Goodchild SC, Cawood EE, Thompson GS, Kalverda AP, Hewitt EW, Radford SE.

Elife. 2019 Sep 25;8. pii: e46574. doi: 10.7554/eLife.46574.

2.

Dual Role of Ribosome-Binding Domain of NAC as a Potent Suppressor of Protein Aggregation and Aging-Related Proteinopathies.

Shen K, Gamerdinger M, Chan R, Gense K, Martin EM, Sachs N, Knight PD, Schlömer R, Calabrese AN, Stewart KL, Leiendecker L, Baghel A, Radford SE, Frydman J, Deuerling E.

Mol Cell. 2019 May 16;74(4):729-741.e7. doi: 10.1016/j.molcel.2019.03.012. Epub 2019 Apr 11.

3.

The Role of SurA PPIase Domains in Preventing Aggregation of the Outer-Membrane Proteins tOmpA and OmpT.

Humes JR, Schiffrin B, Calabrese AN, Higgins AJ, Westhead DR, Brockwell DJ, Radford SE.

J Mol Biol. 2019 Mar 15;431(6):1267-1283. doi: 10.1016/j.jmb.2019.01.032. Epub 2019 Feb 1.

PMID:
30716334
4.

Rapid Mapping of Protein Interactions Using Tag-Transfer Photocrosslinkers.

Horne JE, Walko M, Calabrese AN, Levenstein MA, Brockwell DJ, Kapur N, Wilson AJ, Radford SE.

Angew Chem Int Ed Engl. 2018 Dec 17;57(51):16688-16692. doi: 10.1002/anie.201809149. Epub 2018 Nov 21.

5.

Stability of local secondary structure determines selectivity of viral RNA chaperones.

Bravo JPK, Borodavka A, Barth A, Calabrese AN, Mojzes P, Cockburn JJB, Lamb DC, Tuma R.

Nucleic Acids Res. 2018 Sep 6;46(15):7924-7937. doi: 10.1093/nar/gky394.

6.

Mass spectrometry-enabled structural biology of membrane proteins.

Calabrese AN, Radford SE.

Methods. 2018 Sep 1;147:187-205. doi: 10.1016/j.ymeth.2018.02.020. Epub 2018 Mar 3. Review.

7.

Effects of Periplasmic Chaperones and Membrane Thickness on BamA-Catalyzed Outer-Membrane Protein Folding.

Schiffrin B, Calabrese AN, Higgins AJ, Humes JR, Ashcroft AE, Kalli AC, Brockwell DJ, Radford SE.

J Mol Biol. 2017 Nov 24;429(23):3776-3792. doi: 10.1016/j.jmb.2017.09.008. Epub 2017 Sep 15.

8.

Topological Dissection of the Membrane Transport Protein Mhp1 Derived from Cysteine Accessibility and Mass Spectrometry.

Calabrese AN, Jackson SM, Jones LN, Beckstein O, Heinkel F, Gsponer J, Sharples D, Sans M, Kokkinidou M, Pearson AR, Radford SE, Ashcroft AE, Henderson PJF.

Anal Chem. 2017 Sep 5;89(17):8844-8852. doi: 10.1021/acs.analchem.7b01310. Epub 2017 Aug 9.

9.

Investigating the Structural Compaction of Biomolecules Upon Transition to the Gas-Phase Using ESI-TWIMS-MS.

Devine PWA, Fisher HC, Calabrese AN, Whelan F, Higazi DR, Potts JR, Lowe DC, Radford SE, Ashcroft AE.

J Am Soc Mass Spectrom. 2017 Sep;28(9):1855-1862. doi: 10.1007/s13361-017-1689-9. Epub 2017 May 8.

10.

Lateral opening in the intact β-barrel assembly machinery captured by cryo-EM.

Iadanza MG, Higgins AJ, Schiffrin B, Calabrese AN, Brockwell DJ, Ashcroft AE, Radford SE, Ranson NA.

Nat Commun. 2016 Sep 30;7:12865. doi: 10.1038/ncomms12865.

11.

Skp is a multivalent chaperone of outer-membrane proteins.

Schiffrin B, Calabrese AN, Devine PWA, Harris SA, Ashcroft AE, Brockwell DJ, Radford SE.

Nat Struct Mol Biol. 2016 Sep;23(9):786-793. doi: 10.1038/nsmb.3266. Epub 2016 Jul 25.

12.

FPOP-LC-MS/MS Suggests Differences in Interaction Sites of Amphipols and Detergents with Outer Membrane Proteins.

Watkinson TG, Calabrese AN, Ault JR, Radford SE, Ashcroft AE.

J Am Soc Mass Spectrom. 2017 Jan;28(1):50-55. doi: 10.1007/s13361-016-1421-1. Epub 2016 Jun 24.

13.

Systematic analysis of the use of amphipathic polymers for studies of outer membrane proteins using mass spectrometry.

Watkinson TG, Calabrese AN, Giusti F, Zoonens M, Radford SE, Ashcroft AE.

Int J Mass Spectrom. 2015 Nov 30;391:54-61.

14.

The Amyloid Fibril-Forming Properties of the Amphibian Antimicrobial Peptide Uperin 3.5.

Calabrese AN, Liu Y, Wang T, Musgrave IF, Pukala TL, Tabor RF, Martin LL, Carver JA, Bowie JH.

Chembiochem. 2016 Feb 2;17(3):239-46. doi: 10.1002/cbic.201500518. Epub 2015 Dec 16.

PMID:
26676975
15.

The membrane-active amphibian peptide caerin 1.8 inhibits fibril formation of amyloid β1-42.

Liu Y, Wang T, Calabrese AN, Carver JA, Cummins SF, Bowie JH.

Peptides. 2015 Nov;73:1-6. doi: 10.1016/j.peptides.2015.08.004. Epub 2015 Aug 11.

PMID:
26275335
16.

Using hydroxyl radical footprinting to explore the free energy landscape of protein folding.

Calabrese AN, Ault JR, Radford SE, Ashcroft AE.

Methods. 2015 Nov 1;89:38-44. doi: 10.1016/j.ymeth.2015.02.018. Epub 2015 Mar 5.

17.

Amphipols outperform dodecylmaltoside micelles in stabilizing membrane protein structure in the gas phase.

Calabrese AN, Watkinson TG, Henderson PJ, Radford SE, Ashcroft AE.

Anal Chem. 2015 Jan 20;87(2):1118-26. doi: 10.1021/ac5037022. Epub 2014 Dec 30.

18.

Structural analysis of calmodulin binding by nNOS inhibitory amphibian peptides.

Calabrese AN, Bowie JH, Pukala TL.

Biochemistry. 2015 Jan 20;54(2):567-76. doi: 10.1021/bi5004124. Epub 2014 Dec 30.

PMID:
25436860
19.

Gallic acid interacts with α-synuclein to prevent the structural collapse necessary for its aggregation.

Liu Y, Carver JA, Calabrese AN, Pukala TL.

Biochim Biophys Acta. 2014 Sep;1844(9):1481-5. doi: 10.1016/j.bbapap.2014.04.013. Epub 2014 Apr 25.

PMID:
24769497
20.

Synthesis, characterization and applications of a perdeuterated amphipol.

Giusti F, Rieger J, Catoire LJ, Qian S, Calabrese AN, Watkinson TG, Casiraghi M, Radford SE, Ashcroft AE, Popot JL.

J Membr Biol. 2014 Oct;247(9-10):909-24. doi: 10.1007/s00232-014-9656-x. Epub 2014 Mar 21.

PMID:
24652511
21.

Negative ion fragmentations of disulfide-containing cross-linking reagents are competitive with aspartic acid side-chain-induced cleavages.

Calabrese AN, Wang T, Bowie JH, Pukala TL.

Rapid Commun Mass Spectrom. 2013 Jan 15;27(1):238-48. doi: 10.1002/rcm.6445.

PMID:
23239338
22.

Structural and activity changes in three bioactive anuran peptides when Asp is replaced by isoAsp.

Calabrese AN, Markulic K, Musgrave IF, Guo H, Zhang L, Bowie JH.

Peptides. 2012 Dec;38(2):427-36. doi: 10.1016/j.peptides.2012.10.001. Epub 2012 Oct 13.

PMID:
23069634
23.

Backbone fragmentations of [M-H]- anions from peptides. Reinvestigation of the mechanism of the beta prime cleavage.

Wang T, Tran TT, Calabrese AN, Bowie JH.

Rapid Commun Mass Spectrom. 2012 Aug 30;26(16):1832-40. doi: 10.1002/rcm.6297.

PMID:
22777785
24.

A negative ion mass spectrometry approach to identify cross-linked peptides utilizing characteristic disulfide fragmentations.

Calabrese AN, Good NJ, Wang T, He J, Bowie JH, Pukala TL.

J Am Soc Mass Spectrom. 2012 Aug;23(8):1364-75. doi: 10.1007/s13361-012-0407-x. Epub 2012 May 30.

PMID:
22644737
25.

Histidine-containing host-defence skin peptides of anurans bind Cu2+. An electrospray ionisation mass spectrometry and computational modelling study.

Wang T, Andreazza HJ, Pukala TL, Sherman PJ, Calabrese AN, Bowie JH.

Rapid Commun Mass Spectrom. 2011 May 15;25(9):1209-21. doi: 10.1002/rcm.4981.

PMID:
21488120

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