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Items: 8

1.

Phylogenomic analysis of gastroenteritis-associated Clostridium perfringens in England and Wales over a 7-year period indicates distribution of clonal toxigenic strains in multiple outbreaks and extensive involvement of enterotoxin-encoding (CPE) plasmids.

Kiu R, Caim S, Painset A, Pickard D, Swift C, Dougan G, Mather AE, Amar C, Hall LJ.

Microb Genom. 2019 Sep 25. doi: 10.1099/mgen.0.000297. [Epub ahead of print] No abstract available.

2.

Streaming histogram sketching for rapid microbiome analytics.

Rowe WP, Carrieri AP, Alcon-Giner C, Caim S, Shaw A, Sim K, Kroll JS, Hall LJ, Pyzer-Knapp EO, Winn MD.

Microbiome. 2019 Mar 16;7(1):40. doi: 10.1186/s40168-019-0653-2.

3.

Antibiotics induce sustained dysregulation of intestinal T cell immunity by perturbing macrophage homeostasis.

Scott NA, Andrusaite A, Andersen P, Lawson M, Alcon-Giner C, Leclaire C, Caim S, Le Gall G, Shaw T, Connolly JPR, Roe AJ, Wessel H, Bravo-Blas A, Thomson CA, Kästele V, Wang P, Peterson DA, Bancroft A, Li X, Grencis R, Mowat AM, Hall LJ, Travis MA, Milling SWF, Mann ER.

Sci Transl Med. 2018 Oct 24;10(464). pii: eaao4755. doi: 10.1126/scitranslmed.aao4755.

4.

Leveraging multiple transcriptome assembly methods for improved gene structure annotation.

Venturini L, Caim S, Kaithakottil GG, Mapleson DL, Swarbreck D.

Gigascience. 2018 Aug 1;7(8). doi: 10.1093/gigascience/giy093.

5.

Probing Genomic Aspects of the Multi-Host Pathogen Clostridium perfringens Reveals Significant Pangenome Diversity, and a Diverse Array of Virulence Factors.

Kiu R, Caim S, Alexander S, Pachori P, Hall LJ.

Front Microbiol. 2017 Dec 12;8:2485. doi: 10.3389/fmicb.2017.02485. eCollection 2017.

6.

Optimisation of 16S rRNA gut microbiota profiling of extremely low birth weight infants.

Alcon-Giner C, Caim S, Mitra S, Ketskemety J, Wegmann U, Wain J, Belteki G, Clarke P, Hall LJ.

BMC Genomics. 2017 Nov 2;18(1):841. doi: 10.1186/s12864-017-4229-x.

7.

Preterm Infant-Associated Clostridium tertium, Clostridium cadaveris, and Clostridium paraputrificum Strains: Genomic and Evolutionary Insights.

Kiu R, Caim S, Alcon-Giner C, Belteki G, Clarke P, Pickard D, Dougan G, Hall LJ.

Genome Biol Evol. 2017 Oct 1;9(10):2707-2714. doi: 10.1093/gbe/evx210.

8.

Draft genomes of 12 host-adapted and environmental isolates of Pseudomonas aeruginosa and their positions in the core genome phylogeny.

Stewart L, Ford A, Sangal V, Jeukens J, Boyle B, Kukavica-Ibrulj I, Caim S, Crossman L, Hoskisson PA, Levesque R, Tucker NP.

Pathog Dis. 2014 Jun;71(1):20-5. doi: 10.1111/2049-632X.12107. Epub 2013 Dec 16.

PMID:
24167005

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