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Items: 49

1.

Similarity regression predicts evolution of transcription factor sequence specificity.

Lambert SA, Yang AWH, Sasse A, Cowley G, Albu M, Caddick MX, Morris QD, Weirauch MT, Hughes TR.

Nat Genet. 2019 Jun;51(6):981-989. doi: 10.1038/s41588-019-0411-1. Epub 2019 May 27.

PMID:
31133749
2.

The role of the GATA transcription factor AreB in regulation of nitrogen and carbon metabolism in Aspergillus nidulans.

Chudzicka-Ormaniec P, Macios M, Koper M, Weedall GD, Caddick MX, Weglenski P, Dzikowska A.

FEMS Microbiol Lett. 2019 Mar 1;366(6). pii: fnz066. doi: 10.1093/femsle/fnz066.

3.

Current challenges of research on filamentous fungi in relation to human welfare and a sustainable bio-economy: a white paper.

Meyer V, Andersen MR, Brakhage AA, Braus GH, Caddick MX, Cairns TC, de Vries RP, Haarmann T, Hansen K, Hertz-Fowler C, Krappmann S, Mortensen UH, Peñalva MA, Ram AFJ, Head RM.

Fungal Biol Biotechnol. 2016 Aug 31;3:6. doi: 10.1186/s40694-016-0024-8. eCollection 2016.

4.

Transcriptome analysis of the filamentous fungus Aspergillus nidulans directed to the global identification of promoters.

Sibthorp C, Wu H, Cowley G, Wong PW, Palaima P, Morozov IY, Weedall GD, Caddick MX.

BMC Genomics. 2013 Dec 3;14:847. doi: 10.1186/1471-2164-14-847.

5.

RrmA regulates the stability of specific transcripts in response to both nitrogen source and oxidative stress.

Krol K, Morozov IY, Jones MG, Wyszomirski T, Weglenski P, Dzikowska A, Caddick MX.

Mol Microbiol. 2013 Sep;89(5):975-88. doi: 10.1111/mmi.12324. Epub 2013 Jul 29.

6.

Cytoplasmic mRNA 3' tagging in eukaryotes: does it spell the end?

Morozov IY, Caddick MX.

Biochem Soc Trans. 2012 Aug;40(4):810-4. doi: 10.1042/BST20120068. Review.

PMID:
22817739
7.

mRNA 3' tagging is induced by nonsense-mediated decay and promotes ribosome dissociation.

Morozov IY, Jones MG, Gould PD, Crome V, Wilson JB, Hall AJ, Rigden DJ, Caddick MX.

Mol Cell Biol. 2012 Jul;32(13):2585-95. doi: 10.1128/MCB.00316-12. Epub 2012 Apr 30.

8.

The GATA factors AREA and AREB together with the co-repressor NMRA, negatively regulate arginine catabolism in Aspergillus nidulans in response to nitrogen and carbon source.

Macios M, Caddick MX, Weglenski P, Scazzocchio C, Dzikowska A.

Fungal Genet Biol. 2012 Mar;49(3):189-98. doi: 10.1016/j.fgb.2012.01.004. Epub 2012 Jan 28.

PMID:
22300944
9.

The bZIP transcription factor MeaB mediates nitrogen metabolite repression at specific loci.

Wagner D, Schmeinck A, Mos M, Morozov IY, Caddick MX, Tudzynski B.

Eukaryot Cell. 2010 Oct;9(10):1588-601. doi: 10.1128/EC.00146-10. Epub 2010 Aug 20.

10.

Distinct roles for Caf1, Ccr4, Edc3 and CutA in the co-ordination of transcript deadenylation, decapping and P-body formation in Aspergillus nidulans.

Morozov IY, Jones MG, Spiller DG, Rigden DJ, Dattenböck C, Novotny R, Strauss J, Caddick MX.

Mol Microbiol. 2010 Apr;76(2):503-16. doi: 10.1111/j.1365-2958.2010.07118.x. Epub 2010 Mar 10.

11.

CUCU modification of mRNA promotes decapping and transcript degradation in Aspergillus nidulans.

Morozov IY, Jones MG, Razak AA, Rigden DJ, Caddick MX.

Mol Cell Biol. 2010 Jan;30(2):460-9. doi: 10.1128/MCB.00997-09. Epub 2009 Nov 9.

12.

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88.

Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, Andersen MR, Bendtsen JD, Benen JA, van den Berg M, Breestraat S, Caddick MX, Contreras R, Cornell M, Coutinho PM, Danchin EG, Debets AJ, Dekker P, van Dijck PW, van Dijk A, Dijkhuizen L, Driessen AJ, d'Enfert C, Geysens S, Goosen C, Groot GS, de Groot PW, Guillemette T, Henrissat B, Herweijer M, van den Hombergh JP, van den Hondel CA, van der Heijden RT, van der Kaaij RM, Klis FM, Kools HJ, Kubicek CP, van Kuyk PA, Lauber J, Lu X, van der Maarel MJ, Meulenberg R, Menke H, Mortimer MA, Nielsen J, Oliver SG, Olsthoorn M, Pal K, van Peij NN, Ram AF, Rinas U, Roubos JA, Sagt CM, Schmoll M, Sun J, Ussery D, Varga J, Vervecken W, van de Vondervoort PJ, Wedler H, Wösten HA, Zeng AP, van Ooyen AJ, Visser J, Stam H.

Nat Biotechnol. 2007 Feb;25(2):221-31. Epub 2007 Jan 28.

PMID:
17259976
13.

Opposing signals differentially regulate transcript stability in Aspergillus nidulans.

Caddick MX, Jones MG, van Tonder JM, Le Cordier H, Narendja F, Strauss J, Morozov IY.

Mol Microbiol. 2006 Oct;62(2):509-19.

14.

Nonsense-mediated mRNA decay mutation in Aspergillus nidulans.

Morozov IY, Negrete-Urtasun S, Tilburn J, Jansen CA, Caddick MX, Arst HN Jr.

Eukaryot Cell. 2006 Nov;5(11):1838-46. Epub 2006 Sep 8.

15.

Gene regulation in Aspergillus: From genetics to genomics.

Caddick MX, Dobson C, Morozov IY, Jones MG.

Med Mycol. 2006 Sep 1;44(Supplement_1):S13-S16. doi: 10.1080/13693780600835781.

PMID:
30408896
16.

Genetic analysis of the TOR pathway in Aspergillus nidulans.

Fitzgibbon GJ, Morozov IY, Jones MG, Caddick MX.

Eukaryot Cell. 2005 Sep;4(9):1595-8.

17.

The alc-GR system: a modified alc gene switch designed for use in plant tissue culture.

Roberts GR, Garoosi GA, Koroleva O, Ito M, Laufs P, Leader DJ, Caddick MX, Doonan JH, Tomsett AB.

Plant Physiol. 2005 Jul;138(3):1259-67.

18.

Characterization of the ethanol-inducible alc gene expression system in tomato.

Garoosi GA, Salter MG, Caddick MX, Tomsett AB.

J Exp Bot. 2005 Jun;56(416):1635-42. Epub 2005 Apr 25.

PMID:
15851414
19.

A polyketide synthase gene required for ochratoxin A biosynthesis in Aspergillus ochraceus.

O'Callaghan J, Caddick MX, Dobson AD.

Microbiology. 2003 Dec;149(Pt 12):3485-91.

PMID:
14663081
20.

Re: Watts et al. Proteins 2002;48:161-168.

Arst HN Jr, Nicholas HB Jr, Caddick MX.

Proteins. 2003 Aug 1;52(2):125-8. No abstract available.

PMID:
12833536
21.

Differential expression of cold- and diet-specific genes encoding two carp liver delta 9-acyl-CoA desaturase isoforms.

Polley SD, Tiku PE, Trueman RT, Caddick MX, Morozov IY, Cossins AR.

Am J Physiol Regul Integr Comp Physiol. 2003 Jan;284(1):R41-50. Epub 2002 Sep 12.

22.

Characterization of the ethanol-inducible alc gene-expression system in Arabidopsis thaliana.

Roslan HA, Salter MG, Wood CD, White MR, Croft KP, Robson F, Coupland G, Doonan J, Laufs P, Tomsett AB, Caddick MX.

Plant J. 2001 Oct;28(2):225-35.

23.

Characterization of nitrogen metabolite signalling in Aspergillus via the regulated degradation of areA mRNA.

Morozov IY, Galbis-Martinez M, Jones MG, Caddick MX.

Mol Microbiol. 2001 Oct;42(1):269-77.

24.

The Aspergillus nidulans GATA transcription factor gene areB encodes at least three proteins and features three classes of mutation.

Conlon H, Zadra I, Haas H, Arst HN Jr, Jones MG, Caddick MX.

Mol Microbiol. 2001 Apr;40(2):361-75.

25.

Evaluating low level sequence identities. Are Aspergillus QUTA and AROM homologous?

Nicholas HB Jr, Arst HN Jr, Caddick MX.

Eur J Biochem. 2001 Jan;268(2):414-9.

26.
27.

Thermal thresholds of lipid restructuring and delta(9)-desaturase expression in the liver of carp (Cyprinus carpio L.).

Trueman RJ, Tiku PE, Caddick MX, Cossins AR.

J Exp Biol. 2000 Feb;203(Pt 3):641-50.

28.

Specificity determinants of proteolytic processing of Aspergillus PacC transcription factor are remote from the processing site, and processing occurs in yeast if pH signalling is bypassed.

Mingot JM, Tilburn J, Diez E, Bignell E, Orejas M, Widdick DA, Sarkar S, Brown CV, Caddick MX, Espeso EA, Arst HN Jr, Peñalva MA.

Mol Cell Biol. 1999 Feb;19(2):1390-400.

30.

An ethanol inducible gene switch for plants used to manipulate carbon metabolism.

Caddick MX, Greenland AJ, Jepson I, Krause KP, Qu N, Riddell KV, Salter MG, Schuch W, Sonnewald U, Tomsett AB.

Nat Biotechnol. 1998 Feb;16(2):177-80.

PMID:
9487526
31.

Evolution of transcription-regulating proteins: caveat lector!

Arst HN Jr, Holden DW, Caddick MX.

Gene. 1997 Jul 11;173 Suppl:S1-4.

PMID:
9253382
32.
33.

Molecular characterisation of meaB, a novel gene affecting nitrogen metabolite repression in Aspergillus nidulans.

Polley SD, Caddick MX.

FEBS Lett. 1996 Jun 17;388(2-3):200-5. Erratum in: FEBS Lett 1998 Jul 10;431(1):129.

34.
35.

Regulation of gene expression by ambient pH in Aspergillus: genes expressed at acid pH.

Sarkar S, Caddick MX, Bignell E, Tilburn J, Arst HN Jr.

Biochem Soc Trans. 1996 May;24(2):360-3. Review. No abstract available. Erratum in: Biochem Soc Trans. 2004 Dec;32(Pt 6):1133.

PMID:
8736763
36.

Mutational analysis of the C-terminal region of AREA, the transcription factor mediating nitrogen metabolite repression in Aspergillus nidulans.

Platt A, Ravagnani A, Arst H Jr, Kirk D, Langdon T, Caddick MX.

Mol Gen Genet. 1996 Jan 15;250(1):106-14.

PMID:
8569680
37.

Mutational analysis reveals dispensability of the N-terminal region of the Aspergillus transcription factor mediating nitrogen metabolite repression.

Langdon T, Sheerins A, Ravagnani A, Gielkens M, Caddick MX, Arst HN Jr.

Mol Microbiol. 1995 Sep;17(5):877-88. Erratum in: Mol Microbiol 1996 Apr;20(1):239.

PMID:
8596437
38.
39.

Nitrogen regulation in fungi.

Caddick MX, Peters D, Platt A.

Antonie Van Leeuwenhoek. 1994;65(3):169-77. Review.

PMID:
7847882
40.

Nitrogen metabolite repression.

Caddick MX.

Prog Ind Microbiol. 1994;29:323-53. No abstract available.

PMID:
7765131
41.

C-terminal truncation of the transcriptional activator encoded by areA in Aspergillus nidulans results in both loss-of-function and gain-of-function phenotypes.

Stankovich M, Platt A, Caddick MX, Langdon T, Shaffer PM, Arst HN Jr.

Mol Microbiol. 1993 Jan;7(1):81-7. Erratum in: Mol Microbiol 1993 Mar;7(6):1025.

PMID:
8437521
42.

Nitrogen regulation in Aspergillus: are two fingers better than one?

Caddick MX, Arst HN Jr.

Gene. 1990 Oct 30;95(1):123-7.

PMID:
2253884
43.
44.

Aspergillus and mouse share a new class of 'zinc finger' protein.

Arst HN Jr, Kudla B, Martinez-Rossi N, Caddick MX, Sibley S, Davies RW.

Trends Genet. 1989 Sep;5(9):291. No abstract available.

PMID:
2511649
46.

Regulation of gene expression by pH of the growth medium in Aspergillus nidulans.

Caddick MX, Brownlee AG, Arst HN Jr.

Mol Gen Genet. 1986 May;203(2):346-53.

PMID:
3016485
47.

Cloning of the regulatory gene areA mediating nitrogen metabolite repression in Aspergillus nidulans.

Caddick MX, Arst HN Jr, Taylor LH, Johnson RI, Brownlee AG.

EMBO J. 1986 May;5(5):1087-90.

48.

Phosphatase regulation in Aspergillus nidulans: responses to nutritional starvation.

Caddick MX, Brownlee AG, Arst HN Jr.

Genet Res. 1986 Apr;47(2):93-102. No abstract available. Erratum in: Genet Res 1986 Aug;48(1):51.

PMID:
3011591
49.

Structural genes for phosphatases in Aspergillus nidulans.

Caddick MX, Arst HN Jr.

Genet Res. 1986 Apr;47(2):83-91. No abstract available. Erratum in: Genet Res 1987 Oct;50(2):166.

PMID:
3011590

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