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Patterns, Mechanisms and Genetics of Speciation in Reptiles and Amphibians.

Wollenberg Valero KC, Marshall JC, Bastiaans E, Caccone A, Camargo A, Morando M, Niemiller ML, Pabijan M, Russello MA, Sinervo B, Werneck FP, Sites JW; Jr, Wiens JJ, Steinfartz S.

Genes (Basel). 2019 Aug 26;10(9). pii: E646. doi: 10.3390/genes10090646. Review.


Complex interplay of evolutionary forces shaping population genomic structure of invasive Aedes albopictus in southern Europe.

Pichler V, Kotsakiozi P, Caputo B, Serini P, Caccone A, Della Torre A.

PLoS Negl Trop Dis. 2019 Aug 22;13(8):e0007554. doi: 10.1371/journal.pntd.0007554. eCollection 2019 Aug.


Spatio-temporal distribution of Spiroplasma infections in the tsetse fly (Glossina fuscipes fuscipes) in northern Uganda.

Schneider DI, Saarman N, Onyango MG, Hyseni C, Opiro R, Echodu R, O'Neill M, Bloch D, Vigneron A, Johnson TJ, Dion K, Weiss BL, Opiyo E, Caccone A, Aksoy S.

PLoS Negl Trop Dis. 2019 Aug 1;13(8):e0007340. doi: 10.1371/journal.pntd.0007340. eCollection 2019 Aug.


Genetically informed captive breeding of hybrids of an extinct species of Galapagos tortoise.

Quinzin MC, Sandoval-Castillo J, Miller JM, Beheregaray LB, Russello MA, Hunter EA, Gibbs JP, Tapia W, Villalva F, Caccone A.

Conserv Biol. 2019 Mar 22. doi: 10.1111/cobi.13319. [Epub ahead of print]


Genetic Markers of Benzimidazole Resistance among Human Hookworms (Necator americanus) in Kintampo North Municipality, Ghana.

Orr AR, Quagraine JE, Suwondo P, George S, Harrison LM, Dornas FP, Evans B, Caccone A, Humphries D, Wilson MD, Cappello M.

Am J Trop Med Hyg. 2019 Feb;100(2):351-356. doi: 10.4269/ajtmh.18-0727.


Giant tortoise genomes provide insights into longevity and age-related disease.

Quesada V, Freitas-Rodríguez S, Miller J, Pérez-Silva JG, Jiang ZF, Tapia W, Santiago-Fernández O, Campos-Iglesias D, Kuderna LFK, Quinzin M, Álvarez MG, Carrero D, Beheregaray LB, Gibbs JP, Chiari Y, Glaberman S, Ciofi C, Araujo-Voces M, Mayoral P, Arango JR, Tamargo-Gómez I, Roiz-Valle D, Pascual-Torner M, Evans BR, Edwards DL, Garrick RC, Russello MA, Poulakakis N, Gaughran SJ, Rueda DO, Bretones G, Marquès-Bonet T, White KP, Caccone A, López-Otín C.

Nat Ecol Evol. 2019 Jan;3(1):87-95. doi: 10.1038/s41559-018-0733-x. Epub 2018 Dec 3.


The population genomics of multiple tsetse fly (Glossina fuscipes fuscipes) admixture zones in Uganda.

Saarman NP, Opiro R, Hyseni C, Echodu R, Opiyo EA, Dion K, Johnson T, Aksoy S, Caccone A.

Mol Ecol. 2019 Jan;28(1):66-85. doi: 10.1111/mec.14957.


Population genomics through time provides insights into the consequences of decline and rapid demographic recovery through head-starting in a Galapagos giant tortoise.

Jensen EL, Edwards DL, Garrick RC, Miller JM, Gibbs JP, Cayot LJ, Tapia W, Caccone A, Russello MA.

Evol Appl. 2018 Aug 13;11(10):1811-1821. doi: 10.1111/eva.12682. eCollection 2018 Dec.


Editing nature: Local roots of global governance.

Kofler N, Collins JP, Kuzma J, Marris E, Esvelt K, Nelson MP, Newhouse A, Rothschild LJ, Vigliotti VS, Semenov M, Jacobsen R, Dahlman JE, Prince S, Caccone A, Brown T, Schmitz OJ.

Science. 2018 Nov 2;362(6414):527-529. doi: 10.1126/science.aat4612. Epub 2018 Nov 1. No abstract available.


Genetic Differentiation of Glossina pallidipes Tsetse Flies in Southern Kenya.

Okeyo WA, Saarman NP, Bateta R, Dion K, Mengual M, Mireji PO, Ouma C, Okoth S, Murilla G, Aksoy S, Caccone A.

Am J Trop Med Hyg. 2018 Oct;99(4):945-953. doi: 10.4269/ajtmh.18-0154.


Theory, practice, and conservation in the age of genomics: The Galápagos giant tortoise as a case study.

Gaughran SJ, Quinzin MC, Miller JM, Garrick RC, Edwards DL, Russello MA, Poulakakis N, Ciofi C, Beheregaray LB, Caccone A.

Evol Appl. 2017 Oct 23;11(7):1084-1093. doi: 10.1111/eva.12551. eCollection 2018 Aug.


Genome-Wide Assessment of Diversity and Divergence Among Extant Galapagos Giant Tortoise Species.

Miller JM, Quinzin MC, Edwards DL, Eaton DAR, Jensen EL, Russello MA, Gibbs JP, Tapia W, Rueda D, Caccone A.

J Hered. 2018 Aug 24;109(6):611-619. doi: 10.1093/jhered/esy031.


A spatial genetics approach to inform vector control of tsetse flies (Glossina fuscipes fuscipes) in Northern Uganda.

Saarman N, Burak M, Opiro R, Hyseni C, Echodu R, Dion K, Opiyo EA, Dunn AW, Amatulli G, Aksoy S, Caccone A.

Ecol Evol. 2018 May 4;8(11):5336-5354. doi: 10.1002/ece3.4050. eCollection 2018 Jun.


Urban rat races: spatial population genomics of brown rats (Rattus norvegicus) compared across multiple cities.

Combs M, Byers KA, Ghersi BM, Blum MJ, Caccone A, Costa F, Himsworth CG, Richardson JL, Munshi-South J.

Proc Biol Sci. 2018 Jun 13;285(1880). pii: 20180245. doi: 10.1098/rspb.2018.0245.


Temporal Mitogenomics of the Galapagos Giant Tortoise from Pinzón Reveals Potential Biases in Population Genetic Inference.

Jensen EL, Miller JM, Edwards DL, Garrick RC, Tapia W, Caccone A, Russello MA.

J Hered. 2018 Aug 24;109(6):631-640. doi: 10.1093/jhered/esy016.


Author Correction: Identification of Genetically Important Individuals of the Rediscovered Floreana Galápagos Giant Tortoise (Chelonoidis elephantopus) Provides Founders for Species Restoration Program.

Miller JM, Quinzin MC, Poulakakis N, Gibbs JP, Beheregaray LB, Garrick RC, Russello MA, Ciofi C, Edwards DL, Hunter EA, Tapia W, Rueda D, Carrión J, Valdivieso AA, Caccone A.

Sci Rep. 2018 Mar 12;8(1):4568. doi: 10.1038/s41598-018-22519-y.


Genetic Pedigree Analysis of the Pilot Breeding Program for the Rediscovered Galapagos Giant Tortoise from Floreana Island.

Miller JM, Quinzin MC, Scheibe EH, Ciofi C, Villalva F, Tapia W, Caccone A.

J Hered. 2018 Aug 24;109(6):620-630. doi: 10.1093/jhered/esy010.


Uncovering Genomic Regions Associated with Trypanosoma Infections in Wild Populations of the Tsetse Fly Glossina fuscipes.

Gloria-Soria A, Dunn WA, Yu X, Vigneron A, Lee KY, Li M, Weiss BL, Zhao H, Aksoy S, Caccone A.

G3 (Bethesda). 2018 Mar 2;8(3):887-897. doi: 10.1534/g3.117.300493.


Population genomics of the Asian tiger mosquito, Aedes albopictus: insights into the recent worldwide invasion.

Kotsakiozi P, Richardson JB, Pichler V, Favia G, Martins AJ, Urbanelli S, Armbruster PA, Caccone A.

Ecol Evol. 2017 Oct 24;7(23):10143-10157. doi: 10.1002/ece3.3514. eCollection 2017 Dec.


Self-righting potential and the evolution of shell shape in Galápagos tortoises.

Chiari Y, van der Meijden A, Caccone A, Claude J, Gilles B.

Sci Rep. 2017 Nov 30;7(1):15828. doi: 10.1038/s41598-017-15787-7.


Genomic insights into the ancient spread of Lyme disease across North America.

Walter KS, Carpi G, Caccone A, Diuk-Wasser MA.

Nat Ecol Evol. 2017 Oct;1(10):1569-1576. doi: 10.1038/s41559-017-0282-8. Epub 2017 Aug 28.


Temporal genetic differentiation in Glossina pallidipes tsetse fly populations in Kenya.

Okeyo WA, Saarman NP, Mengual M, Dion K, Bateta R, Mireji PO, Okoth S, Ouma JO, Ouma C, Ochieng J, Murilla G, Aksoy S, Caccone A.

Parasit Vectors. 2017 Oct 10;10(1):471. doi: 10.1186/s13071-017-2415-y.


Genomic analyses of African Trypanozoon strains to assess evolutionary relationships and identify markers for strain identification.

Richardson JB, Lee KY, Mireji P, Enyaru J, Sistrom M, Aksoy S, Zhao H, Caccone A.

PLoS Negl Trop Dis. 2017 Sep 29;11(9):e0005949. doi: 10.1371/journal.pntd.0005949. eCollection 2017 Sep.


Identification of Genetically Important Individuals of the Rediscovered Floreana Galápagos Giant Tortoise (Chelonoidis elephantopus) Provide Founders for Species Restoration Program.

Miller JM, Quinzin MC, Poulakakis N, Gibbs JP, Beheregaray LB, Garrick RC, Russello MA, Ciofi C, Edwards DL, Hunter EA, Tapia W, Rueda D, Carrión J, Valdivieso AA, Caccone A.

Sci Rep. 2017 Sep 13;7(1):11471. doi: 10.1038/s41598-017-11516-2. Erratum in: Sci Rep. 2018 Mar 12;8(1):4568.


Multiple evolutionary origins of Trypanosoma evansi in Kenya.

Kamidi CM, Saarman NP, Dion K, Mireji PO, Ouma C, Murilla G, Aksoy S, Schnaufer A, Caccone A.

PLoS Negl Trop Dis. 2017 Sep 7;11(9):e0005895. doi: 10.1371/journal.pntd.0005895. eCollection 2017 Sep.


Tracking the return of Aedes aegypti to Brazil, the major vector of the dengue, chikungunya and Zika viruses.

Kotsakiozi P, Gloria-Soria A, Caccone A, Evans B, Schama R, Martins AJ, Powell JR.

PLoS Negl Trop Dis. 2017 Jul 25;11(7):e0005653. doi: 10.1371/journal.pntd.0005653. eCollection 2017 Jul.


Genetic diversity of Glossina fuscipes fuscipes along the shores of Lake Victoria in Tanzania and Kenya: implications for management.

Manangwa O, Nkwengulila G, Ouma JO, Mramba F, Malele I, Dion K, Sistrom M, Khan F, Aksoy S, Caccone A.

Parasit Vectors. 2017 May 30;10(1):268. doi: 10.1186/s13071-017-2201-x.


Postglacial recolonization shaped the genetic diversity of the winter moth (Operophtera brumata) in Europe.

Andersen JC, Havill NP, Caccone A, Elkinton JS.

Ecol Evol. 2017 Apr 1;7(10):3312-3323. doi: 10.1002/ece3.2860. eCollection 2017 May.


Genetic diversity and population structure of the tsetse fly Glossina fuscipes fuscipes (Diptera: Glossinidae) in Northern Uganda: Implications for vector control.

Opiro R, Saarman NP, Echodu R, Opiyo EA, Dion K, Halyard A, Dunn AW, Aksoy S, Caccone A.

PLoS Negl Trop Dis. 2017 Apr 28;11(4):e0005485. doi: 10.1371/journal.pntd.0005485. eCollection 2017 Apr.


Using fine-scale spatial genetics of Norway rats to improve control efforts and reduce leptospirosis risk in urban slum environments.

Richardson JL, Burak MK, Hernandez C, Shirvell JM, Mariani C, Carvalho-Pereira TS, Pertile AC, Panti-May JA, Pedra GG, Serrano S, Taylor J, Carvalho M, Rodrigues G, Costa F, Childs JE, Ko AI, Caccone A.

Evol Appl. 2017 Feb 23;10(4):323-337. doi: 10.1111/eva.12449. eCollection 2017 Apr.


Asymmetric hybridization between non-native winter moth, Operophtera brumata (Lepidoptera: Geometridae), and native Bruce spanworm, Operophtera bruceata, in the Northeastern United States, assessed with novel microsatellites and SNPs.

Havill NP, Elkinton J, Andersen JC, Hagen SB, Broadley HJ, Boettner GJ, Caccone A.

Bull Entomol Res. 2017 Apr;107(2):241-250. doi: 10.1017/S0007485316000857. Epub 2016 Nov 23.


Babesia microti from humans and ticks hold a genomic signature of strong population structure in the United States.

Carpi G, Walter KS, Mamoun CB, Krause PJ, Kitchen A, Lepore TJ, Dwivedi A, Cornillot E, Caccone A, Diuk-Wasser MA.

BMC Genomics. 2016 Nov 7;17(1):888.


Global population divergence and admixture of the brown rat (Rattus norvegicus).

Puckett EE, Park J, Combs M, Blum MJ, Bryant JE, Caccone A, Costa F, Deinum EE, Esther A, Himsworth CG, Keightley PD, Ko A, Lundkvist Å, McElhinney LM, Morand S, Robins J, Russell J, Strand TM, Suarez O, Yon L, Munshi-South J.

Proc Biol Sci. 2016 Oct 26;283(1841). pii: 20161762.


I-HEDGE: determining the optimum complementary sets of taxa for conservation using evolutionary isolation.

Jensen EL, Mooers AØ, Caccone A, Russello MA.

PeerJ. 2016 Aug 23;4:e2350. doi: 10.7717/peerj.2350. eCollection 2016.


Vectors as Epidemiological Sentinels: Patterns of Within-Tick Borrelia burgdorferi Diversity.

Walter KS, Carpi G, Evans BR, Caccone A, Diuk-Wasser MA.

PLoS Pathog. 2016 Jul 14;12(7):e1005759. doi: 10.1371/journal.ppat.1005759. eCollection 2016 Jul.


Potential arms race in the coevolution of primates and angiosperms: brazzein sweet proteins and gorilla taste receptors.

Guevara EE, Veilleux CC, Saltonstall K, Caccone A, Mundy NI, Bradley BJ.

Am J Phys Anthropol. 2016 Sep;161(1):181-5. doi: 10.1002/ajpa.23046. Epub 2016 Jul 9.


Patterns of Genome-Wide Variation in Glossina fuscipes fuscipes Tsetse Flies from Uganda.

Gloria-Soria A, Dunn WA, Telleria EL, Evans BR, Okedi L, Echodu R, Warren WC, Montague MJ, Aksoy S, Caccone A.

G3 (Bethesda). 2016 Jun 1;6(6):1573-84. doi: 10.1534/g3.116.027235.


Evidence of temporal stability in allelic and mitochondrial haplotype diversity in populations of Glossina fuscipes fuscipes (Diptera: Glossinidae) in northern Uganda.

Opiro R, Saarman NP, Echodu R, Opiyo EA, Dion K, Halyard A, Aksoy S, Caccone A.

Parasit Vectors. 2016 May 3;9:258. doi: 10.1186/s13071-016-1522-5.


Ecological and evolutionary influences on body size and shape in the Galápagos marine iguana (Amblyrhynchus cristatus).

Chiari Y, Glaberman S, Tarroso P, Caccone A, Claude J.

Oecologia. 2016 Jul;181(3):885-94. doi: 10.1007/s00442-016-3618-1. Epub 2016 Apr 4.


Comparative genomics of drug resistance in Trypanosoma brucei rhodesiense.

Graf FE, Ludin P, Arquint C, Schmidt RS, Schaub N, Kunz Renggli C, Munday JC, Krezdorn J, Baker N, Horn D, Balmer O, Caccone A, de Koning HP, Mäser P.

Cell Mol Life Sci. 2016 Sep;73(17):3387-400. doi: 10.1007/s00018-016-2173-6. Epub 2016 Mar 14.


De Novo Genome Assembly Shows Genome Wide Similarity between Trypanosoma brucei brucei and Trypanosoma brucei rhodesiense.

Sistrom M, Evans B, Benoit J, Balmer O, Aksoy S, Caccone A.

PLoS One. 2016 Feb 24;11(2):e0147660. doi: 10.1371/journal.pone.0147660. eCollection 2016.


Ancient and modern colonization of North America by hemlock woolly adelgid, Adelges tsugae (Hemiptera: Adelgidae), an invasive insect from East Asia.

Havill NP, Shiyake S, Lamb Galloway A, Foottit RG, Yu G, Paradis A, Elkinton J, Montgomery ME, Sano M, Caccone A.

Mol Ecol. 2016 May;25(9):2065-80. doi: 10.1111/mec.13589. Epub 2016 Mar 28.


Was Frozen Mammoth or Giant Ground Sloth Served for Dinner at The Explorers Club?

Glass JR, Davis M, Walsh TJ, Sargis EJ, Caccone A.

PLoS One. 2016 Feb 3;11(2):e0146825. doi: 10.1371/journal.pone.0146825. eCollection 2016.


Whole genome sequencing shows sleeping sickness relapse is due to parasite regrowth and not reinfection.

Richardson JB, Evans B, Pyana PP, Van Reet N, Sistrom M, Büscher P, Aksoy S, Caccone A.

Evol Appl. 2016 Jan 9;9(2):381-93. doi: 10.1111/eva.12338. eCollection 2016 Feb.


Multiple Paternity in the Norway Rat, Rattus norvegicus, from Urban Slums in Salvador, Brazil.

Costa F, Richardson JL, Dion K, Mariani C, Pertile AC, Burak MK, Childs JE, Ko AI, Caccone A.

J Hered. 2016 Mar;107(2):181-6. doi: 10.1093/jhered/esv098. Epub 2016 Jan 4.


Description of a New Galapagos Giant Tortoise Species (Chelonoidis; Testudines: Testudinidae) from Cerro Fatal on Santa Cruz Island.

Poulakakis N, Edwards DL, Chiari Y, Garrick RC, Russello MA, Benavides E, Watkins-Colwell GJ, Glaberman S, Tapia W, Gibbs JP, Cayot LJ, Caccone A.

PLoS One. 2015 Oct 21;10(10):e0138779. doi: 10.1371/journal.pone.0138779. eCollection 2015.


Mitochondrial DNA sequence divergence and diversity of Glossina fuscipes fuscipes in the Lake Victoria basin of Uganda: implications for control.

Kato AB, Hyseni C, Okedi LM, Ouma JO, Aksoy S, Caccone A, Masembe C.

Parasit Vectors. 2015 Jul 22;8:385. doi: 10.1186/s13071-015-0984-1.


Whole genome capture of vector-borne pathogens from mixed DNA samples: a case study of Borrelia burgdorferi.

Carpi G, Walter KS, Bent SJ, Hoen AG, Diuk-Wasser M, Caccone A.

BMC Genomics. 2015 Jun 6;16:434. doi: 10.1186/s12864-015-1634-x.


Hybridization masks speciation in the evolutionary history of the Galápagos marine iguana.

MacLeod A, Rodríguez A, Vences M, Orozco-terWengel P, García C, Trillmich F, Gentile G, Caccone A, Quezada G, Steinfartz S.

Proc Biol Sci. 2015 Jun 22;282(1809):20150425. doi: 10.1098/rspb.2015.0425.


Genetic diversity and population structure of Trypanosoma brucei in Uganda: implications for the epidemiology of sleeping sickness and Nagana.

Echodu R, Sistrom M, Bateta R, Murilla G, Okedi L, Aksoy S, Enyioha C, Enyaru J, Opiyo E, Gibson W, Caccone A.

PLoS Negl Trop Dis. 2015 Feb 19;9(2):e0003353. doi: 10.1371/journal.pntd.0003353. eCollection 2015 Feb.

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