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Items: 1 to 50 of 140

1.

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis.

Roudier F, Ahmed I, Bérard C, Sarazin A, Mary-Huard T, Cortijo S, Bouyer D, Caillieux E, Duvernois-Berthet E, Al-Shikhley L, Giraut L, Després B, Drevensek S, Barneche F, Dèrozier S, Brunaud V, Aubourg S, Schnittger A, Bowler C, Martin-Magniette ML, Robin S, Caboche M, Colot V.

EMBO J. 2011 May 18;30(10):1928-38. doi: 10.1038/emboj.2011.103. Epub 2011 Apr 12.

2.

Arabidopsis seed secrets unravelled after a decade of genetic and omics-driven research.

North H, Baud S, Debeaujon I, Dubos C, Dubreucq B, Grappin P, Jullien M, Lepiniec L, Marion-Poll A, Miquel M, Rajjou L, Routaboul JM, Caboche M.

Plant J. 2010 Mar;61(6):971-81. doi: 10.1111/j.1365-313X.2009.04095.x. Review.

3.

Specificities of plant development.

Caboche M.

C R Biol. 2010 Apr;333(4):288-9. doi: 10.1016/j.crvi.2010.01.009. Epub 2010 Mar 11. No abstract available.

PMID:
20371102
4.

Uracil salvage is necessary for early Arabidopsis development.

Mainguet SE, Gakière B, Majira A, Pelletier S, Bringel F, Guérard F, Caboche M, Berthomé R, Renou JP.

Plant J. 2009 Oct;60(2):280-91. doi: 10.1111/j.1365-313X.2009.03963.x. Epub 2009 Jul 23.

5.

The seeds of life.

Job D, Caboche M.

C R Biol. 2008 Oct;331(10):711-4. doi: 10.1016/j.crvi.2008.08.001. Epub 2008 Sep 4. No abstract available.

PMID:
18926484
6.

Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis.

Santos-Mendoza M, Dubreucq B, Baud S, Parcy F, Caboche M, Lepiniec L.

Plant J. 2008 May;54(4):608-20. doi: 10.1111/j.1365-313X.2008.03461.x.

7.

Mutation detection using ENDO1: application to disease diagnostics in humans and TILLING and Eco-TILLING in plants.

Triques K, Piednoir E, Dalmais M, Schmidt J, Le Signor C, Sharkey M, Caboche M, Sturbois B, Bendahmane A.

BMC Mol Biol. 2008 Apr 23;9:42. doi: 10.1186/1471-2199-9-42.

8.

Contrasted microcolinearity and gene evolution within a homoeologous region of wheat and barley species.

Chantret N, Salse J, Sabot F, Bellec A, Laubin B, Dubois I, Dossat C, Sourdille P, Joudrier P, Gautier MF, Cattolico L, Beckert M, Aubourg S, Weissenbach J, Caboche M, Leroy P, Bernard M, Chalhoub B.

J Mol Evol. 2008 Feb;66(2):138-50. doi: 10.1007/s00239-008-9066-8. Epub 2008 Feb 15.

PMID:
18274696
9.

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.

Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyère C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pè ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quétier F, Wincker P; French-Italian Public Consortium for Grapevine Genome Characterization.

Nature. 2007 Sep 27;449(7161):463-7. Epub 2007 Aug 26.

PMID:
17721507
10.

Characterization of Arabidopsis thaliana mismatch specific endonucleases: application to mutation discovery by TILLING in pea.

Triques K, Sturbois B, Gallais S, Dalmais M, Chauvin S, Clepet C, Aubourg S, Rameau C, Caboche M, Bendahmane A.

Plant J. 2007 Sep;51(6):1116-25. Epub 2007 Jul 25.

11.
12.

An eIF4E allele confers resistance to an uncapped and non-polyadenylated RNA virus in melon.

Nieto C, Morales M, Orjeda G, Clepet C, Monfort A, Sturbois B, Puigdomènech P, Pitrat M, Caboche M, Dogimont C, Garcia-Mas J, Aranda MA, Bendahmane A.

Plant J. 2006 Nov;48(3):452-62. Epub 2006 Oct 5.

13.

Anchoring of a large set of markers onto a BAC library for the development of a draft physical map of the grapevine genome.

Lamoureux D, Bernole A, Le Clainche I, Tual S, Thareau V, Paillard S, Legeai F, Dossat C, Wincker P, Oswald M, Merdinoglu D, Vignault C, Delrot S, Caboche M, Chalhoub B, Adam-Blondon AF.

Theor Appl Genet. 2006 Jul;113(2):344-56. Epub 2006 May 18.

PMID:
16791700
15.

Genetics and biochemistry of seed flavonoids.

Lepiniec L, Debeaujon I, Routaboul JM, Baudry A, Pourcel L, Nesi N, Caboche M.

Annu Rev Plant Biol. 2006;57:405-30. Review.

PMID:
16669768
16.

Flavonoid diversity and biosynthesis in seed of Arabidopsis thaliana.

Routaboul JM, Kerhoas L, Debeaujon I, Pourcel L, Caboche M, Einhorn J, Lepiniec L.

Planta. 2006 Jun;224(1):96-107. Epub 2006 Jan 5.

PMID:
16395586
17.

TRANSPARENT TESTA10 encodes a laccase-like enzyme involved in oxidative polymerization of flavonoids in Arabidopsis seed coat.

Pourcel L, Routaboul JM, Kerhoas L, Caboche M, Lepiniec L, Debeaujon I.

Plant Cell. 2005 Nov;17(11):2966-80. Epub 2005 Oct 21.

18.

The AtSUC5 sucrose transporter specifically expressed in the endosperm is involved in early seed development in Arabidopsis.

Baud S, Wuillème S, Lemoine R, Kronenberger J, Caboche M, Lepiniec L, Rochat C.

Plant J. 2005 Sep;43(6):824-36.

19.

LEAFY COTYLEDON 2 activation is sufficient to trigger the accumulation of oil and seed specific mRNAs in Arabidopsis leaves.

Santos Mendoza M, Dubreucq B, Miquel M, Caboche M, Lepiniec L.

FEBS Lett. 2005 Aug 29;579(21):4666-70.

20.

A physical map covering the nsv locus that confers resistance to Melon necrotic spot virus in melon (Cucumis melo L.).

Morales M, Orjeda G, Nieto C, van Leeuwen H, Monfort A, Charpentier M, Caboche M, Arús P, Puigdomènech P, Aranda MA, Dogimont C, Bendahmane A, Garcia-Mas J.

Theor Appl Genet. 2005 Sep;111(5):914-22. Epub 2005 Oct 18.

PMID:
16052354
21.

Construction and characterization of BAC libraries from major grapevine cultivars.

Adam-Blondon AF, Bernole A, Faes G, Lamoureux D, Pateyron S, Grando MS, Caboche M, Velasco R, Chalhoub B.

Theor Appl Genet. 2005 May;110(8):1363-71. Epub 2005 Apr 16.

PMID:
15834699
22.

Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops).

Chantret N, Salse J, Sabot F, Rahman S, Bellec A, Laubin B, Dubois I, Dossat C, Sourdille P, Joudrier P, Gautier MF, Cattolico L, Beckert M, Aubourg S, Weissenbach J, Caboche M, Bernard M, Leroy P, Chalhoub B.

Plant Cell. 2005 Apr;17(4):1033-45. Epub 2005 Mar 4.

23.

Direct targeting and rapid isolation of BAC clones spanning a defined chromosome region.

Isidore E, Scherrer B, Bellec A, Budin K, Faivre-Rampant P, Waugh R, Keller B, Caboche M, Feuillet C, Chalhoub B.

Funct Integr Genomics. 2005 Apr;5(2):97-103. Epub 2005 Jan 22.

PMID:
15666175
24.

GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts.

Aubourg S, Brunaud V, Bruyère C, Cock M, Cooke R, Cottet A, Couloux A, Déhais P, Deléage G, Duclert A, Echeverria M, Eschbach A, Falconet D, Filippi G, Gaspin C, Geourjon C, Grienenberger JM, Houlné G, Jamet E, Lechauve F, Leleu O, Leroy P, Mache R, Meyer C, Nedjari H, Negrutiu I, Orsini V, Peyretaillade E, Pommier C, Raes J, Risler JL, Rivière S, Rombauts S, Rouzé P, Schneider M, Schwob P, Small I, Soumayet-Kampetenga G, Stankovski D, Toffano C, Tognolli M, Caboche M, Lecharny A.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D641-6.

25.

Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications.

Hilson P, Allemeersch J, Altmann T, Aubourg S, Avon A, Beynon J, Bhalerao RP, Bitton F, Caboche M, Cannoot B, Chardakov V, Cognet-Holliger C, Colot V, Crowe M, Darimont C, Durinck S, Eickhoff H, de Longevialle AF, Farmer EE, Grant M, Kuiper MT, Lehrach H, Léon C, Leyva A, Lundeberg J, Lurin C, Moreau Y, Nietfeld W, Paz-Ares J, Reymond P, Rouzé P, Sandberg G, Segura MD, Serizet C, Tabrett A, Taconnat L, Thareau V, Van Hummelen P, Vercruysse S, Vuylsteke M, Weingartner M, Weisbeek PJ, Wirta V, Wittink FR, Zabeau M, Small I.

Genome Res. 2004 Oct;14(10B):2176-89.

26.

Construction of a subgenomic BAC library specific for chromosomes 1D, 4D and 6D of hexaploid wheat.

Janda J, Bartos J, Safár J, Kubaláková M, Valárik M, Cíhalíková J, Simková H, Caboche M, Sourdille P, Bernard M, Chalhoub B, Dolezel J.

Theor Appl Genet. 2004 Nov;109(7):1337-45. Epub 2004 Sep 10.

PMID:
15365624
27.

Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat.

Safár J, Bartos J, Janda J, Bellec A, Kubaláková M, Valárik M, Pateyron S, Weiserová J, Tusková R, Cíhalíková J, Vrána J, Simková H, Faivre-Rampant P, Sourdille P, Caboche M, Bernard M, Dolezel J, Chalhoub B.

Plant J. 2004 Sep;39(6):960-8.

28.

High-resolution mapping and chromosome landing at the root-know nematode resistance locus Ma from Myrobalan plum using a large-insert BAC DNA library.

Claverie M, Dirlewanger E, Cosson P, Bosselut N, Lecouls AC, Voisin R, Kleinhentz M, Lafargue B, Caboche M, Chalhoub B, Esmenjaud D.

Theor Appl Genet. 2004 Oct;109(6):1318-27.

PMID:
15322755
29.

Structural analysis of the eukaryotic initiation factor 4E gene controlling potyvirus resistance in pepper: exploitation of a BAC library.

Ruffel S, Caranta C, Palloix A, Lefebvre V, Caboche M, Bendahmane A.

Gene. 2004 Sep 1;338(2):209-16.

PMID:
15315824
30.

Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.

Lurin C, Andrés C, Aubourg S, Bellaoui M, Bitton F, Bruyère C, Caboche M, Debast C, Gualberto J, Hoffmann B, Lecharny A, Le Ret M, Martin-Magniette ML, Mireau H, Peeters N, Renou JP, Szurek B, Taconnat L, Small I.

Plant Cell. 2004 Aug;16(8):2089-103. Epub 2004 Jul 21.

31.

TT2, TT8, and TTG1 synergistically specify the expression of BANYULS and proanthocyanidin biosynthesis in Arabidopsis thaliana.

Baudry A, Heim MA, Dubreucq B, Caboche M, Weisshaar B, Lepiniec L.

Plant J. 2004 Aug;39(3):366-80.

32.

gurke and pasticcino3 mutants affected in embryo development are impaired in acetyl-CoA carboxylase.

Baud S, Bellec Y, Miquel M, Bellini C, Caboche M, Lepiniec L, Faure JD, Rochat C.

EMBO Rep. 2004 May;5(5):515-20. Epub 2004 Apr 16.

33.

Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation.

Castelli V, Aury JM, Jaillon O, Wincker P, Clepet C, Menard M, Cruaud C, Quétier F, Scarpelli C, Schächter V, Temple G, Caboche M, Weissenbach J, Salanoubat M.

Genome Res. 2004 Mar;14(3):406-13.

34.

Improved full-length cDNA production based on RNA tagging by T4 DNA ligase.

Clepet C, Le Clainche I, Caboche M.

Nucleic Acids Res. 2004 Jan 2;32(1):e6.

35.

FLAGdb++: a database for the functional analysis of the Arabidopsis genome.

Samson F, Brunaud V, Duchêne S, De Oliveira Y, Caboche M, Lecharny A, Aubourg S.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D347-50.

36.

Proanthocyanidin-accumulating cells in Arabidopsis testa: regulation of differentiation and role in seed development.

Debeaujon I, Nesi N, Perez P, Devic M, Grandjean O, Caboche M, Lepiniec L.

Plant Cell. 2003 Nov;15(11):2514-31. Epub 2003 Oct 10.

37.

Multifunctional acetyl-CoA carboxylase 1 is essential for very long chain fatty acid elongation and embryo development in Arabidopsis.

Baud S, Guyon V, Kronenberger J, Wuillème S, Miquel M, Caboche M, Lepiniec L, Rochat C.

Plant J. 2003 Jan;33(1):75-86.

38.

Identification of the fertility restoration locus, Rfo, in radish, as a member of the pentatricopeptide-repeat protein family.

Desloire S, Gherbi H, Laloui W, Marhadour S, Clouet V, Cattolico L, Falentin C, Giancola S, Renard M, Budar F, Small I, Caboche M, Delourme R, Bendahmane A.

EMBO Rep. 2003 Jun;4(6):588-94.

39.

T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites.

Brunaud V, Balzergue S, Dubreucq B, Aubourg S, Samson F, Chauvin S, Bechtold N, Cruaud C, DeRose R, Pelletier G, Lepiniec L, Caboche M, Lecharny A.

EMBO Rep. 2002 Dec;3(12):1152-7. Epub 2002 Nov 21.

40.

The TRANSPARENT TESTA16 locus encodes the ARABIDOPSIS BSISTER MADS domain protein and is required for proper development and pigmentation of the seed coat.

Nesi N, Debeaujon I, Jond C, Stewart AJ, Jenkins GI, Caboche M, Lepiniec L.

Plant Cell. 2002 Oct;14(10):2463-79.

41.

FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants.

Samson F, Brunaud V, Balzergue S, Dubreucq B, Lepiniec L, Pelletier G, Caboche M, Lecharny A.

Nucleic Acids Res. 2002 Jan 1;30(1):94-7.

42.
43.

Improved PCR-walking for large-scale isolation of plant T-DNA borders.

Balzergue S, Dubreucq B, Chauvin S, Le-Clainche I, Le Boulaire F, de Rose R, Samson F, Biaudet V, Lecharny A, Cruaud C, Weissenbach J, Caboche M, Lepiniec L.

Biotechniques. 2001 Mar;30(3):496-8, 502, 504. No abstract available.

44.

Arabidopsis glucosidase I mutants reveal a critical role of N-glycan trimming in seed development.

Boisson M, Gomord V, Audran C, Berger N, Dubreucq B, Granier F, Lerouge P, Faye L, Caboche M, Lepiniec L.

EMBO J. 2001 Mar 1;20(5):1010-9.

45.

The TT8 gene encodes a basic helix-loop-helix domain protein required for expression of DFR and BAN genes in Arabidopsis siliques.

Nesi N, Debeaujon I, Jond C, Pelletier G, Caboche M, Lepiniec L.

Plant Cell. 2000 Oct;12(10):1863-78.

46.

The Arabidopsis AtEPR1 extensin-like gene is specifically expressed in endosperm during seed germination.

Dubreucq B, Berger N, Vincent E, Boisson M, Pelletier G, Caboche M, Lepiniec L.

Plant J. 2000 Sep;23(5):643-52.

47.

National Science Foundation-Sponsored Workshop Report: "The 2010 Project" functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them.

Chory J, Ecker JR, Briggs S, Caboche M, Coruzzi GM, Cook D, Dangl J, Grant S, Guerinot ML, Henikoff S, Martienssen R, Okada K, Raikhel NV, Somerville CR, Weigel D.

Plant Physiol. 2000 Jun;123(2):423-6. No abstract available.

48.

The TAG1 locus of Arabidopsis encodes for a diacylglycerol acyltransferase.

Routaboul JM, Benning C, Bechtold N, Caboche M, Lepiniec L.

Plant Physiol Biochem. 1999 Nov;37(11):831-840.

PMID:
10580283
49.

Short communication: emission of nitrous oxide (N2O) from transgenic tobacco expressing antisense NiR mRNA

Goshima N, Mukai T, Suemori M, Takahashi M, Caboche M, Morikawa H.

Plant J. 1999 Jul;19(1):75-80.

50.

The sax1 mutation defines a new locus involved in the brassinosteroid biosynthesis pathway in Arabidopsis thaliana.

Ephritikhine G, Pagant S, Fujioka S, Takatsuto S, Lapous D, Caboche M, Kendrick RE, Barbier-Brygoo H.

Plant J. 1999 May;18(3):315-20.

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