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Items: 29

1.

Functional genomics of the digestive tract in broilers.

Juanchich A, Hennequet-Antier C, Cabau C, Le Bihan-Duval E, Duclos MJ, Mignon-Grasteau S, Narcy A.

BMC Genomics. 2018 Dec 13;19(1):928. doi: 10.1186/s12864-018-5344-z.

2.

Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome.

Pasquier J, Braasch I, Batzel P, Cabau C, Montfort J, Nguyen T, Jouanno E, Berthelot C, Klopp C, Journot L, Postlethwait JH, Guiguen Y, Bobe J.

J Exp Zool B Mol Dev Evol. 2017 Nov;328(7):709-721. doi: 10.1002/jez.b.22770. Epub 2017 Sep 25.

3.

Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies.

Cabau C, Escudié F, Djari A, Guiguen Y, Bobe J, Klopp C.

PeerJ. 2017 Feb 16;5:e2988. doi: 10.7717/peerj.2988. eCollection 2017.

4.

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J.

BMC Genomics. 2016 May 18;17:368. doi: 10.1186/s12864-016-2709-z.

5.

Correction: Design and Characterization of a 52K SNP Chip for Goats.

Tosser-Klopp G, Bardou P, Bouchez O, Cabau C, Crooijmans R, Dong Y, Donnadieu-Tonon C, Eggen A, Heuven HC, Jamli S, Jiken AJ, Klopp C, Lawley CT, McEwan J, Martin P, Moreno CR, Mulsant P, Nabihoudine I, Pailhoux E, Palhière I, Rupp R, Sarry J, Sayre BL, Tircazes A, Wang J, Wang W, Zhang W; International Goat Genome Consortium.

PLoS One. 2016 Mar 24;11(3):e0152632. doi: 10.1371/journal.pone.0152632. eCollection 2016. No abstract available.

6.

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, Bucci G, Buetti I, Burge S, Cabau C, Carlson JW, Chelala C, Chrysostomou C, Cittaro D, Collin O, Cordova R, Cutts RJ, Dassi E, Di Genova A, Djari A, Esposito A, Estrella H, Eyras E, Fernandez-Banet J, Forbes S, Free RC, Fujisawa T, Gadaleta E, Garcia-Manteiga JM, Goodstein D, Gray K, Guerra-Assunção JA, Haggarty B, Han DJ, Han BW, Harris T, Harshbarger J, Hastings RK, Hayes RD, Hoede C, Hu S, Hu ZL, Hutchins L, Kan Z, Kawaji H, Keliet A, Kerhornou A, Kim S, Kinsella R, Klopp C, Kong L, Lawson D, Lazarevic D, Lee JH, Letellier T, Li CY, Lio P, Liu CJ, Luo J, Maass A, Mariette J, Maurel T, Merella S, Mohamed AM, Moreews F, Nabihoudine I, Ndegwa N, Noirot C, Perez-Llamas C, Primig M, Quattrone A, Quesneville H, Rambaldi D, Reecy J, Riba M, Rosanoff S, Saddiq AA, Salas E, Sallou O, Shepherd R, Simon R, Sperling L, Spooner W, Staines DM, Steinbach D, Stone K, Stupka E, Teague JW, Dayem Ullah AZ, Wang J, Ware D, Wong-Erasmus M, Youens-Clark K, Zadissa A, Zhang SJ, Kasprzyk A.

Nucleic Acids Res. 2015 Jul 1;43(W1):W589-98. doi: 10.1093/nar/gkv350. Epub 2015 Apr 20.

7.

High-throughput sequencing analyses of XX genital ridges lacking FOXL2 reveal DMRT1 up-regulation before SOX9 expression during the sex-reversal process in goats.

Elzaiat M, Jouneau L, Thépot D, Klopp C, Allais-Bonnet A, Cabau C, André M, Chaffaux S, Cribiu EP, Pailhoux E, Pannetier M.

Biol Reprod. 2014 Dec;91(6):153. doi: 10.1095/biolreprod.114.122796. Epub 2014 Nov 13.

PMID:
25395674
8.

RNAbrowse: RNA-Seq de novo assembly results browser.

Mariette J, Noirot C, Nabihoudine I, Bardou P, Hoede C, Djari A, Cabau C, Klopp C.

PLoS One. 2014 May 13;9(5):e96821. doi: 10.1371/journal.pone.0096821. eCollection 2014. Erratum in: PLoS One. 2014;9(8):e106187.

9.

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.

Berthelot C, Brunet F, Chalopin D, Juanchich A, Bernard M, Noël B, Bento P, Da Silva C, Labadie K, Alberti A, Aury JM, Louis A, Dehais P, Bardou P, Montfort J, Klopp C, Cabau C, Gaspin C, Thorgaard GH, Boussaha M, Quillet E, Guyomard R, Galiana D, Bobe J, Volff JN, Genêt C, Wincker P, Jaillon O, Roest Crollius H, Guiguen Y.

Nat Commun. 2014 Apr 22;5:3657. doi: 10.1038/ncomms4657.

10.

Design and characterization of a 52K SNP chip for goats.

Tosser-Klopp G, Bardou P, Bouchez O, Cabau C, Crooijmans R, Dong Y, Donnadieu-Tonon C, Eggen A, Heuven HC, Jamli S, Jiken AJ, Klopp C, Lawley CT, McEwan J, Martin P, Moreno CR, Mulsant P, Nabihoudine I, Pailhoux E, Palhière I, Rupp R, Sarry J, Sayre BL, Tircazes A, Jun Wang, Wang W, Zhang W; International Goat Genome Consortium.

PLoS One. 2014 Jan 22;9(1):e86227. doi: 10.1371/journal.pone.0086227. eCollection 2014. Erratum in: PLoS One. 2016;11(3):e0152632.

11.

An overview of gene expression dynamics during early ovarian folliculogenesis: specificity of follicular compartments and bi-directional dialog.

Bonnet A, Cabau C, Bouchez O, Sarry J, Marsaud N, Foissac S, Woloszyn F, Mulsant P, Mandon-Pepin B.

BMC Genomics. 2013 Dec 19;14:904. doi: 10.1186/1471-2164-14-904.

12.

Induced pluripotent stem cells derived from rabbits exhibit some characteristics of naïve pluripotency.

Osteil P, Tapponnier Y, Markossian S, Godet M, Schmaltz-Panneau B, Jouneau L, Cabau C, Joly T, Blachère T, Gócza E, Bernat A, Yerle M, Acloque H, Hidot S, Bosze Z, Duranthon V, Savatier P, Afanassieff M.

Biol Open. 2013 May 10;2(6):613-28. doi: 10.1242/bio.20134242. Print 2013 Jun 15.

13.

Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail.

Frésard L, Leroux S, Dehais P, Servin B, Gilbert H, Bouchez O, Klopp C, Cabau C, Vignoles F, Feve K, Ricros A, Gourichon D, Diot C, Richard S, Leterrier C, Beaumont C, Vignal A, Minvielle F, Pitel F.

BMC Genomics. 2012 Oct 15;13:551. doi: 10.1186/1471-2164-13-551.

14.

Transcriptomic profiling of proteases and antiproteases in the liver of sexually mature hens in relation to vitellogenesis.

Bourin M, Gautron J, Berges M, Hennequet-Antier C, Cabau C, Nys Y, Réhault-Godbert S.

BMC Genomics. 2012 Sep 5;13:457. doi: 10.1186/1471-2164-13-457.

15.

An immune-related gene evolved into the master sex-determining gene in rainbow trout, Oncorhynchus mykiss.

Yano A, Guyomard R, Nicol B, Jouanno E, Quillet E, Klopp C, Cabau C, Bouchez O, Fostier A, Guiguen Y.

Curr Biol. 2012 Aug 7;22(15):1423-8. doi: 10.1016/j.cub.2012.05.045. Epub 2012 Jun 21.

16.

Development and characterisation of an expressed sequence tags (EST)-derived single nucleotide polymorphisms (SNPs) resource in rainbow trout.

Boussaha M, Guyomard R, Cabau C, Esquerré D, Quillet E.

BMC Genomics. 2012 Jun 13;13:238. doi: 10.1186/1471-2164-13-238.

17.

Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach.

Le Cam A, Bobe J, Bouchez O, Cabau C, Kah O, Klopp C, Lareyre JJ, Le Guen I, Lluch J, Montfort J, Moreews F, Nicol B, Prunet P, Rescan PY, Servili A, Guiguen Y.

Gene. 2012 May 25;500(1):32-9. doi: 10.1016/j.gene.2012.03.053. Epub 2012 Mar 30.

PMID:
22465513
18.

Insulin immuno-neutralization in fed chickens: effects on liver and muscle transcriptome.

Simon J, Milenkovic D, Godet E, Cabau C, Collin A, Métayer-Coustard S, Rideau N, Tesseraud S, Derouet M, Crochet S, Cailleau-Audouin E, Hennequet-Antier C, Gespach C, Porter TE, Duclos MJ, Dupont J, Cogburn LA.

Physiol Genomics. 2012 Mar 1;44(5):283-92. doi: 10.1152/physiolgenomics.00057.2011. Epub 2012 Jan 3.

PMID:
22214599
19.

Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources.

Genini S, Badaoui B, Sclep G, Bishop SC, Waddington D, Pinard van der Laan MH, Klopp C, Cabau C, Seyfert HM, Petzl W, Jensen K, Glass EJ, de Greeff A, Smith HE, Smits MA, Olsaker I, Boman GM, Pisoni G, Moroni P, Castiglioni B, Cremonesi P, Del Corvo M, Foulon E, Foucras G, Rupp R, Giuffra E.

BMC Genomics. 2011 May 11;12(1):225. doi: 10.1186/1471-2164-12-225.

20.

PhyleasProg: a user-oriented web server for wide evolutionary analyses.

Busset J, Cabau C, Meslin C, Pascal G.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W479-85. doi: 10.1093/nar/gkr243. Epub 2011 Apr 29.

21.

Kinetics of gene expression and signaling in bovine cumulus cells throughout IVM in different mediums in relation to oocyte developmental competence, cumulus apoptosis and progesterone secretion.

Salhab M, Tosca L, Cabau C, Papillier P, Perreau C, Dupont J, Mermillod P, Uzbekova S.

Theriogenology. 2011 Jan 1;75(1):90-104. doi: 10.1016/j.theriogenology.2010.07.014. Epub 2010 Oct 18.

PMID:
20961603
22.

Gene expression profiling to identify eggshell proteins involved in physical defense of the chicken egg.

Jonchère V, Réhault-Godbert S, Hennequet-Antier C, Cabau C, Sibut V, Cogburn LA, Nys Y, Gautron J.

BMC Genomics. 2010 Jan 21;11:57. doi: 10.1186/1471-2164-11-57.

23.

Revealing the dynamics of gene expression during embryonic genome activation and first differentiation in the rabbit embryo with a dedicated array screening.

Léandri RD, Archilla C, Bui LC, Peynot N, Liu Z, Cabau C, Chastellier A, Renard JP, Duranthon V.

Physiol Genomics. 2009 Jan 8;36(2):98-113. doi: 10.1152/physiolgenomics.90310.2008. Epub 2008 Nov 11.

PMID:
19001509
24.

Identification of transcripts involved in meiosis and follicle formation during ovine ovary development.

Baillet A, Mandon-Pépin B, Cabau C, Poumerol E, Pailhoux E, Cotinot C.

BMC Genomics. 2008 Sep 23;9:436. doi: 10.1186/1471-2164-9-436.

25.

Molecular evidence for a critical period in mural trophoblast development in bovine blastocysts.

Degrelle SA, Campion E, Cabau C, Piumi F, Reinaud P, Richard C, Renard JP, Hue I.

Dev Biol. 2005 Dec 15;288(2):448-60. Epub 2005 Nov 10.

26.

Specialized microbial databases for inductive exploration of microbial genome sequences.

Fang G, Ho C, Qiu Y, Cubas V, Yu Z, Cabau C, Cheung F, Moszer I, Danchin A.

BMC Genomics. 2005 Feb 7;6:14.

27.

Contribution to high-resolution mapping in pigs with 101 type I markers and progress in comparative map between humans and pigs.

Lahbib-Mansais Y, Tosser-Klopp G, Leroux S, Cabau C, Karsenty E, Milan D, Barillot E, Yerle M, Hatey F, Gellin J.

Mamm Genome. 2003 Apr;14(4):275-88.

PMID:
12682780
28.

In the QTL region surrounding porcine MHC, gene order is conserved with human genome.

Genêt C, Renard C, Cabau C, Rogel-Gaillard C, Gellin J, Milan D.

Mamm Genome. 2001 Mar;12(3):246-9.

PMID:
11252175
29.

IMpRH server: an RH mapping server available on the Web.

Milan D, Hawken R, Cabau C, Leroux S, Genet C, Lahbib Y, Tosser G, Robic A, Hatey F, Alexander L, Beattie C, Schook L, Yerle M, Gellin J.

Bioinformatics. 2000 Jun;16(6):558-9.

PMID:
10980153

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