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Items: 1 to 50 of 272

1.

Hijacking the Hijackers: Escherichia coli Pathogenicity Islands Redirect Helper Phage Packaging for Their Own Benefit.

Fillol-Salom A, Bacarizo J, Alqasmi M, Ciges-Tomas JR, Martínez-Rubio R, Roszak AW, Cogdell RJ, Chen J, Marina A, Penadés JR.

Mol Cell. 2019 Jul 8. pii: S1097-2765(19)30473-3. doi: 10.1016/j.molcel.2019.06.017. [Epub ahead of print]

2.

Crystal structure of phycocyanin from heterocyst-forming filamentous cyanobacterium Nostoc sp. WR13.

Patel HM, Roszak AW, Madamwar D, Cogdell RJ.

Int J Biol Macromol. 2019 Aug 15;135:62-68. doi: 10.1016/j.ijbiomac.2019.05.099. Epub 2019 May 20.

PMID:
31121226
3.

Simulating Fluorescence-Detected Two-Dimensional Electronic Spectroscopy of Multichromophoric Systems.

Kunsel T, Tiwari V, Matutes YA, Gardiner AT, Cogdell RJ, Ogilvie JP, Jansen TLC.

J Phys Chem B. 2019 Jan 17;123(2):394-406. doi: 10.1021/acs.jpcb.8b10176. Epub 2019 Jan 3.

4.

Spatially-resolved fluorescence-detected two-dimensional electronic spectroscopy probes varying excitonic structure in photosynthetic bacteria.

Tiwari V, Matutes YA, Gardiner AT, Jansen TLC, Cogdell RJ, Ogilvie JP.

Nat Commun. 2018 Oct 11;9(1):4219. doi: 10.1038/s41467-018-06619-x.

5.

Energy transfer in purple bacterial photosynthetic units from cells grown in various light intensities.

Niedzwiedzki DM, Gardiner AT, Blankenship RE, Cogdell RJ.

Photosynth Res. 2018 Sep;137(3):389-402. doi: 10.1007/s11120-018-0512-1. Epub 2018 May 3.

PMID:
29725994
6.

Understanding/unravelling carotenoid excited singlet states.

Hashimoto H, Uragami C, Yukihira N, Gardiner AT, Cogdell RJ.

J R Soc Interface. 2018 Apr;15(141). pii: 20180026. doi: 10.1098/rsif.2018.0026. Review.

7.

Origin of the Two Bands in the B800 Ring and Their Involvement in the Energy Transfer Network of Allochromatium vinosum.

Schröter M, Alcocer MJP, Cogdell RJ, Kühn O, Zigmantas D.

J Phys Chem Lett. 2018 Mar 15;9(6):1340-1345. doi: 10.1021/acs.jpclett.8b00438. Epub 2018 Mar 6.

PMID:
29488385
8.

Robust light harvesting by a noisy antenna.

Malý P, Gardiner AT, Cogdell RJ, van Grondelle R, Mančal T.

Phys Chem Chem Phys. 2018 Feb 7;20(6):4360-4372. doi: 10.1039/c7cp06139k.

9.

Adaptation of Rhodopseudomonas acidophila strain 7050 to growth at different light intensities: what are the benefits to changing the type of LH2?

Gardiner AT, Niedzwiedzki DM, Cogdell RJ.

Faraday Discuss. 2018 Apr 1;207:471-489. doi: 10.1039/c7fd00191f. Epub 2018 Jan 22.

PMID:
29355274
10.

On Light-Induced Photoconversion of B800 Bacteriochlorophylls in the LH2 Antenna of the Purple Sulfur Bacterium Allochromatium vinosum.

Kell A, Jassas M, Hacking K, Cogdell RJ, Jankowiak R.

J Phys Chem B. 2017 Nov 2;121(43):9999-10006. doi: 10.1021/acs.jpcb.7b06185. Epub 2017 Oct 23.

PMID:
29017010
11.

An improved crystal structure of C-phycoerythrin from the marine cyanobacterium Phormidium sp. A09DM.

Sonani RR, Roszak AW, Ortmann de Percin Northumberland C, Madamwar D, Cogdell RJ.

Photosynth Res. 2018 Mar;135(1-3):65-78. doi: 10.1007/s11120-017-0443-2. Epub 2017 Sep 16.

12.

Nature does not rely on long-lived electronic quantum coherence for photosynthetic energy transfer.

Duan HG, Prokhorenko VI, Cogdell RJ, Ashraf K, Stevens AL, Thorwart M, Miller RJD.

Proc Natl Acad Sci U S A. 2017 Aug 8;114(32):8493-8498. doi: 10.1073/pnas.1702261114. Epub 2017 Jul 25.

13.

Characterisation of a pucBA deletion mutant from Rhodopseudomonas palustris lacking all but the pucBAd genes.

Southall J, Henry SL, Gardiner AT, Roszak AW, Mullen W, Carey AM, Kelly SM, de Percin Northumberland CO, Cogdell RJ.

Photosynth Res. 2018 Mar;135(1-3):9-21. doi: 10.1007/s11120-017-0386-7. Epub 2017 May 31.

14.

Conformational Complexity in the LH2 Antenna of the Purple Sulfur Bacterium Allochromatium vinosum Revealed by Hole-Burning Spectroscopy.

Kell A, Jassas M, Acharya K, Hacking K, Cogdell RJ, Jankowiak R.

J Phys Chem A. 2017 Jun 15;121(23):4435-4446. doi: 10.1021/acs.jpca.7b03188. Epub 2017 Jun 2.

PMID:
28531352
15.

Strategies to enhance the excitation energy-transfer efficiency in a light-harvesting system using the intra-molecular charge transfer character of carotenoids.

Yukihira N, Sugai Y, Fujiwara M, Kosumi D, Iha M, Sakaguchi K, Katsumura S, Gardiner AT, Cogdell RJ, Hashimoto H.

Faraday Discuss. 2017 Jun 2;198:59-71. doi: 10.1039/c6fd00211k.

PMID:
28294216
16.

Angle-resolved coherent wave mixing using a 4  fs ultra-broad bandwidth laser.

Mercer IP, Witting T, Driver T, Cogdell RJ, Marangos JP, Tisch JW.

Opt Lett. 2017 Feb 15;42(4):859-862. doi: 10.1364/OL.42.000859.

17.

Structure of the bacterial plant-ferredoxin receptor FusA.

Grinter R, Josts I, Mosbahi K, Roszak AW, Cogdell RJ, Bonvin AM, Milner JJ, Kelly SM, Byron O, Smith BO, Walker D.

Nat Commun. 2016 Oct 31;7:13308. doi: 10.1038/ncomms13308.

18.

Photocurrent Generation by Photosynthetic Purple Bacterial Reaction Centers Interfaced with a Porous Antimony-Doped Tin Oxide (ATO) Electrode.

Carey AM, Zhang H, Mieritz D, Volosin A, Gardiner AT, Cogdell RJ, Yan H, Seo DK, Lin S, Woodbury NW.

ACS Appl Mater Interfaces. 2016 Sep 28;8(38):25104-10. doi: 10.1021/acsami.6b07940. Epub 2016 Sep 13.

PMID:
27576015
19.

Fluorescence-excitation and Emission Spectroscopy on Single FMO Complexes.

Löhner A, Ashraf K, Cogdell RJ, Köhler J.

Sci Rep. 2016 Aug 22;6:31875. doi: 10.1038/srep31875.

20.

Carotenoids and Photosynthesis.

Hashimoto H, Uragami C, Cogdell RJ.

Subcell Biochem. 2016;79:111-39. doi: 10.1007/978-3-319-39126-7_4. Review.

PMID:
27485220
21.

Origin of bimodal fluorescence enhancement factors of Chlorobaculum tepidum reaction centers on silver island films.

Maćkowski S, Czechowski N, Ashraf KU, Szalkowski M, Lokstein H, Cogdell RJ, Kowalska D.

FEBS Lett. 2016 Aug;590(16):2558-65. doi: 10.1002/1873-3468.12292. Epub 2016 Jul 26.

22.

Vibronic coupling in the excited-states of carotenoids.

Miki T, Buckup T, Krause MS, Southall J, Cogdell RJ, Motzkus M.

Phys Chem Chem Phys. 2016 Apr 28;18(16):11443-53. doi: 10.1039/c5cp07542d.

PMID:
27055720
23.

Ultrafast energy relaxation in single light-harvesting complexes.

Malý P, Gruber JM, Cogdell RJ, Mančal T, van Grondelle R.

Proc Natl Acad Sci U S A. 2016 Mar 15;113(11):2934-9. doi: 10.1073/pnas.1522265113. Epub 2016 Feb 22.

24.

Dark States in the Light-Harvesting complex 2 Revealed by Two-dimensional Electronic Spectroscopy.

Ferretti M, Hendrikx R, Romero E, Southall J, Cogdell RJ, Novoderezhkin VI, Scholes GD, van Grondelle R.

Sci Rep. 2016 Feb 9;6:20834. doi: 10.1038/srep20834.

25.

Photoprotection Mechanism of Light-Harvesting Antenna Complex from Purple Bacteria.

Kosumi D, Horibe T, Sugisaki M, Cogdell RJ, Hashimoto H.

J Phys Chem B. 2016 Feb 11;120(5):951-6. doi: 10.1021/acs.jpcb.6b00121. Epub 2016 Feb 2.

PMID:
26800035
26.

A Highly Conserved Bacterial D-Serine Uptake System Links Host Metabolism and Virulence.

Connolly JP, Gabrielsen M, Goldstone RJ, Grinter R, Wang D, Cogdell RJ, Walker D, Smith DG, Roe AJ.

PLoS Pathog. 2016 Jan 4;12(1):e1005359. doi: 10.1371/journal.ppat.1005359. eCollection 2016 Jan.

27.

DNA-directed spatial assembly of photosynthetic light-harvesting proteins.

Henry SL, Withers JM, Singh I, Cooper JM, Clark AW, Burley GA, Cogdell RJ.

Org Biomol Chem. 2016 Jan 28;14(4):1359-62. doi: 10.1039/c5ob02351c. Epub 2015 Dec 14.

28.

Elementary Energy Transfer Pathways in Allochromatium vinosum Photosynthetic Membranes.

Lüer L, Carey AM, Henry S, Maiuri M, Hacking K, Polli D, Cerullo G, Cogdell RJ.

Biophys J. 2015 Nov 3;109(9):1885-98. doi: 10.1016/j.bpj.2015.09.008.

29.

Fluorescence polarization measures energy funneling in single light-harvesting antennas--LH2 vs conjugated polymers.

Camacho R, Tubasum S, Southall J, Cogdell RJ, Sforazzini G, Anderson HL, Pullerits T, Scheblykin IG.

Sci Rep. 2015 Oct 19;5:15080. doi: 10.1038/srep15080.

30.

Activated OCP unlocks nonphotochemical quenching in cyanobacteria.

Cogdell RJ, Gardiner AT.

Proc Natl Acad Sci U S A. 2015 Oct 13;112(41):12547-8. doi: 10.1073/pnas.1517477112. Epub 2015 Oct 2. No abstract available.

31.

Conformational Memory of a Protein Revealed by Single-Molecule Spectroscopy.

Schörner M, Beyer SR, Southall J, Cogdell RJ, Köhler J.

J Phys Chem B. 2015 Nov 5;119(44):13964-70. doi: 10.1021/acs.jpcb.5b07494. Epub 2015 Oct 14.

PMID:
26420643
32.

Multi-Level, Multi Time-Scale Fluorescence Intermittency of Photosynthetic LH2 Complexes: A Precursor of Non-Photochemical Quenching?

Schörner M, Beyer SR, Southall J, Cogdell RJ, Köhler J.

J Phys Chem B. 2015 Nov 5;119(44):13958-63. doi: 10.1021/acs.jpcb.5b06979. Epub 2015 Oct 14.

PMID:
26419118
33.

Structures of the Ultra-High-Affinity Protein-Protein Complexes of Pyocins S2 and AP41 and Their Cognate Immunity Proteins from Pseudomonas aeruginosa.

Joshi A, Grinter R, Josts I, Chen S, Wojdyla JA, Lowe ED, Kaminska R, Sharp C, McCaughey L, Roszak AW, Cogdell RJ, Byron O, Walker D, Kleanthous C.

J Mol Biol. 2015 Aug 28;427(17):2852-66. doi: 10.1016/j.jmb.2015.07.014. Epub 2015 Jul 26.

34.

Silver island film substrates for ultrasensitive fluorescence detection of (bio)molecules.

Szalkowski M, Ashraf KU, Lokstein H, Mackowski S, Cogdell RJ, Kowalska D.

Photosynth Res. 2016 Jan;127(1):103-8. doi: 10.1007/s11120-015-0178-x. Epub 2015 Jul 14.

PMID:
26168991
35.

Structure of protease-cleaved Escherichia coli α-2-macroglobulin reveals a putative mechanism of conformational activation for protease entrapment.

Fyfe CD, Grinter R, Josts I, Mosbahi K, Roszak AW, Cogdell RJ, Wall DM, Burchmore RJ, Byron O, Walker D.

Acta Crystallogr D Biol Crystallogr. 2015 Jul;71(Pt 7):1478-86. doi: 10.1107/S1399004715008548. Epub 2015 Jun 30.

36.

Towards quantification of vibronic coupling in photosynthetic antenna complexes.

Singh VP, Westberg M, Wang C, Dahlberg PD, Gellen T, Gardiner AT, Cogdell RJ, Engel GS.

J Chem Phys. 2015 Jun 7;142(21):212446. doi: 10.1063/1.4921324.

37.

Vibronic coupling explains the ultrafast carotenoid-to-bacteriochlorophyll energy transfer in natural and artificial light harvesters.

Perlík V, Seibt J, Cranston LJ, Cogdell RJ, Lincoln CN, Savolainen J, Šanda F, Mančal T, Hauer J.

J Chem Phys. 2015 Jun 7;142(21):212434. doi: 10.1063/1.4919548.

PMID:
26049454
38.

Ultra-broadband 2D electronic spectroscopy of carotenoid-bacteriochlorophyll interactions in the LH1 complex of a purple bacterium.

Maiuri M, Réhault J, Carey AM, Hacking K, Garavelli M, Lüer L, Polli D, Cogdell RJ, Cerullo G.

J Chem Phys. 2015 Jun 7;142(21):212433. doi: 10.1063/1.4919056.

PMID:
26049453
39.

Spectral heterogeneity and carotenoid-to-bacteriochlorophyll energy transfer in LH2 light-harvesting complexes from Allochromatium vinosum.

Magdaong NM, LaFountain AM, Hacking K, Niedzwiedzki DM, Gibson GN, Cogdell RJ, Frank HA.

Photosynth Res. 2016 Feb;127(2):171-87. doi: 10.1007/s11120-015-0165-2. Epub 2015 Jun 6.

PMID:
26048106
40.

The host metabolite D-serine contributes to bacterial niche specificity through gene selection.

Connolly JP, Goldstone RJ, Burgess K, Cogdell RJ, Beatson SA, Vollmer W, Smith DG, Roe AJ.

ISME J. 2015 Mar 17;9(4):1052. doi: 10.1038/ismej.2015.17. No abstract available.

41.

The open, the closed, and the empty: time-resolved fluorescence spectroscopy and computational analysis of RC-LH1 complexes from Rhodopseudomonas palustris.

Beyer SR, Müller L, Southall J, Cogdell RJ, Ullmann GM, Köhler J.

J Phys Chem B. 2015 Jan 29;119(4):1362-73. doi: 10.1021/jp510822k. Epub 2015 Jan 7.

PMID:
25526393
42.

The host metabolite D-serine contributes to bacterial niche specificity through gene selection.

Connolly JP, Goldstone RJ, Burgess K, Cogdell RJ, Beatson SA, Vollmer W, Smith DG, Roe AJ.

ISME J. 2015 Mar 17;9(4):1039-51. doi: 10.1038/ismej.2014.242. Erratum in: ISME J. 2015 Apr;9(4):1052.

43.

High efficiency light harvesting by carotenoids in the LH2 complex from photosynthetic bacteria: unique adaptation to growth under low-light conditions.

Magdaong NM, LaFountain AM, Greco JA, Gardiner AT, Carey AM, Cogdell RJ, Gibson GN, Birge RR, Frank HA.

J Phys Chem B. 2014 Sep 25;118(38):11172-89. doi: 10.1021/jp5070984. Epub 2014 Sep 11.

44.

Characterisation of the LH2 spectral variants produced by the photosynthetic purple sulphur bacterium Allochromatium vinosum.

Carey AM, Hacking K, Picken N, Honkanen S, Kelly S, Niedzwiedzki DM, Blankenship RE, Shimizu Y, Wang-Otomo ZY, Cogdell RJ.

Biochim Biophys Acta. 2014 Nov;1837(11):1849-1860. doi: 10.1016/j.bbabio.2014.07.022. Epub 2014 Aug 8.

45.

Crystallization and preliminary X-ray diffraction analysis of the peripheral light-harvesting complex LH2 from Marichromatium purpuratum.

Cranston LJ, Roszak AW, Cogdell RJ.

Acta Crystallogr F Struct Biol Commun. 2014 Jun;70(Pt 6):808-13. doi: 10.1107/S2053230X14009303. Epub 2014 May 24.

46.

Structures and binding specificity of galactose- and mannose-binding lectins from champedak: differences from jackfruit lectins.

Gabrielsen M, Abdul-Rahman PS, Othman S, Hashim OH, Cogdell RJ.

Acta Crystallogr F Struct Biol Commun. 2014 Jun;70(Pt 6):709-16. doi: 10.1107/S2053230X14008966. Epub 2014 May 24.

47.

Structure of the atypical bacteriocin pectocin M2 implies a novel mechanism of protein uptake.

Grinter R, Josts I, Zeth K, Roszak AW, McCaughey LC, Cogdell RJ, Milner JJ, Kelly SM, Byron O, Walker D.

Mol Microbiol. 2014 Jul;93(2):234-46. doi: 10.1111/mmi.12655. Epub 2014 Jun 18.

48.

Single-molecule spectroscopy unmasks the lowest exciton state of the B850 assembly in LH2 from Rps. acidophila.

Kunz R, Timpmann K, Southall J, Cogdell RJ, Freiberg A, Köhler J.

Biophys J. 2014 May 6;106(9):2008-16. doi: 10.1016/j.bpj.2014.03.023.

49.

Polarization control of metal-enhanced fluorescence in hybrid assemblies of photosynthetic complexes and gold nanorods.

Bujak Ł, Olejnik M, Brotosudarmo TH, Schmidt MK, Czechowski N, Piatkowski D, Aizpurua J, Cogdell RJ, Heiss W, Mackowski S.

Phys Chem Chem Phys. 2014 May 21;16(19):9015-22. doi: 10.1039/c3cp54364a.

PMID:
24695542
50.

Structural biology: The purple heart of photosynthesis.

Cogdell RJ, Roszak AW.

Nature. 2014 Apr 10;508(7495):196-7. doi: 10.1038/nature13219. Epub 2014 Mar 26. No abstract available.

PMID:
24670653

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