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A slow transcription rate causes embryonic lethality and perturbs kinetic coupling of neuronal genes.

Maslon MM, Braunschweig U, Aitken S, Mann AR, Kilanowski F, Hunter CJ, Blencowe BJ, Kornblihtt AR, Adams IR, Cáceres JF.

EMBO J. 2019 May 2;38(9). pii: e101244. doi: 10.15252/embj.2018101244. Epub 2019 Apr 15.


Rapid Depletion of DIS3, EXOSC10, or XRN2 Reveals the Immediate Impact of Exoribonucleolysis on Nuclear RNA Metabolism and Transcriptional Control.

Davidson L, Francis L, Cordiner RA, Eaton JD, Estell C, Macias S, Cáceres JF, West S.

Cell Rep. 2019 Mar 5;26(10):2779-2791.e5. doi: 10.1016/j.celrep.2019.02.012.


Post-transcriptional control of miRNA biogenesis.

Michlewski G, Cáceres JF.

RNA. 2019 Jan;25(1):1-16. doi: 10.1261/rna.068692.118. Epub 2018 Oct 17. Review.


Structural basis for terminal loop recognition and stimulation of pri-miRNA-18a processing by hnRNP A1.

Kooshapur H, Choudhury NR, Simon B, Mühlbauer M, Jussupow A, Fernandez N, Jones AN, Dallmann A, Gabel F, Camilloni C, Michlewski G, Caceres JF, Sattler M.

Nat Commun. 2018 Jun 26;9(1):2479. doi: 10.1038/s41467-018-04871-9.


The Secretion of miR-200s by a PKCζ/ADAR2 Signaling Axis Promotes Liver Metastasis in Colorectal Cancer.

Shelton PM, Duran A, Nakanishi Y, Reina-Campos M, Kasashima H, Llado V, Ma L, Campos A, García-Olmo D, García-Arranz M, García-Olmo DC, Olmedillas-López S, Caceres JF, Diaz-Meco MT, Moscat J.

Cell Rep. 2018 Apr 24;23(4):1178-1191. doi: 10.1016/j.celrep.2018.03.118.


Genetic variation and RNA structure regulate microRNA biogenesis.

Fernandez N, Cordiner RA, Young RS, Hug N, Macias S, Cáceres JF.

Nat Commun. 2017 May 3;8:15114. doi: 10.1038/ncomms15114.


Compound heterozygous variants in NBAS as a cause of atypical osteogenesis imperfecta.

Balasubramanian M, Hurst J, Brown S, Bishop NJ, Arundel P, DeVile C, Pollitt RC, Crooks L, Longman D, Caceres JF, Shackley F, Connolly S, Payne JH, Offiah AC, Hughes D; DDD Study, Parker MJ, Hide W, Skerry TM.

Bone. 2017 Jan;94:65-74. doi: 10.1016/j.bone.2016.10.023. Epub 2016 Oct 24.


The RNA-binding landscape of RBM10 and its role in alternative splicing regulation in models of mouse early development.

Rodor J, FitzPatrick DR, Eyras E, Cáceres JF.

RNA Biol. 2017 Jan 2;14(1):45-57. doi: 10.1080/15476286.2016.1247148. Epub 2016 Oct 20.


The RNA-binding profile of Acinus, a peripheral component of the exon junction complex, reveals its role in splicing regulation.

Rodor J, Pan Q, Blencowe BJ, Eyras E, Cáceres JF.

RNA. 2016 Sep;22(9):1411-26. doi: 10.1261/rna.057158.116. Epub 2016 Jun 30.


The RNA helicase DHX34 functions as a scaffold for SMG1-mediated UPF1 phosphorylation.

Melero R, Hug N, López-Perrote A, Yamashita A, Cáceres JF, Llorca O.

Nat Commun. 2016 Feb 4;7:10585. doi: 10.1038/ncomms10585.


Mechanism and regulation of the nonsense-mediated decay pathway.

Hug N, Longman D, Cáceres JF.

Nucleic Acids Res. 2016 Feb 29;44(4):1483-95. doi: 10.1093/nar/gkw010. Epub 2016 Jan 14. Review.


DGCR8 Acts as an Adaptor for the Exosome Complex to Degrade Double-Stranded Structured RNAs.

Macias S, Cordiner RA, Gautier P, Plass M, Cáceres JF.

Mol Cell. 2015 Dec 17;60(6):873-85. doi: 10.1016/j.molcel.2015.11.011. Epub 2015 Dec 10.


Coinfection of Trypanosoma cruzi and Mycobacterium tuberculosis in a patient from Colombia.

Villamil-Gómez WE, Silvera LA, Henao-Palencia S, Contreras-Arrieta J, Cáceres JF, Ortiz-Martínez Y, Villadiego-Álvarez L, Cantero-Muñoz V, Rodriguez-Morales AJ.

J Infect Public Health. 2016 Jan-Feb;9(1):113-5. doi: 10.1016/j.jiph.2015.09.004. Epub 2015 Oct 29. No abstract available.


Identification and characterization of novel factors that act in the nonsense-mediated mRNA decay pathway in nematodes, flies and mammals.

Casadio A, Longman D, Hug N, Delavaine L, Vallejos Baier R, Alonso CR, Cáceres JF.

EMBO Rep. 2015 Jan;16(1):71-8. doi: 10.15252/embr.201439183. Epub 2014 Dec 1.


Control of mammalian retrotransposons by cellular RNA processing activities.

Heras SR, Macias S, Cáceres JF, Garcia-Perez JL.

Mob Genet Elements. 2014 Mar 6;4:e28439. eCollection 2014.


The RNA helicase DHX34 activates NMD by promoting a transition from the surveillance to the decay-inducing complex.

Hug N, Cáceres JF.

Cell Rep. 2014 Sep 25;8(6):1845-1856. doi: 10.1016/j.celrep.2014.08.020. Epub 2014 Sep 15.


Drosha Regulates Gene Expression Independently of RNA Cleavage Function.

Gromak N, Dienstbier M, Macias S, Plass M, Eyras E, Cáceres JF, Proudfoot NJ.

Cell Rep. 2014 Jun 12;7(5):1753-1754. doi: 10.1016/j.celrep.2014.05.047. Epub 2014 Jun 12. No abstract available.


The translational landscape of the splicing factor SRSF1 and its role in mitosis.

Maslon MM, Heras SR, Bellora N, Eyras E, Cáceres JF.

Elife. 2014 May 6:e02028. doi: 10.7554/eLife.02028. [Epub ahead of print]


Drosha regulates gene expression independently of RNA cleavage function.

Gromak N, Dienstbier M, Macias S, Plass M, Eyras E, Cáceres JF, Proudfoot NJ.

Cell Rep. 2013 Dec 26;5(6):1499-510. doi: 10.1016/j.celrep.2013.11.032. Epub 2013 Dec 19. Erratum in: Cell Rep. 2014 Jun 12;7(5):1753-4.


The Microprocessor controls the activity of mammalian retrotransposons.

Heras SR, Macias S, Plass M, Fernandez N, Cano D, Eyras E, Garcia-Perez JL, Cáceres JF.

Nat Struct Mol Biol. 2013 Oct;20(10):1173-81. doi: 10.1038/nsmb.2658. Epub 2013 Sep 1.


Cellular functions of the microprocessor.

Macias S, Cordiner RA, Cáceres JF.

Biochem Soc Trans. 2013 Aug;41(4):838-43. doi: 10.1042/BST20130011. Review.


DHX34 and NBAS form part of an autoregulatory NMD circuit that regulates endogenous RNA targets in human cells, zebrafish and Caenorhabditis elegans.

Longman D, Hug N, Keith M, Anastasaki C, Patton EE, Grimes G, Cáceres JF.

Nucleic Acids Res. 2013 Sep;41(17):8319-31. doi: 10.1093/nar/gkt585. Epub 2013 Jul 4.


Tissue-specific control of brain-enriched miR-7 biogenesis.

Choudhury NR, de Lima Alves F, de Andrés-Aguayo L, Graf T, Cáceres JF, Rappsilber J, Michlewski G.

Genes Dev. 2013 Jan 1;27(1):24-38. doi: 10.1101/gad.199190.112.


DGCR8 HITS-CLIP reveals novel functions for the Microprocessor.

Macias S, Plass M, Stajuda A, Michlewski G, Eyras E, Cáceres JF.

Nat Struct Mol Biol. 2012 Aug;19(8):760-6. doi: 10.1038/nsmb.2344. Epub 2012 Jul 15.


Stimulation of pri-miR-18a Processing by hnRNP A1.

Michlewski G, Guil S, Cáceres JF.

Adv Exp Med Biol. 2011;700:28-35. Review.


Dhx34 and Nbas function in the NMD pathway and are required for embryonic development in zebrafish.

Anastasaki C, Longman D, Capper A, Patton EE, Cáceres JF.

Nucleic Acids Res. 2011 May;39(9):3686-94. doi: 10.1093/nar/gkq1319. Epub 2011 Jan 11.


Antagonistic role of hnRNP A1 and KSRP in the regulation of let-7a biogenesis.

Michlewski G, Cáceres JF.

Nat Struct Mol Biol. 2010 Aug;17(8):1011-8. doi: 10.1038/nsmb.1874. Epub 2010 Jul 18.


RNase-assisted RNA chromatography.

Michlewski G, Cáceres JF.

RNA. 2010 Aug;16(8):1673-8. doi: 10.1261/rna.2136010. Epub 2010 Jun 22.


An aptamer targeting the apical-loop domain modulates pri-miRNA processing.

Lünse CE, Michlewski G, Hopp CS, Rentmeister A, Cáceres JF, Famulok M, Mayer G.

Angew Chem Int Ed Engl. 2010 Jun 21;49(27):4674-7. doi: 10.1002/anie.200906919. No abstract available.


Stimulation of pri-miR-18a processing by hnRNP A1.

Michlewski G, Guil S, Cáceres JF.

Adv Exp Med Biol. 2010;700:28-35. Review.


Hormonal regulation of microRNA biogenesis.

Macias S, Michlewski G, Cáceres JF.

Mol Cell. 2009 Oct 23;36(2):172-3. doi: 10.1016/j.molcel.2009.10.006.


Editing independent effects of ADARs on the miRNA/siRNA pathways.

Heale BS, Keegan LP, McGurk L, Michlewski G, Brindle J, Stanton CM, Caceres JF, O'Connell MA.

EMBO J. 2009 Oct 21;28(20):3145-56. doi: 10.1038/emboj.2009.244. Epub 2009 Aug 27.


Chapter 7. Nonsense-mediated mRNA decay in Caenorhabditis elegans.

Longman D, Arrisi P, Johnstone IL, Cáceres JF.

Methods Enzymol. 2008;449:149-64. doi: 10.1016/S0076-6879(08)02407-5.


Cellular stress and RNA splicing.

Biamonti G, Caceres JF.

Trends Biochem Sci. 2009 Mar;34(3):146-53. doi: 10.1016/j.tibs.2008.11.004. Epub 2009 Feb 7. Review.


The SR protein family of splicing factors: master regulators of gene expression.

Long JC, Caceres JF.

Biochem J. 2009 Jan 1;417(1):15-27. doi: 10.1042/BJ20081501. Review.


Posttranscriptional regulation of miRNAs harboring conserved terminal loops.

Michlewski G, Guil S, Semple CA, Cáceres JF.

Mol Cell. 2008 Nov 7;32(3):383-93. doi: 10.1016/j.molcel.2008.10.013.


Identification of nuclear and cytoplasmic mRNA targets for the shuttling protein SF2/ASF.

Sanford JR, Coutinho P, Hackett JA, Wang X, Ranahan W, Caceres JF.

PLoS One. 2008 Oct 8;3(10):e3369. doi: 10.1371/journal.pone.0003369.


Spatial mapping of splicing factor complexes involved in exon and intron definition.

Ellis JD, Llères D, Denegri M, Lamond AI, Cáceres JF.

J Cell Biol. 2008 Jun 16;181(6):921-34. doi: 10.1083/jcb.200710051.


The splicing factor SF2/ASF regulates translation initiation by enhancing phosphorylation of 4E-BP1.

Michlewski G, Sanford JR, Cáceres JF.

Mol Cell. 2008 Apr 25;30(2):179-89. doi: 10.1016/j.molcel.2008.03.013.


Division of labor: minor splicing in the cytoplasm.

Caceres JF, Misteli T.

Cell. 2007 Nov 16;131(4):645-7.


Stressful splicing.

Guil S, Cáceres JF.

Mol Cell. 2007 Oct 26;28(2):180-1.


Cdk1 is sufficient to drive the mammalian cell cycle.

Santamaría D, Barrière C, Cerqueira A, Hunt S, Tardy C, Newton K, Cáceres JF, Dubus P, Malumbres M, Barbacid M.

Nature. 2007 Aug 16;448(7155):811-5.


The pathology of pre-mRNA splicing: a meeting in the Italian Alps. Workshop on pre-mRNA processing and disease.

Caceres JF, Krainer AR, Kornblihtt AR.

EMBO Rep. 2007 Aug;8(8):730-4. Epub 2007 Jul 13. No abstract available.


Identification and characterization of RED120: a conserved PWI domain protein with links to splicing and 3'-end formation.

Fortes P, Longman D, McCracken S, Ip JY, Poot R, Mattaj IW, Cáceres JF, Blencowe BJ.

FEBS Lett. 2007 Jun 26;581(16):3087-97. Epub 2007 Jun 4.


The multifunctional RNA-binding protein hnRNP A1 is required for processing of miR-18a.

Guil S, Cáceres JF.

Nat Struct Mol Biol. 2007 Jul;14(7):591-6. Epub 2007 Jun 10.


Mechanistic insights and identification of two novel factors in the C. elegans NMD pathway.

Longman D, Plasterk RH, Johnstone IL, Cáceres JF.

Genes Dev. 2007 May 1;21(9):1075-85. Epub 2007 Apr 16.


hnRNP A1 relocalization to the stress granules reflects a role in the stress response.

Guil S, Long JC, Cáceres JF.

Mol Cell Biol. 2006 Aug;26(15):5744-58.


Concerted regulation of nuclear and cytoplasmic activities of SR proteins by AKT.

Blaustein M, Pelisch F, Tanos T, Muñoz MJ, Wengier D, Quadrana L, Sanford JR, Muschietti JP, Kornblihtt AR, Cáceres JF, Coso OA, Srebrow A.

Nat Struct Mol Biol. 2005 Dec;12(12):1037-44. Epub 2005 Nov 20.


Reversible phosphorylation differentially affects nuclear and cytoplasmic functions of splicing factor 2/alternative splicing factor.

Sanford JR, Ellis JD, Cazalla D, Cáceres JF.

Proc Natl Acad Sci U S A. 2005 Oct 18;102(42):15042-7. Epub 2005 Oct 6.


Proteomic analysis of SRm160-containing complexes reveals a conserved association with cohesin.

McCracken S, Longman D, Marcon E, Moens P, Downey M, Nickerson JA, Jessberger R, Wilde A, Caceres JF, Emili A, Blencowe BJ.

J Biol Chem. 2005 Dec 23;280(51):42227-36. Epub 2005 Sep 13.

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