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Items: 28

1.

Massively Parallel Implementation of Sequence Alignment with Basic Local Alignment Search Tool Using Parallel Computing in Java Library.

Nowicki M, Bzhalava D, BaŁa P.

J Comput Biol. 2018 Aug;25(8):871-881. doi: 10.1089/cmb.2018.0079. Epub 2018 Jul 13.

PMID:
30004240
2.

ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads.

Maarala AI, Bzhalava Z, Dillner J, Heljanko K, Bzhalava D.

Bioinformatics. 2018 Mar 15;34(6):928-935. doi: 10.1093/bioinformatics/btx702.

PMID:
29106455
3.

Viruses in cancers among the immunosuppressed.

Arroyo Mühr LS, Bzhalava Z, Hortlund M, Lagheden C, Nordqvist Kleppe S, Bzhalava D, Hultin E, Dillner J.

Int J Cancer. 2017 Dec 15;141(12):2498-2504. doi: 10.1002/ijc.31017. Epub 2017 Sep 13.

PMID:
28840939
4.

Viruses in case series of tumors: Consistent presence in different cancers in the same subject.

Arroyo Mühr LS, Hortlund M, Bzhalava Z, Nordqvist Kleppe S, Bzhalava D, Hultin E, Dillner J.

PLoS One. 2017 Mar 3;12(3):e0172308. doi: 10.1371/journal.pone.0172308. eCollection 2017.

5.

Cancer risks after solid organ transplantation and after long-term dialysis.

Hortlund M, Arroyo Mühr LS, Storm H, Engholm G, Dillner J, Bzhalava D.

Int J Cancer. 2017 Mar 1;140(5):1091-1101. doi: 10.1002/ijc.30531.

6.

Corrigendum: Detection of DNA viruses in prostate cancer.

Smelov V, Bzhalava D, Mühr LS, Eklund C, Komyakov B, Gorelov A, Dillner J, Hultin E.

Sci Rep. 2016 May 31;6:26267. doi: 10.1038/srep26267. No abstract available.

7.

Detection of DNA viruses in prostate cancer.

Smelov V, Bzhalava D, Arroyo Mühr LS, Eklund C, Komyakov B, Gorelov A, Dillner J, Hultin E.

Sci Rep. 2016 Apr 28;6:25235. doi: 10.1038/srep25235. Erratum in: Sci Rep. 2016 May 31;6:26267.

8.

Does human papillomavirus-negative condylomata exist?

Arroyo Mühr LS, Bzhalava D, Lagheden C, Eklund C, Johansson H, Forslund O, Dillner J, Hultin E.

Virology. 2015 Nov;485:283-8. doi: 10.1016/j.virol.2015.07.023. Epub 2015 Aug 28.

9.

Viremia during pregnancy and risk of childhood leukemia and lymphomas in the offspring: Nested case-control study.

Bzhalava D, Hultin E, Arroyo Mühr LS, Ekström J, Lehtinen M, de Villiers EM, Dillner J.

Int J Cancer. 2016 May 1;138(9):2212-20. doi: 10.1002/ijc.29666. Epub 2015 Jul 14.

10.

Molecular methods for identification and characterization of novel papillomaviruses.

Kocjan BJ, Bzhalava D, Forslund O, Dillner J, Poljak M.

Clin Microbiol Infect. 2015 Sep;21(9):808-16. doi: 10.1016/j.cmi.2015.05.011. Epub 2015 May 21. Review.

11.

International standardization and classification of human papillomavirus types.

Bzhalava D, Eklund C, Dillner J.

Virology. 2015 Feb;476:341-344. doi: 10.1016/j.virol.2014.12.028. Epub 2015 Jan 9.

12.

Human papillomavirus type 197 is commonly present in skin tumors.

Arroyo Mühr LS, Hultin E, Bzhalava D, Eklund C, Lagheden C, Ekström J, Johansson H, Forslund O, Dillner J.

Int J Cancer. 2015 Jun 1;136(11):2546-55. doi: 10.1002/ijc.29325. Epub 2014 Nov 25.

13.

Deep sequencing extends the diversity of human papillomaviruses in human skin.

Bzhalava D, Mühr LS, Lagheden C, Ekström J, Forslund O, Dillner J, Hultin E.

Sci Rep. 2014 Jul 24;4:5807. doi: 10.1038/srep05807.

14.

Recurrent respiratory papillomatosis: HPV genotypes and risk of high-grade laryngeal neoplasia.

Omland T, Lie KA, Akre H, Sandlie LE, Jebsen P, Sandvik L, Nymoen DA, Bzhalava D, Dillner J, Brøndbo K.

PLoS One. 2014 Jun 11;9(6):e99114. doi: 10.1371/journal.pone.0099114. eCollection 2014.

15.

Metagenomic sequencing of expressed prostate secretions.

Smelov V, Arroyo Mühr LS, Bzhalava D, Brown LJ, Komyakov B, Dillner J.

J Med Virol. 2014 Dec;86(12):2042-8. doi: 10.1002/jmv.23900. Epub 2014 Feb 14.

PMID:
24532541
16.

Characterization of three novel human papillomavirus types isolated from oral rinse samples of healthy individuals.

Martin E, Dang J, Bzhalava D, Stern J, Edelstein ZR, Koutsky LA, Kiviat NB, Feng Q.

J Clin Virol. 2014 Jan;59(1):30-7. doi: 10.1016/j.jcv.2013.10.028. Epub 2013 Nov 1.

17.

Diversity of human papillomaviruses in skin lesions.

Ekström J, Mühr LS, Bzhalava D, Söderlund-Strand A, Hultin E, Nordin P, Stenquist B, Paoli J, Forslund O, Dillner J.

Virology. 2013 Dec;447(1-2):300-11. doi: 10.1016/j.virol.2013.09.010. Epub 2013 Oct 10.

18.

Next generation sequencing for human papillomavirus genotyping.

Arroyo LS, Smelov V, Bzhalava D, Eklund C, Hultin E, Dillner J.

J Clin Virol. 2013 Oct;58(2):437-42. doi: 10.1016/j.jcv.2013.07.013. Epub 2013 Aug 8.

PMID:
23932809
19.

A systematic review of the prevalence of mucosal and cutaneous human papillomavirus types.

Bzhalava D, Guan P, Franceschi S, Dillner J, Clifford G.

Virology. 2013 Oct;445(1-2):224-31. doi: 10.1016/j.virol.2013.07.015. Epub 2013 Aug 5. Review.

20.

Unbiased approach for virus detection in skin lesions.

Bzhalava D, Johansson H, Ekström J, Faust H, Möller B, Eklund C, Nordin P, Stenquist B, Paoli J, Persson B, Forslund O, Dillner J.

PLoS One. 2013 Jun 28;8(6):e65953. doi: 10.1371/journal.pone.0065953. Print 2013.

21.

Expressed prostate secretions in the study of human papillomavirus epidemiology in the male.

Smelov V, Eklund C, Bzhalava D, Novikov A, Dillner J.

PLoS One. 2013 Jun 14;8(6):e66630. doi: 10.1371/journal.pone.0066630. Print 2013.

22.

Absence of Epstein-Barr and cytomegalovirus infection in neuroblastoma cells by standard detection methodologies.

Sehic D, Forslund O, Sandén E, Mengelbier LH, Karlsson J, Bzhalava D, Ekström J, Warenholt J, Darabi A, Dillner J, Øra I, Gisselsson D.

Pediatr Blood Cancer. 2013 Sep;60(9):E91-3. doi: 10.1002/pbc.24535. Epub 2013 Apr 9.

PMID:
23572312
23.

Metagenomic sequencing of "HPV-negative" condylomas detects novel putative HPV types.

Johansson H, Bzhalava D, Ekström J, Hultin E, Dillner J, Forslund O.

Virology. 2013 May 25;440(1):1-7. doi: 10.1016/j.virol.2013.01.023. Epub 2013 Mar 22.

24.

Phylogenetically diverse TT virus viremia among pregnant women.

Bzhalava D, Ekström J, Lysholm F, Hultin E, Faust H, Persson B, Lehtinen M, de Villiers EM, Dillner J.

Virology. 2012 Oct 25;432(2):427-34. doi: 10.1016/j.virol.2012.06.022. Epub 2012 Jul 21.

25.

No evidence of enteroviruses in the intestine of patients with type 1 diabetes.

Mercalli A, Lampasona V, Klingel K, Albarello L, Lombardoni C, Ekström J, Sordi V, Bolla A, Mariani A, Bzhalava D, Dillner J, Roivainen M, Bosi E, Piemonti L.

Diabetologia. 2012 Sep;55(9):2479-88. doi: 10.1007/s00125-012-2591-4. Epub 2012 Jun 10.

PMID:
22684312
26.

High throughput sequencing reveals diversity of Human Papillomaviruses in cutaneous lesions.

Ekström J, Bzhalava D, Svenback D, Forslund O, Dillner J.

Int J Cancer. 2011 Dec 1;129(11):2643-50. doi: 10.1002/ijc.26204. Epub 2011 Aug 8.

27.

Risk of second cancers after the diagnosis of Merkel cell carcinoma in Scandinavia.

Bzhalava D, Bray F, Storm H, Dillner J.

Br J Cancer. 2011 Jan 4;104(1):178-80. doi: 10.1038/sj.bjc.6605989. Epub 2010 Nov 16.

28.

No risk of maternal EBV infection for childhood leukemia.

Tedeschi R, Luostarinen T, Marus A, Bzhalava D, Ogmundsdottir HM, Dillner J, De Paoli P, Surcel HM, Pukkala E, Lehtinen M, Lehtinen T.

Cancer Epidemiol Biomarkers Prev. 2009 Oct;18(10):2790-2. doi: 10.1158/1055-9965.EPI-09-0751. Epub 2009 Sep 15.

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