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Items: 37

1.

Cold Storage Increases Albumin and Advanced Glycation-End Product-Albumin Levels in Kidney Transplants: A Possible Cause for Exacerbated Renal Damage.

Lo S, Byrum SD, Tackett AJ, Parajuli N.

Transplant Direct. 2019 May 22;5(6):e454. doi: 10.1097/TXD.0000000000000897. eCollection 2019 Jun.

2.

Exploiting Correlations between Protein Abundance and the Functional Status of saeRS and sarA To Identify Virulence Factors of Potential Importance in the Pathogenesis of Staphylococcus aureus Osteomyelitis.

Ramirez AM, Byrum SD, Beenken KE, Washam C, Edmondson RD, Mackintosh SG, Spencer HJ, Tackett AJ, Smeltzer MS.

ACS Infect Dis. 2019 Nov 26. doi: 10.1021/acsinfecdis.9b00291. [Epub ahead of print]

PMID:
31722523
3.

Continuous Developmental and Early Life Trichloroethylene Exposure Promoted DNA Methylation Alterations in Polycomb Protein Binding Sites in Effector/Memory CD4+ T Cells.

Byrum SD, Washam CL, Patterson JD, Vyas KK, Gilbert KM, Blossom SJ.

Front Immunol. 2019 Aug 28;10:2016. doi: 10.3389/fimmu.2019.02016. eCollection 2019.

4.

Proteomic measures of gamma oscillations.

Byrum SD, Washam CL, Tackett AJ, Garcia-Rill E, Bisagno V, Urbano FJ.

Heliyon. 2019 Aug 28;5(8):e02265. doi: 10.1016/j.heliyon.2019.e02265. eCollection 2019 Aug.

5.

Effect of Sulforaphane and 5-Aza-2'-Deoxycytidine on Melanoma Cell Growth.

Chiang TC, Koss B, Su LJ, Washam CL, Byrum SD, Storey A, Tackett AJ.

Medicines (Basel). 2019 Jun 27;6(3). pii: E71. doi: 10.3390/medicines6030071.

6.

Characterization of mouse ocular response to a 35-day spaceflight mission: Evidence of blood-retinal barrier disruption and ocular adaptations.

Mao XW, Nishiyama NC, Byrum SD, Stanbouly S, Jones T, Drew A, Sridharan V, Boerma M, Tackett AJ, Zawieja D, Willey JS, Delp M, Pecaut MJ.

Sci Rep. 2019 Jun 3;9(1):8215. doi: 10.1038/s41598-019-44696-0.

7.

Musashi interaction with poly(A)-binding protein is required for activation of target mRNA translation.

Cragle CE, MacNicol MC, Byrum SD, Hardy LL, Mackintosh SG, Richardson WA, Gray NK, Childs GV, Tackett AJ, MacNicol AM.

J Biol Chem. 2019 Jul 12;294(28):10969-10986. doi: 10.1074/jbc.RA119.007220. Epub 2019 May 31.

PMID:
31152063
8.

Local and Relayed Effects of Deep Brain Stimulation of the Pedunculopontine Nucleus.

Garcia-Rill E, Tackett AJ, Byrum SD, Lan RS, Mackintosh SG, Hyde JR, Bisagno V, Urbano FJ.

Brain Sci. 2019 Mar 18;9(3). pii: E64. doi: 10.3390/brainsci9030064. Review.

9.

Proteomic characterization of the arsenic response locus in S. cerevisiae.

West KL, Byrum SD, Mackintosh SG, Edmondson RD, Taverna SD, Tackett AJ.

Epigenetics. 2019 Feb;14(2):130-145. doi: 10.1080/15592294.2019.1580110. Epub 2019 Mar 1.

PMID:
30739529
10.

Metaproteomics reveals potential mechanisms by which dietary resistant starch supplementation attenuates chronic kidney disease progression in rats.

Zybailov BL, Glazko GV, Rahmatallah Y, Andreyev DS, McElroy T, Karaduta O, Byrum SD, Orr L, Tackett AJ, Mackintosh SG, Edmondson RD, Kieffer DA, Martin RJ, Adams SH, Vaziri ND, Arthur JM.

PLoS One. 2019 Jan 30;14(1):e0199274. doi: 10.1371/journal.pone.0199274. eCollection 2019.

11.

Loss of E-Cadherin Inhibits CD103 Antitumor Activity and Reduces Checkpoint Blockade Responsiveness in Melanoma.

Shields BD, Koss B, Taylor EM, Storey AJ, West KL, Byrum SD, Mackintosh SG, Edmondson R, Mahmoud F, Shalin SC, Tackett AJ.

Cancer Res. 2019 Mar 15;79(6):1113-1123. doi: 10.1158/0008-5472.CAN-18-1722. Epub 2019 Jan 23.

PMID:
30674537
12.

RNA-Seq Analysis of Spinal Cord Tissues from hPFN1G118V Transgenic Mouse Model of ALS at Pre-symptomatic and End-Stages of Disease.

Barham C, Fil D, Byrum SD, Rahmatallah Y, Glazko G, Kiaei M.

Sci Rep. 2018 Sep 13;8(1):13737. doi: 10.1038/s41598-018-31132-y.

13.

Label-Free Proteomic Approach to Characterize Protease-Dependent and -Independent Effects of sarA Inactivation on the Staphylococcus aureus Exoproteome.

Byrum SD, Loughran AJ, Beenken KE, Orr LM, Storey AJ, Mackintosh SG, Edmondson RD, Tackett AJ, Smeltzer MS.

J Proteome Res. 2018 Oct 5;17(10):3384-3395. doi: 10.1021/acs.jproteome.8b00288. Epub 2018 Sep 27.

14.

Proteomic Changes in Mouse Spleen after Radiation-Induced Injury and its Modulation by Gamma-Tocotrienol.

Cheema AK, Byrum SD, Sharma NK, Altadill T, Kumar VP, Biswas S, Balgley BM, Hauer-Jensen M, Tackett AJ, Ghosh SP.

Radiat Res. 2018 Nov;190(5):449-463. doi: 10.1667/RR15008.1. Epub 2018 Aug 2.

15.

Vulvar squamous cell carcinoma aggressiveness is associated with differential expression of collagen and STAT1.

Holthoff ER, Byrum SD, Mackintosh SG, Kelly T, Tackett AJ, Quick CM, Post SR.

Clin Proteomics. 2017 Dec 6;14:40. doi: 10.1186/s12014-017-9175-8. eCollection 2017.

16.

Indicators of responsiveness to immune checkpoint inhibitors.

Shields BD, Mahmoud F, Taylor EM, Byrum SD, Sengupta D, Koss B, Baldini G, Ransom S, Cline K, Mackintosh SG, Edmondson RD, Shalin S, Tackett AJ.

Sci Rep. 2017 Apr 11;7(1):807. doi: 10.1038/s41598-017-01000-2.

17.

Time- and radiation-dose dependent changes in the plasma proteome after total body irradiation of non-human primates: Implications for biomarker selection.

Byrum SD, Burdine MS, Orr L, Mackintosh SG, Authier S, Pouliot M, Hauer-Jensen M, Tackett AJ.

PLoS One. 2017 Mar 28;12(3):e0174771. doi: 10.1371/journal.pone.0174771. eCollection 2017.

18.

1,3-Butadiene-induced mitochondrial dysfunction is correlated with mitochondrial CYP2E1 activity in Collaborative Cross mice.

Hartman JH, Miller GP, Caro AA, Byrum SD, Orr LM, Mackintosh SG, Tackett AJ, MacMillan-Crow LA, Hallberg LM, Ameredes BT, Boysen G.

Toxicology. 2017 Mar 1;378:114-124. doi: 10.1016/j.tox.2017.01.005. Epub 2017 Jan 9.

19.

Impact of sarA and Phenol-Soluble Modulins on the Pathogenesis of Osteomyelitis in Diverse Clinical Isolates of Staphylococcus aureus.

Loughran AJ, Gaddy D, Beenken KE, Meeker DG, Morello R, Zhao H, Byrum SD, Tackett AJ, Cassat JE, Smeltzer MS.

Infect Immun. 2016 Aug 19;84(9):2586-94. doi: 10.1128/IAI.00152-16. Print 2016 Sep.

20.

ATXN7L3 and ENY2 Coordinate Activity of Multiple H2B Deubiquitinases Important for Cellular Proliferation and Tumor Growth.

Atanassov BS, Mohan RD, Lan X, Kuang X, Lu Y, Lin K, McIvor E, Li W, Zhang Y, Florens L, Byrum SD, Mackintosh SG, Calhoun-Davis T, Koutelou E, Wang L, Tang DG, Tackett AJ, Washburn MP, Workman JL, Dent SY.

Mol Cell. 2016 May 19;62(4):558-71. doi: 10.1016/j.molcel.2016.03.030. Epub 2016 Apr 28.

21.

DNA methylation on N(6)-adenine in mammalian embryonic stem cells.

Wu TP, Wang T, Seetin MG, Lai Y, Zhu S, Lin K, Liu Y, Byrum SD, Mackintosh SG, Zhong M, Tackett A, Wang G, Hon LS, Fang G, Swenberg JA, Xiao AZ.

Nature. 2016 Apr 21;532(7599):329-33. doi: 10.1038/nature17640. Epub 2016 Mar 30.

22.

A Quantitative Proteomic Analysis of Urine from Gamma-Irradiated Non-Human Primates.

Byrum SD, Burdine MS, Orr L, Moreland L, Mackintosh SG, Authier S, Pouliot M, Hauer-Jensen M, Tackett AJ.

J Proteomics Bioinform. 2016;9(Suppl 10). pii: 005. Epub 2015 Dec 28.

23.

Quantitative Histone Mass Spectrometry Identifies Elevated Histone H3 Lysine 27 (Lys27) Trimethylation in Melanoma.

Sengupta D, Byrum SD, Avaritt NL, Davis L, Shields B, Mahmoud F, Reynolds M, Orr LM, Mackintosh SG, Shalin SC, Tackett AJ.

Mol Cell Proteomics. 2016 Mar;15(3):765-75. doi: 10.1074/mcp.M115.053363. Epub 2015 Nov 30.

24.

Identification of Viral and Host Proteins That Interact with Murine Gammaherpesvirus 68 Latency-Associated Nuclear Antigen during Lytic Replication: a Role for Hsc70 in Viral Replication.

Salinas E, Byrum SD, Moreland LE, Mackintosh SG, Tackett AJ, Forrest JC.

J Virol. 2015 Nov 18;90(3):1397-413. doi: 10.1128/JVI.02022-15. Print 2016 Feb 1.

25.

Purification of specific chromatin loci for proteomic analysis.

Byrum SD, Taverna SD, Tackett AJ.

Methods Mol Biol. 2015;1228:83-92. doi: 10.1007/978-1-4939-1680-1_8.

26.

A Proteomic Study of Human Merkel Cell Carcinoma.

Shao Q, Byrum SD, Moreland LE, Mackintosh SG, Kannan A, Lin Z, Morgan M, Stack BC Jr, Cornelius LA, Tackett AJ, Gao L.

J Proteomics Bioinform. 2013 Nov 25;6:275-282.

27.

A CRISPR-based approach for proteomic analysis of a single genomic locus.

Waldrip ZJ, Byrum SD, Storey AJ, Gao J, Byrd AK, Mackintosh SG, Wahls WP, Taverna SD, Raney KD, Tackett AJ.

Epigenetics. 2014 Sep;9(9):1207-11. doi: 10.4161/epi.29919. Epub 2014 Jul 18.

28.

A PWWP domain-containing protein targets the NuA3 acetyltransferase complex via histone H3 lysine 36 trimethylation to coordinate transcriptional elongation at coding regions.

Gilbert TM, McDaniel SL, Byrum SD, Cades JA, Dancy BC, Wade H, Tackett AJ, Strahl BD, Taverna SD.

Mol Cell Proteomics. 2014 Nov;13(11):2883-95. doi: 10.1074/mcp.M114.038224. Epub 2014 Aug 6.

29.

TBX2 blocks myogenesis and promotes proliferation in rhabdomyosarcoma cells.

Zhu B, Zhang M, Byrum SD, Tackett AJ, Davie JK.

Int J Cancer. 2014 Aug 15;135(4):785-97. doi: 10.1002/ijc.28721. Epub 2014 Jan 27.

30.

Mitotic phosphorylation of histone H3 threonine 80.

Hammond SL, Byrum SD, Namjoshi S, Graves HK, Dennehey BK, Tackett AJ, Tyler JK.

Cell Cycle. 2014;13(3):440-52. doi: 10.4161/cc.27269. Epub 2013 Nov 25.

31.

Purification of a specific native genomic locus for proteomic analysis.

Byrum SD, Taverna SD, Tackett AJ.

Nucleic Acids Res. 2013 Nov;41(20):e195. doi: 10.1093/nar/gkt822. Epub 2013 Sep 11.

32.

Quantitative Proteomics Identifies Activation of Hallmark Pathways of Cancer in Patient Melanoma.

Byrum SD, Larson SK, Avaritt NL, Moreland LE, Mackintosh SG, Cheung WL, Tackett AJ.

J Proteomics Bioinform. 2013 Mar 1;6(3):43-50.

33.

Identification of PTHrP(12-48) as a plasma biomarker associated with breast cancer bone metastasis.

Washam CL, Byrum SD, Leitzel K, Ali SM, Tackett AJ, Gaddy D, Sundermann SE, Lipton A, Suva LJ.

Cancer Epidemiol Biomarkers Prev. 2013 May;22(5):972-83. doi: 10.1158/1055-9965.EPI-12-1318-T. Epub 2013 Mar 5.

34.

Myogenin recruits the histone chaperone facilitates chromatin transcription (FACT) to promote nucleosome disassembly at muscle-specific genes.

Lolis AA, Londhe P, Beggs BC, Byrum SD, Tackett AJ, Davie JK.

J Biol Chem. 2013 Mar 15;288(11):7676-87. doi: 10.1074/jbc.M112.426718. Epub 2013 Jan 30.

35.

ChAP-MS: a method for identification of proteins and histone posttranslational modifications at a single genomic locus.

Byrum SD, Raman A, Taverna SD, Tackett AJ.

Cell Rep. 2012 Jul 26;2(1):198-205. doi: 10.1016/j.celrep.2012.06.019. Epub 2012 Jul 20.

36.

Proteomic technologies for the study of osteosarcoma.

Byrum SD, Washam CL, Montgomery CO, Tackett AJ, Suva LJ.

Sarcoma. 2012;2012:169416. doi: 10.1155/2012/169416. Epub 2012 Mar 6.

37.

Quantitative analysis of histone exchange for transcriptionally active chromatin.

Byrum SD, Taverna SD, Tackett AJ.

J Clin Bioinforma. 2011 Jul 7;1(1):17. doi: 10.1186/2043-9113-1-17.

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