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Items: 16

1.

Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation.

Janbon G, Ormerod KL, Paulet D, Byrnes EJ 3rd, Yadav V, Chatterjee G, Mullapudi N, Hon CC, Billmyre RB, Brunel F, Bahn YS, Chen W, Chen Y, Chow EW, Coppée JY, Floyd-Averette A, Gaillardin C, Gerik KJ, Goldberg J, Gonzalez-Hilarion S, Gujja S, Hamlin JL, Hsueh YP, Ianiri G, Jones S, Kodira CD, Kozubowski L, Lam W, Marra M, Mesner LD, Mieczkowski PA, Moyrand F, Nielsen K, Proux C, Rossignol T, Schein JE, Sun S, Wollschlaeger C, Wood IA, Zeng Q, Neuvéglise C, Newlon CS, Perfect JR, Lodge JK, Idnurm A, Stajich JE, Kronstad JW, Sanyal K, Heitman J, Fraser JA, Cuomo CA, Dietrich FS.

PLoS Genet. 2014 Apr 17;10(4):e1004261. doi: 10.1371/journal.pgen.1004261. eCollection 2014 Apr.

2.

Transmission of Hypervirulence traits via sexual reproduction within and between lineages of the human fungal pathogen cryptococcus gattii.

Voelz K, Ma H, Phadke S, Byrnes EJ, Zhu P, Mueller O, Farrer RA, Henk DA, Lewit Y, Hsueh YP, Fisher MC, Idnurm A, Heitman J, May RC.

PLoS Genet. 2013;9(9):e1003771. doi: 10.1371/journal.pgen.1003771. Epub 2013 Sep 5.

3.

Development of an aerosol model of Cryptococcus reveals humidity as an important factor affecting the viability of Cryptococcus during aerosolization.

Springer DJ, Saini D, Byrnes EJ, Heitman J, Frothingham R.

PLoS One. 2013 Jul 23;8(7):e69804. doi: 10.1371/journal.pone.0069804. Print 2013.

4.

A unique chromosomal rearrangement in the Cryptococcus neoformans var. grubii type strain enhances key phenotypes associated with virulence.

Morrow CA, Lee IR, Chow EW, Ormerod KL, Goldinger A, Byrnes EJ 3rd, Nielsen K, Heitman J, Schirra HJ, Fraser JA.

MBio. 2012 Feb 28;3(2). pii: e00310-11. doi: 10.1128/mBio.00310-11. Print 2012.

5.

A diverse population of Cryptococcus gattii molecular type VGIII in southern Californian HIV/AIDS patients.

Byrnes EJ 3rd, Li W, Ren P, Lewit Y, Voelz K, Fraser JA, Dietrich FS, May RC, Chaturvedi S, Chaturvedi V, Heitman J.

PLoS Pathog. 2011 Sep;7(9):e1002205. doi: 10.1371/journal.ppat.1002205. Epub 2011 Sep 1. Erratum in: PLoS Pathog. 2011 Nov;7(11). doi:10.1371/annotation/a23709b0-8d67-4b57-aa05-d5d70d830724. Chatuverdi, Sudha [corrected to Chaturvedi, Sudha]; Chatuverdi, Vishnu [corrected to Chaturvedi, Vishnu].

6.

Cryptococcus gattii genotype VGI infection in New England.

McCulloh RJ, Phillips R, Perfect JR, Byrnes EJ 3rd, Heitman J, Dufort E.

Pediatr Infect Dis J. 2011 Dec;30(12):1111-4. doi: 10.1097/INF.0b013e31822d14fd.

7.

Cryptococcus gattii: an emerging fungal pathogen infecting humans and animals.

Byrnes EJ 3rd, Bartlett KH, Perfect JR, Heitman J.

Microbes Infect. 2011 Oct;13(11):895-907. doi: 10.1016/j.micinf.2011.05.009. Epub 2011 Jun 1. Review.

8.

The Outbreak of Cryptococcus gattii in Western North America: Epidemiology and Clinical Issues.

Byrnes EJ 3rd, Marr KA.

Curr Infect Dis Rep. 2011 Jun;13(3):256-61. doi: 10.1007/s11908-011-0181-0.

9.

Divergent and nonuniform gene expression patterns in mouse brain.

Morris JA, Royall JJ, Bertagnolli D, Boe AF, Burnell JJ, Byrnes EJ, Copeland C, Desta T, Fischer SR, Goldy J, Glattfelder KJ, Kidney JM, Lemon T, Orta GJ, Parry SE, Pathak SD, Pearson OC, Reding M, Shapouri S, Smith KA, Soden C, Solan BM, Weller J, Takahashi JS, Overly CC, Lein ES, Hawrylycz MJ, Hohmann JG, Jones AR.

Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):19049-54. doi: 10.1073/pnas.1003732107. Epub 2010 Oct 18.

10.

Emergence and pathogenicity of highly virulent Cryptococcus gattii genotypes in the northwest United States.

Byrnes EJ 3rd, Li W, Lewit Y, Ma H, Voelz K, Ren P, Carter DA, Chaturvedi V, Bildfell RJ, May RC, Heitman J.

PLoS Pathog. 2010 Apr 22;6(4):e1000850. doi: 10.1371/journal.ppat.1000850.

11.

Cryptococcus gattii outbreak expands into the Northwestern United States with fatal consequences.

Byrnes EJ, Heitman J.

F1000 Biol Rep. 2009 Aug 17;1. pii: 62. doi: 10.3410/B1-62.

12.

First reported case of Cryptococcus gattii in the Southeastern USA: implications for travel-associated acquisition of an emerging pathogen.

Byrnes EJ 3rd, Li W, Lewit Y, Perfect JR, Carter DA, Cox GM, Heitman J.

PLoS One. 2009 Jun 10;4(6):e5851. doi: 10.1371/journal.pone.0005851.

13.

Molecular evidence that the range of the Vancouver Island outbreak of Cryptococcus gattii infection has expanded into the Pacific Northwest in the United States.

Byrnes EJ 3rd, Bildfell RJ, Frank SA, Mitchell TG, Marr KA, Heitman J.

J Infect Dis. 2009 Apr 1;199(7):1081-6. doi: 10.1086/597306.

14.

Cryptococcus gattii with bimorphic colony types in a dog in western Oregon: additional evidence for expansion of the Vancouver Island outbreak.

Byrnes EJ 3rd, Bildfell RJ, Dearing PL, Valentine BA, Heitman J.

J Vet Diagn Invest. 2009 Jan;21(1):133-6.

15.

Microsporidia evolved from ancestral sexual fungi.

Lee SC, Corradi N, Byrnes EJ 3rd, Torres-Martinez S, Dietrich FS, Keeling PJ, Heitman J.

Curr Biol. 2008 Nov 11;18(21):1675-9. doi: 10.1016/j.cub.2008.09.030. Epub 2008 Oct 30.

16.

Genome-wide atlas of gene expression in the adult mouse brain.

Lein ES, Hawrylycz MJ, Ao N, Ayres M, Bensinger A, Bernard A, Boe AF, Boguski MS, Brockway KS, Byrnes EJ, Chen L, Chen L, Chen TM, Chin MC, Chong J, Crook BE, Czaplinska A, Dang CN, Datta S, Dee NR, Desaki AL, Desta T, Diep E, Dolbeare TA, Donelan MJ, Dong HW, Dougherty JG, Duncan BJ, Ebbert AJ, Eichele G, Estin LK, Faber C, Facer BA, Fields R, Fischer SR, Fliss TP, Frensley C, Gates SN, Glattfelder KJ, Halverson KR, Hart MR, Hohmann JG, Howell MP, Jeung DP, Johnson RA, Karr PT, Kawal R, Kidney JM, Knapik RH, Kuan CL, Lake JH, Laramee AR, Larsen KD, Lau C, Lemon TA, Liang AJ, Liu Y, Luong LT, Michaels J, Morgan JJ, Morgan RJ, Mortrud MT, Mosqueda NF, Ng LL, Ng R, Orta GJ, Overly CC, Pak TH, Parry SE, Pathak SD, Pearson OC, Puchalski RB, Riley ZL, Rockett HR, Rowland SA, Royall JJ, Ruiz MJ, Sarno NR, Schaffnit K, Shapovalova NV, Sivisay T, Slaughterbeck CR, Smith SC, Smith KA, Smith BI, Sodt AJ, Stewart NN, Stumpf KR, Sunkin SM, Sutram M, Tam A, Teemer CD, Thaller C, Thompson CL, Varnam LR, Visel A, Whitlock RM, Wohnoutka PE, Wolkey CK, Wong VY, Wood M, Yaylaoglu MB, Young RC, Youngstrom BL, Yuan XF, Zhang B, Zwingman TA, Jones AR.

Nature. 2007 Jan 11;445(7124):168-76. Epub 2006 Dec 6.

PMID:
17151600

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