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Items: 39

1.

Genomic diversity and meiotic recombination among isolates of the biotech yeast Komagataella phaffii (Pichia pastoris).

Braun-Galleani S, Dias JA, Coughlan AY, Ryan AP, Byrne KP, Wolfe KH.

Microb Cell Fact. 2019 Dec 4;18(1):211. doi: 10.1186/s12934-019-1260-4.

2.

Draft Genome Sequence of the Birch Tree Fungal Pathogen Taphrina betulina UCD315.

Heneghan P, Ryan AP, Nimmo D, Duggan C, Kumar P, O'Gaora P, Ó 'Cinnéide E, Byrne KP, Wolfe KH, O'Brien CE, Butler G.

Microbiol Resour Announc. 2019 Nov 27;8(48). pii: e01255-19. doi: 10.1128/MRA.01255-19.

3.

Draft Genome Sequences of Two Isolates of the Yeast Kazachstania servazzii Recovered from Soil in Ireland.

Faherty L, Lewis C, McElheron M, Garvey N, Duggan R, Shovlin B, Ó Cróinín T, Byrne KP, O'Brien CE, Wolfe KH, Butler G.

Microbiol Resour Announc. 2019 Oct 31;8(44). pii: e01257-19. doi: 10.1128/MRA.01257-19.

4.

Draft Genome Sequence of a Red Basidiomycete Yeast, Symmetrospora coprosmae Strain UCD350, Isolated from Soil in Ireland.

Almasoud J, McArdle L, Henne R, Mathews K, O'Connor Í, McLoughlin LE, Ó'Gaora P, Byrne KP, O'Brien CE, Wolfe KH, Butler G.

Microbiol Resour Announc. 2019 Oct 31;8(44). pii: e01256-19. doi: 10.1128/MRA.01256-19.

5.

The Methylotroph Gene Order Browser (MGOB) reveals conserved synteny and ancestral centromere locations in the yeast family Pichiaceae.

Douglass AP, Byrne KP, Wolfe KH.

FEMS Yeast Res. 2019 Sep 1;19(6). pii: foz058. doi: 10.1093/femsyr/foz058.

PMID:
31397853
6.

The CYPome of the model xenobiotic-biotransforming fungus Cunninghamella elegans.

Palmer-Brown W, Miranda-CasoLuengo R, Wolfe KH, Byrne KP, Murphy CD.

Sci Rep. 2019 Jun 25;9(1):9240. doi: 10.1038/s41598-019-45706-x.

7.

Cytoreductive surgery with hyperthermic intraperitoneal chemotherapy - perioperative management at Waikato Hospital.

Davis SJ, Byrne KP.

Anaesth Intensive Care. 2019 Jan;47(1):100-101. doi: 10.1177/0310057X18811993. Epub 2019 Feb 13. No abstract available.

PMID:
30864484
8.

Coverage-Versus-Length Plots, a Simple Quality Control Step for de Novo Yeast Genome Sequence Assemblies.

Douglass AP, O'Brien CE, Offei B, Coughlan AY, Ortiz-Merino RA, Butler G, Byrne KP, Wolfe KH.

G3 (Bethesda). 2019 Mar 7;9(3):879-887. doi: 10.1534/g3.118.200745.

9.

Comparative Analysis of Oomycete Genome Evolution Using the Oomycete Gene Order Browser (OGOB).

McGowan J, Byrne KP, Fitzpatrick DA.

Genome Biol Evol. 2019 Jan 1;11(1):189-206. doi: 10.1093/gbe/evy267.

10.

Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names.

Douglass AP, Offei B, Braun-Galleani S, Coughlan AY, Martos AAR, Ortiz-Merino RA, Byrne KP, Wolfe KH.

PLoS Pathog. 2018 Jul 19;14(7):e1007138. doi: 10.1371/journal.ppat.1007138. eCollection 2018 Jul.

11.

Draft Genome Sequence of the Yeast Nadsonia starkeyi-henricii UCD142, Isolated from Forest Soil in Ireland.

O'Boyle S, Bergin SA, Hussey ÉE, McLaughlin AD, Riddell LR, Byrne KP, Wolfe KH, O'Brien CE, Butler G.

Genome Announc. 2018 Jun 21;6(25). pii: e00549-18. doi: 10.1128/genomeA.00549-18.

12.

Transcriptional Response to Lactic Acid Stress in the Hybrid Yeast Zygosaccharomyces parabailii.

Ortiz-Merino RA, Kuanyshev N, Byrne KP, Varela JA, Morrissey JP, Porro D, Wolfe KH, Branduardi P.

Appl Environ Microbiol. 2018 Feb 14;84(5). pii: e02294-17. doi: 10.1128/AEM.02294-17. Print 2018 Mar 1.

13.

Flip/flop mating-type switching in the methylotrophic yeast Ogataea polymorpha is regulated by an Efg1-Rme1-Ste12 pathway.

Hanson SJ, Byrne KP, Wolfe KH.

PLoS Genet. 2017 Nov 27;13(11):e1007092. doi: 10.1371/journal.pgen.1007092. eCollection 2017 Nov.

14.

Plasma levels of local anaesthetic following supraclavicular block.

Byrne KP, Dillane D, Tsui BC.

Eur J Anaesthesiol. 2017 Sep;34(9):628-629. doi: 10.1097/EJA.0000000000000635. No abstract available.

PMID:
28763318
15.

Evolutionary restoration of fertility in an interspecies hybrid yeast, by whole-genome duplication after a failed mating-type switch.

Ortiz-Merino RA, Kuanyshev N, Braun-Galleani S, Byrne KP, Porro D, Branduardi P, Wolfe KH.

PLoS Biol. 2017 May 16;15(5):e2002128. doi: 10.1371/journal.pbio.2002128. eCollection 2017 May.

16.

Centromeres of the Yeast Komagataella phaffii (Pichia pastoris) Have a Simple Inverted-Repeat Structure.

Coughlan AY, Hanson SJ, Byrne KP, Wolfe KH.

Genome Biol Evol. 2016 Aug 27;8(8):2482-92. doi: 10.1093/gbe/evw178.

17.

Clade- and species-specific features of genome evolution in the Saccharomycetaceae.

Wolfe KH, Armisén D, Proux-Wera E, ÓhÉigeartaigh SS, Azam H, Gordon JL, Byrne KP.

FEMS Yeast Res. 2015 Aug;15(5):fov035. doi: 10.1093/femsyr/fov035. Epub 2015 Jun 10.

18.

Mating-type switching by chromosomal inversion in methylotrophic yeasts suggests an origin for the three-locus Saccharomyces cerevisiae system.

Hanson SJ, Byrne KP, Wolfe KH.

Proc Natl Acad Sci U S A. 2014 Nov 11;111(45):E4851-8. doi: 10.1073/pnas.1416014111. Epub 2014 Oct 27.

19.

SearchDOGS bacteria, software that provides automated identification of potentially missed genes in annotated bacterial genomes.

Óhéigeartaigh SS, Armisén D, Byrne KP, Wolfe KH.

J Bacteriol. 2014 Jun;196(11):2030-42. doi: 10.1128/JB.01368-13. Epub 2014 Mar 21.

20.

Force of removal for untunnelled, tunnelled and double-tunnelled peripheral nerve catheters.

Byrne KP, Freeman VY.

Anaesthesia. 2014 Mar;69(3):245-8. doi: 10.1111/anae.12538. Epub 2014 Jan 21.

21.

Comparative genome analysis and gene finding in Candida species using CGOB.

Maguire SL, ÓhÉigeartaigh SS, Byrne KP, Schröder MS, O'Gaora P, Wolfe KH, Butler G.

Mol Biol Evol. 2013 Jun;30(6):1281-91. doi: 10.1093/molbev/mst042. Epub 2013 Mar 13.

22.

Evolutionary mobility of the ribosomal DNA array in yeasts.

Proux-Wéra E, Byrne KP, Wolfe KH.

Genome Biol Evol. 2013;5(3):525-31. doi: 10.1093/gbe/evt022.

23.

A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach.

Proux-Wéra E, Armisén D, Byrne KP, Wolfe KH.

BMC Bioinformatics. 2012 Sep 17;13:237. doi: 10.1186/1471-2105-13-237.

24.

Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents.

Gordon JL, Armisén D, Proux-Wéra E, ÓhÉigeartaigh SS, Byrne KP, Wolfe KH.

Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):20024-9. doi: 10.1073/pnas.1112808108. Epub 2011 Nov 28.

25.

Mechanisms of chromosome number evolution in yeast.

Gordon JL, Byrne KP, Wolfe KH.

PLoS Genet. 2011 Jul;7(7):e1002190. doi: 10.1371/journal.pgen.1002190. Epub 2011 Jul 21.

26.

Systematic discovery of unannotated genes in 11 yeast species using a database of orthologous genomic segments.

OhÉigeartaigh SS, Armisén D, Byrne KP, Wolfe KH.

BMC Genomics. 2011 Jul 26;12:377. doi: 10.1186/1471-2164-12-377.

27.

Survey of phantom limb pain, phantom sensation and stump pain in Cambodian and New Zealand amputees.

Byrne KP.

Pain Med. 2011 May;12(5):794-8. doi: 10.1111/j.1526-4637.2011.01105.x. Epub 2011 Apr 11.

PMID:
21481173
28.

Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser.

Fitzpatrick DA, O'Gaora P, Byrne KP, Butler G.

BMC Genomics. 2010 May 10;11:290. doi: 10.1186/1471-2164-11-290.

29.

Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome.

Gordon JL, Byrne KP, Wolfe KH.

PLoS Genet. 2009 May;5(5):e1000485. doi: 10.1371/journal.pgen.1000485. Epub 2009 May 15.

30.

Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication.

Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M, Wolfe KH.

Proc Natl Acad Sci U S A. 2007 May 15;104(20):8397-402. Epub 2007 May 9.

32.

Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts.

Scannell DR, Byrne KP, Gordon JL, Wong S, Wolfe KH.

Nature. 2006 Mar 16;440(7082):341-5.

PMID:
16541074
33.

Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser.

Byrne KP, Wolfe KH.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D452-5.

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Use of human immunoglobulin for treatment of severe erythema multiforme in a cat.

Byrne KP, Giger U.

J Am Vet Med Assoc. 2002 Jan 15;220(2):197-201, 183-4.

PMID:
12126130
38.

Metabolic epidermal necrosis-hepatocutaneous syndrome.

Byrne KP.

Vet Clin North Am Small Anim Pract. 1999 Nov;29(6):1337-55. Review.

PMID:
10563004
39.

Eosinophilic dermatitis with edema in nine dogs, compared with eosinophilic cellulitis in humans.

Holm KS, Morris DO, Gomez SM, Peikes H, Byrne KP, Goldschmidt MH.

J Am Vet Med Assoc. 1999 Sep 1;215(5):649-53.

PMID:
10476711

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