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Arterial and venous blood gases in exacerbations of chronic obstructive pulmonary disease.

Byrne AL, Bennett MH, Chatterji R, Symons R, Thomas PS.

Intern Med J. 2020 Jan;50(1):133-134. doi: 10.1111/imj.14692. No abstract available.


Dynamics of human monocytes and airway macrophages during healthy aging and after transplant.

Byrne AJ, Powell JE, O'Sullivan BJ, Ogger PP, Hoffland A, Cook J, Bonner KL, Hewitt RJ, Wolf S, Ghai P, Walker SA, Lukowski SW, Molyneaux PL, Saglani S, Chambers DC, Maher TM, Lloyd CM.

J Exp Med. 2020 Mar 2;217(3). pii: e20191236. doi: 10.1084/jem.20191236.


Scaphoid fractures: has magnetic resonance imaging become a cost-effective alternative to definitive diagnosis?

Davey M, Feeley I, Hayes J, Grant-Freemantle M, Gaafar M, Pauzenberger L, Byrne AM, Mullett H.

Ir J Med Sci. 2020 Jan 7. doi: 10.1007/s11845-020-02169-8. [Epub ahead of print]


Behavioral evolution contributes to hindbrain diversification among Lake Malawi cichlid fish.

York RA, Byrne A, Abdilleh K, Patil C, Streelman T, Finger TE, Fernald RD.

Sci Rep. 2019 Dec 27;9(1):19994. doi: 10.1038/s41598-019-55894-1.


Use of GeneXpert MTB/RIF® on a single pooled sputum specimen to exclude pulmonary tuberculosis among hospital inpatients placed in respiratory isolation.

Yeong C, Byrne AL, Cho JG, Sintchenko V, Crighton T, Marais BJ.

Int J Infect Dis. 2019 Dec 24. pii: S1201-9712(19)30497-7. doi: 10.1016/j.ijid.2019.12.024. [Epub ahead of print]


Palliative Care Evidence Review Service (PaCERS): a knowledge transfer partnership.

Mann M, Woodward A, Nelson A, Byrne A.

Health Res Policy Syst. 2019 Dec 16;17(1):100. doi: 10.1186/s12961-019-0504-4.


Implementing Patient-Derived Xenografts to Assess the Effectiveness of Cyclin-Dependent Kinase Inhibitors in Glioblastoma.

Noonan JJ, Jarzabek M, Lincoln FA, Cavanagh BL, Pariag AR, Juric V, Young LS, Ligon KL, Jahns H, Zheleva D, Prehn JHM, Rehm M, Byrne AT, Murphy BM.

Cancers (Basel). 2019 Dec 12;11(12). pii: E2005. doi: 10.3390/cancers11122005.


Diffusion tensor imaging in neonatal encephalopathy: a systematic review.

Dibble M, O'Dea MI, Hurley T, Byrne A, Colleran G, Molloy EJ, Bokde ALW.

Arch Dis Child Fetal Neonatal Ed. 2019 Dec 10. pii: fetalneonatal-2019-318025. doi: 10.1136/archdischild-2019-318025. [Epub ahead of print] Review.


Impact of the 2016 World Health Organization Classification of Tumours of the Central Nervous System: an Irish experience.

Fearon C, Loftus T, Byrne AL, Heffernan J, Cooney M, Heeney C, Walsh A, Lorigan J, Beausang A, Cryan J, Farrell M, Brett F.

Ir J Med Sci. 2019 Dec 4. doi: 10.1007/s11845-019-02144-y. [Epub ahead of print] Review.


Longitudinal dynamics of herd-level Mycobacterium bovis MLVA type surveillance in cattle in Northern Ireland 2003-2016.

Skuce R, Breadon E, Allen A, Milne G, McCormick C, Hughes C, Rutherford D, Smith G, Thompson S, Graham J, Harwood R, Byrne A.

Infect Genet Evol. 2019 Nov 29;79:104131. doi: 10.1016/j.meegid.2019.104131. [Epub ahead of print]


Next generation neural mass and field modelling.

Byrne Á, O'Dea R, Forrester M, Ross J, Coombes S.

J Neurophysiol. 2019 Nov 27. doi: 10.1152/jn.00406.2019. [Epub ahead of print]


Lurasidone compared to other atypical antipsychotic monotherapies for adolescent schizophrenia: a systematic literature review and network meta-analysis.

Arango C, Ng-Mak D, Finn E, Byrne A, Loebel A.

Eur Child Adolesc Psychiatry. 2019 Nov 22. doi: 10.1007/s00787-019-01425-2. [Epub ahead of print]


Identification and targeted management of a neurodegenerative disorder caused by biallelic mutations in SLC5A6.

Byrne AB, Arts P, Polyak SW, Feng J, Schreiber AW, Kassahn KS, Hahn CN, Mordaunt DA, Fletcher JM, Lipsett J, Bratkovic D, Booker GW, Smith NJ, Scott HS.

NPJ Genom Med. 2019 Nov 14;4:28. doi: 10.1038/s41525-019-0103-x. eCollection 2019.


Author Correction: Puma genomes from North and South America provide insights into the genomic consequences of inbreeding.

Saremi NF, Supple MA, Byrne A, Cahill JA, Coutinho LL, Dalén L, Figueiró HV, Johnson WE, Milne HJ, O'Brien SJ, O'Connell B, Onorato DP, Riley SPD, Sikich JA, Stahler DR, Villela PMS, Vollmers C, Wayne RK, Eizirik E, Corbett-Detig RB, Green RE, Wilmers CC, Shapiro B.

Nat Commun. 2019 Nov 21;10(1):5276. doi: 10.1038/s41467-019-13096-3.


I.CAN: health coaching provides tailored nutrition and physical activity guidance to people diagnosed with cancer in a rural region in West Gippsland, Australia.

Ristevsk E, Trinh T, Vo N, Byrne A, Jamieson P, Greenall A, Barber G, Roman A, Schmidt U.

J Cancer Surviv. 2019 Nov 8. doi: 10.1007/s11764-019-00818-1. [Epub ahead of print]


Puma genomes from North and South America provide insights into the genomic consequences of inbreeding.

Saremi NF, Supple MA, Byrne A, Cahill JA, Coutinho LL, Dalén L, Figueiró HV, Johnson WE, Milne HJ, O'Brien SJ, O'Connell B, Onorato DP, Riley SPD, Sikich JA, Stahler DR, Villela PMS, Vollmers C, Wayne RK, Eizirik E, Corbett-Detig RB, Green RE, Wilmers CC, Shapiro B.

Nat Commun. 2019 Oct 18;10(1):4769. doi: 10.1038/s41467-019-12741-1. Erratum in: Nat Commun. 2019 Nov 21;10(1):5276.


Exploring the views of female genital mutilation survivors, their male partners and healthcare professionals on the timing of deinfibulation surgery and NHS FGM care provision (the FGM Sister Study): protocol for a qualitative study.

Jones L, Danks E, Clarke J, Alidu L, Costello B, Jolly K, Byrne A, Fassam-Wright M, Latthe P, Taylor J.

BMJ Open. 2019 Oct 17;9(10):e034140. doi: 10.1136/bmjopen-2019-034140.


Auditory streaming and bistability paradigm extended to a dynamic environment.

Byrne Á, Rinzel J, Rankin J.

Hear Res. 2019 Nov;383:107807. doi: 10.1016/j.heares.2019.107807. Epub 2019 Oct 5.


Therapeutic Targeting of the Colorectal Tumor Stroma.

Fridman WH, Miller I, Sautès-Fridman C, Byrne AT.

Gastroenterology. 2020 Jan;158(2):303-321. doi: 10.1053/j.gastro.2019.09.045. Epub 2019 Oct 14.


Push and pull factors driving movement in a social mammal: context dependent behavioral plasticity at the landscape scale.

Byrne AW, O'Keeffe J, Buesching CD, Newman C.

Curr Zool. 2019 Oct;65(5):517-525. doi: 10.1093/cz/zoy081. Epub 2018 Nov 28.


Realizing the potential of full-length transcriptome sequencing.

Byrne A, Cole C, Volden R, Vollmers C.

Philos Trans R Soc Lond B Biol Sci. 2019 Nov 25;374(1786):20190097. doi: 10.1098/rstb.2019.0097. Epub 2019 Oct 7.


Dimethylaniline functionalised pyrene fluorophores; dual colour pH switching in solution and self-assembled monolayers.

O'Connor D, Müller C, Sarangi NK, Byrne A, Keyes TE.

Phys Chem Chem Phys. 2019 Oct 28;21(40):22440-22448. doi: 10.1039/c9cp04948g. Epub 2019 Oct 3.


Modelling Forced Vital Capacity in Idiopathic Pulmonary Fibrosis: Optimising Trial Design.

Santermans E, Ford P, Kreuter M, Verbruggen N, Meyvisch P, Wuyts WA, Brown KK, Lederer DJ, Byrne AJ, Molyneaux PL, Sivananthan A, Moor CC, Maher TM, Wijsenbeek M.

Adv Ther. 2019 Nov;36(11):3059-3070. doi: 10.1007/s12325-019-01093-3. Epub 2019 Sep 29.


Interleukin-11 is a therapeutic target in idiopathic pulmonary fibrosis.

Ng B, Dong J, D'Agostino G, Viswanathan S, Widjaja AA, Lim WW, Ko NSJ, Tan J, Chothani SP, Huang B, Xie C, Pua CJ, Chacko AM, Guimarães-Camboa N, Evans SM, Byrne AJ, Maher TM, Liang J, Jiang D, Noble PW, Schafer S, Cook SA.

Sci Transl Med. 2019 Sep 25;11(511). pii: eaaw1237. doi: 10.1126/scitranslmed.aaw1237.


Cryptic diversity of a widespread global pathogen reveals expanded threats to amphibian conservation.

Byrne AQ, Vredenburg VT, Martel A, Pasmans F, Bell RC, Blackburn DC, Bletz MC, Bosch J, Briggs CJ, Brown RM, Catenazzi A, Familiar López M, Figueroa-Valenzuela R, Ghose SL, Jaeger JR, Jani AJ, Jirku M, Knapp RA, Muñoz A, Portik DM, Richards-Zawacki CL, Rockney H, Rovito SM, Stark T, Sulaeman H, Tao NT, Voyles J, Waddle AW, Yuan Z, Rosenblum EB.

Proc Natl Acad Sci U S A. 2019 Oct 8;116(41):20382-20387. doi: 10.1073/pnas.1908289116. Epub 2019 Sep 23.


Neural underpinnings of value-guided choice during auction tasks: An eye-fixation related potentials study.

Tyson-Carr J, Soto V, Kokmotou K, Roberts H, Fallon N, Byrne A, Giesbrecht T, Stancak A.

Neuroimage. 2020 Jan 1;204:116213. doi: 10.1016/j.neuroimage.2019.116213. Epub 2019 Sep 19.


The Vasarhelyi Method of Child Art Psychotherapy in Child and Adolescent Mental Health Services: a stakeholder survey of clinical supervisors.

McGovern M, Byrne A, McCormack M, Mulligan A.

Ir J Psychol Med. 2019 Sep;36(3):169-176. doi: 10.1017/ipm.2016.29. Epub 2016 Sep 22.


Mitochondrial targeted osmium polypyridyl probe shows concentration dependent uptake, localisation and mechanism of cell death.

Gkika KS, Byrne A, Keyes TE.

Dalton Trans. 2019 Dec 3;48(47):17461-17471. doi: 10.1039/c9dt02967b.


Neonicotinoid seed treatments of soybean provide negligible benefits to US farmers.

Mourtzinis S, Krupke CH, Esker PD, Varenhorst A, Arneson NJ, Bradley CA, Byrne AM, Chilvers MI, Giesler LJ, Herbert A, Kandel YR, Kazula MJ, Hunt C, Lindsey LE, Malone S, Mueller DS, Naeve S, Nafziger E, Reisig DD, Ross WJ, Rossman DR, Taylor S, Conley SP.

Sci Rep. 2019 Sep 9;9(1):11207. doi: 10.1038/s41598-019-47442-8.


Optimizing the fold stability of the circularly permuted Trp-cage motif.

Graham KA, Byrne A, Mason M, Andersen NH.

Biopolymers. 2019 Dec;110(12):e23327. doi: 10.1002/bip.23327. Epub 2019 Sep 3.


Cattle movements in Northern Ireland form a robust network: implications for disease management.

Brown E, Marshall AH, Mitchell HJ, Byrne AW.

Prev Vet Med. 2019 Oct 1;170:104740. doi: 10.1016/j.prevetmed.2019.104740. Epub 2019 Jul 31.


Application of multi-criteria decision analysis to assess sampling strategies in eutrophic urbanized waterbodies.

Abbatangelo J, Byrne A, Butler JF, Wilson JM.

Environ Monit Assess. 2019 Aug 23;191(9):589. doi: 10.1007/s10661-019-7765-9.


Interspecific visitation of cattle and badgers to fomites: A transmission risk for bovine tuberculosis?

Campbell EL, Byrne AW, Menzies FD, McBride KR, McCormick CM, Scantlebury M, Reid N.

Ecol Evol. 2019 Jul 9;9(15):8479-8489. doi: 10.1002/ece3.5282. eCollection 2019 Aug.


Routine postoperative radiographs after tibia plateau fixation have minimal impact on patient care.

Jennewine B, Fiorino D, Kew M, Byrne A, Yarboro S.

Injury. 2019 Nov;50(11):2093-2096. doi: 10.1016/j.injury.2019.07.025. Epub 2019 Jul 23.


Depletion of Hemoglobin Transcripts and Long-Read Sequencing Improves the Transcriptome Annotation of the Polar Bear (Ursus maritimus).

Byrne A, Supple MA, Volden R, Laidre KL, Shapiro B, Vollmers C.

Front Genet. 2019 Jul 19;10:643. doi: 10.3389/fgene.2019.00643. eCollection 2019.


Reply to Puxeddu et al.: CD71- Alveolar Macrophages in Idiopathic Pulmonary Fibrosis: A Look beyond the Borders of the Disease.

Byrne A.

Am J Respir Crit Care Med. 2019 Dec 1;200(11):1446-1447. doi: 10.1164/rccm.201907-1347LE. No abstract available.


Identification and epidemiological analysis of Perostrongylus falciformis infestation in Irish badgers.

Oc Byrne J, Byrne AW, Zintl A, Jankowska K, Coulange E, de Waal T, McCarthy G, O'Keeffe J, Hamnes IS, Fogarty U.

Ir Vet J. 2019 Jul 9;72:7. doi: 10.1186/s13620-019-0144-6. eCollection 2019.


Aryl hydrocarbon receptor nuclear translocator-like (ARNTL/BMAL1) is associated with bevacizumab resistance in colorectal cancer via regulation of vascular endothelial growth factor A.

Burgermeister E, Battaglin F, Eladly F, Wu W, Herweck F, Schulte N, Betge J, Härtel N, Kather JN, Weis CA, Gaiser T, Marx A, Weiss C, Hofheinz R, Miller IS, Loupakis F, Lenz HJ, Byrne AT, Ebert MP.

EBioMedicine. 2019 Jul;45:139-154. doi: 10.1016/j.ebiom.2019.07.004. Epub 2019 Jul 9.


Editorial: Bovine Tuberculosis-International Perspectives on Epidemiology and Management.

Byrne AW, Allen AR, O'Brien DJ, Miller MA.

Front Vet Sci. 2019 Jun 25;6:202. doi: 10.3389/fvets.2019.00202. eCollection 2019. No abstract available.


Variation in Mycobacterium bovis genetic richness suggests that inwards cattle movements are a more important source of infection in beef herds than in dairy herds.

Milne MG, Graham J, Allen A, McCormick C, Presho E, Skuce R, Byrne AW.

BMC Microbiol. 2019 Jul 5;19(1):154. doi: 10.1186/s12866-019-1530-7.


Durability of cell line xenograft resection models to interrogate tumor micro-environment targeting agents.

Miller IS, Shiels LP, Conroy E, Connor K, Dicker P, Gallagher WM, Donovan NO, Kerbel RS, Crown J, Byrne AT.

Sci Rep. 2019 Jun 24;9(1):9204. doi: 10.1038/s41598-019-45444-0.


What is the impact of large-scale implementation of stroke Early Supported Discharge? A mixed methods realist evaluation study protocol.

Fisher R, Chouliara N, Byrne A, Lewis S, Langhorne P, Robinson T, Waring J, Geue C, Hoffman A, Paley L, Rudd A, Walker M.

Implement Sci. 2019 Jun 13;14(1):61. doi: 10.1186/s13012-019-0908-0.


Influence of the fixed implant-supported provisional phase on the esthetic final outcome of implant-supported crowns: 3-year results of a randomized controlled clinical trial.

Furze D, Byrne A, Alam S, Brägger U, Wismeijer D, Wittneben JG.

Clin Implant Dent Relat Res. 2019 Aug;21(4):649-655. doi: 10.1111/cid.12796. Epub 2019 Jun 7.


Characteristics of Northern Irish cattle herds without bovine tuberculosis infection.

Milne G, Graham J, Allen AR, Lahuerta-Marin A, McCormick CM, Presho E, Skuce RA, Byrne A.

Vet Rec. 2019 Jun 22;184(25):772. doi: 10.1136/vr.105225. Epub 2019 Jun 6.


The S. Typhi effector StoD is an E3/E4 ubiquitin ligase which binds K48- and K63-linked diubiquitin.

McDowell MA, Byrne AM, Mylona E, Johnson R, Sagfors A, Crepin VF, Lea S, Frankel G.

Life Sci Alliance. 2019 May 29;2(3). pii: e201800272. doi: 10.26508/lsa.201800272. Print 2019 Jun.


Proceedings Paper-Avian Diseases 10th AI Symposium Issue Development and Application of Real-Time PCR Assays for Specific Detection of Contemporary Avian Influenza Virus Subtypes N5, N6, N7, N8, and N9.

James J, Slomka MJ, Reid SM, Thomas SS, Mahmood S, Byrne AMP, Cooper J, Russell C, Mollett BC, Agyeman-Dua E, Essen S, Brown IH, Brookes SM.

Avian Dis. 2019 Mar 1;63(sp1):209-218. doi: 10.1637/11900-051518-Reg.1.


Ducks Are Susceptible to Infection with a Range of Doses of H5N8 Highly Pathogenic Avian Influenza Virus (2016, Clade and Are Largely Resistant to Virus-Specific Mortality, but Efficiently Transmit Infection to Contact Turkeys.

Slomka MJ, Puranik A, Mahmood S, Thomas SS, Seekings AH, Byrne AMP, Núñez A, Bianco C, Mollett BC, Watson S, Brown IH, Brookes SM.

Avian Dis. 2019 Mar 1;63(sp1):172-180. doi: 10.1637/11905-052518-Reg.1. Erratum in: Avian Dis. 2019 Jun;63(2):371.


Qualitative Evaluation of Cancer Survivors' Experiences of Metacognitive Therapy: A New Perspective on Psychotherapy in Cancer Care.

Cherry MG, Salmon P, Byrne A, Ullmer H, Abbey G, Fisher PL.

Front Psychol. 2019 May 1;10:949. doi: 10.3389/fpsyg.2019.00949. eCollection 2019.


Predictors of treatment participation rate of substance use disorders among Whites and African Americans.

Kim M, Byrne AM, Jeon J.

J Ethn Subst Abuse. 2019 May 21:1-14. doi: 10.1080/15332640.2019.1612300. [Epub ahead of print]


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