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matchbox: An open-source tool for patient matching via the Matchmaker Exchange.

Arachchi H, Wojcik MH, Weisburd B, Jacobsen JOB, Valkanas E, Baxter S, Byrne AB, O'Donnell-Luria AH, Haendel M, Smedley D, MacArthur DG, Philippakis AA, Rehm HL.

Hum Mutat. 2018 Sep 21. doi: 10.1002/humu.23655. [Epub ahead of print]


Valgus instability of the elbow: acute and chronic form.

Willemot L, Hendrikx FR, Byrne AM, van Riet RP.

Obere Extrem. 2018;13(3):173-179. doi: 10.1007/s11678-018-0465-1. Epub 2018 May 30. Review.


Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA.

Volden R, Palmer T, Byrne A, Cole C, Schmitz RJ, Green RE, Vollmers C.

Proc Natl Acad Sci U S A. 2018 Sep 10. pii: 201806447. doi: 10.1073/pnas.1806447115. [Epub ahead of print]


Inception of early-life allergen-induced airway hyperresponsiveness is reliant on IL-13+CD4+ T cells.

Saglani S, Gregory LG, Manghera AK, Branchett WJ, Uwadiae F, Entwistle LJ, Oliver RA, Vasiliou JE, Sherburn R, Lui S, Puttur F, Vöhringer D, Walker SA, Buckley J, Grychtol R, Fainardi V, Denney L, Byrne A, von Mutius E, Bush A, Lloyd CM.

Sci Immunol. 2018 Sep 7;3(27). pii: eaan4128. doi: 10.1126/sciimmunol.aan4128.


Publisher Correction: Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis.

Savas P, Virassamy B, Ye C, Salim A, Mintoff CP, Caramia F, Salgado R, Byrne DJ, Teo ZL, Dushyanthen S, Byrne A, Wein L, Luen SJ, Poliness C, Nightingale SS, Skandarajah AS, Gyorki DE, Thornton CM, Beavis PA, Fox SB; Kathleen Cuningham Foundation Consortium for Research into Familial Breast Cancer (kConFab), Darcy PK, Speed TP, Mackay LK, Neeson PJ, Loi S.

Nat Med. 2018 Aug 22. doi: 10.1038/s41591-018-0176-6. [Epub ahead of print]


Spatiotemporal Distribution Pattern of Sclerotinia sclerotiorum Apothecia is Modulated by Canopy Closure and Soil Temperature in an Irrigated Soybean Field.

Fall ML, Willbur JF, Smith DL, Byrne AM, Chilvers MI.

Plant Dis. 2018 Sep;102(9):1794-1802. doi: 10.1094/PDIS-11-17-1821-RE. Epub 2018 Jul 3.


Bayesian latent class estimation of sensitivity and specificity parameters of diagnostic tests for bovine tuberculosis in chronically infected herds in Northern Ireland.

Lahuerta-Marin A, Milne MG, McNair J, Skuce RA, McBride SH, Menzies FD, McDowell SJW, Byrne AW, Handel IG, de C Bronsvoort BM.

Vet J. 2018 Aug;238:15-21. doi: 10.1016/j.tvjl.2018.04.019. Epub 2018 May 1.


Spatial and risk factor analysis of bovine viral diarrhoea (BVD) virus after the first-year compulsory phase of BVD eradication programme in Northern Ireland.

Charoenlarp W, Frankena K, Strain SAJ, Guelbenzu-Gonzalo M, Graham J, Byrne AW.

Prev Vet Med. 2018 Sep 1;157:34-43. doi: 10.1016/j.prevetmed.2018.05.011. Epub 2018 May 19.


Anti-angiogenic drug scheduling optimisation with application to colorectal cancer.

Sturrock M, Miller IS, Kang G, Hannis Arba'ie N, O'Farrell AC, Barat A, Marston G, Coletta PL, Byrne AT, Prehn JH.

Sci Rep. 2018 Jul 25;8(1):11182. doi: 10.1038/s41598-018-29318-5.


The molecular interplay between axon degeneration and regeneration.

Girouard MP, Bueno M, Julian V, Drake S, Byrne AB, Fournier AE.

Dev Neurobiol. 2018 Jul 18. doi: 10.1002/dneu.22627. [Epub ahead of print] Review.


Highly Selective Mitochondrial Targeting by a Ruthenium(II) Peptide Conjugate: Imaging and Photoinduced Damage of Mitochondrial DNA.

Burke CS, Byrne A, Keyes TE.

Angew Chem Int Ed Engl. 2018 Jul 17. doi: 10.1002/anie.201806002. [Epub ahead of print]


Factors associated with referral offer and acceptance following supportive care problem identification in a comprehensive cancer service.

Skaczkowski G, Sanderson P, Shand M, Byrne A, Wilson C.

Eur J Cancer Care (Engl). 2018 Jun 29:e12869. doi: 10.1111/ecc.12869. [Epub ahead of print]


Seasonal variation of Fasciola hepatica antibodies in dairy herds in Northern Ireland measured by bulk tank milk ELISA.

Byrne AW, Graham J, McConville J, Milne G, McDowell S, Hanna REB, Guelbenzu-Gonzalo M.

Parasitol Res. 2018 Sep;117(9):2725-2733. doi: 10.1007/s00436-018-5961-0. Epub 2018 Jun 14.


Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis.

Savas P, Virassamy B, Ye C, Salim A, Mintoff CP, Caramia F, Salgado R, Byrne DJ, Teo ZL, Dushyanthen S, Byrne A, Wein L, Luen SJ, Poliness C, Nightingale SS, Skandarajah AS, Gyorki DE, Thornton CM, Beavis PA, Fox SB; Kathleen Cuningham Foundation Consortium for Research into Familial Breast Cancer (kConFab), Darcy PK, Speed TP, Mackay LK, Neeson PJ, Loi S.

Nat Med. 2018 Jul;24(7):986-993. doi: 10.1038/s41591-018-0078-7. Epub 2018 Jun 25. Erratum in: Nat Med. 2018 Aug 22;:.


Relationships Between Neuronal Oscillatory Amplitude and Dynamic Functional Connectivity.

Tewarie P, Hunt BAE, O'Neill GC, Byrne A, Aquino K, Bauer M, Mullinger KJ, Coombes S, Brookes MJ.

Cereb Cortex. 2018 Jun 12. doi: 10.1093/cercor/bhy136. [Epub ahead of print]


Interrogation of transcriptomic changes associated with drug-induced hepatic sinusoidal dilatation in colorectal cancer.

Jarzabek MA, Proctor WR, Vogt J, Desai R, Dicker P, Cain G, Raja R, Brodbeck J, Stevens D, van der Stok EP, Martens JWM, Verhoef C, Hegde PS, Byrne AT, Tarrant JM.

PLoS One. 2018 Jun 7;13(6):e0198099. doi: 10.1371/journal.pone.0198099. eCollection 2018.


A longitudinal study of muscle strength and function in patients with cancer cachexia.

Gale N, Wasley D, Roberts S, Backx K, Nelson A, van Deursen R, Byrne A.

Support Care Cancer. 2018 Jun 2. doi: 10.1007/s00520-018-4297-8. [Epub ahead of print]


Loss of Chromosome 18q11.2-q12.1 Is Predictive for Survival in Patients With Metastatic Colorectal Cancer Treated With Bevacizumab.

van Dijk E, Biesma HD, Cordes M, Smeets D, Neerincx M, Das S, Eijk PP, Murphy V, Barat A, Bacon O, Prehn JHM, Betge J, Gaiser T, Fender B, Meijer GA, McNamara DA, Klinger R, Koopman M, Ebert MPA, Kay EW, Hennessey BT, Verheul HMW, Gallagher WM, O'Connor DP, Punt CJA, Loupakis F, Lambrechts D, Byrne AT, van Grieken NCT, Ylstra B.

J Clin Oncol. 2018 Jul 10;36(20):2052-2060. doi: 10.1200/JCO.2017.77.1782. Epub 2018 May 24.


Targeting Photoinduced DNA Destruction by Ru(II) Tetraazaphenanthrene in Live Cells by Signal Peptide.

Burke CS, Byrne A, Keyes TE.

J Am Chem Soc. 2018 Jun 6;140(22):6945-6955. doi: 10.1021/jacs.8b02711. Epub 2018 May 21.


Unexpected infection outcomes of China-origin H7N9 low pathogenicity avian influenza virus in turkeys.

Slomka MJ, Seekings AH, Mahmood S, Thomas S, Puranik A, Watson S, Byrne AMP, Hicks D, Nunez A, Brown IH, Brookes SM.

Sci Rep. 2018 May 9;8(1):7322. doi: 10.1038/s41598-018-25062-y.


Roxithromycin monotherapy inducing a partial response in a patient with myeloma: a case report.

Chai KY, Byrne AL, Morison IM.

J Med Case Rep. 2018 May 10;12(1):124. doi: 10.1186/s13256-018-1636-9.


Opening the file drawer: Unexpected insights from a chytrid infection experiment.

Byrne AQ, Poorten TJ, Voyles J, Willis CKR, Rosenblum EB.

PLoS One. 2018 May 9;13(5):e0196851. doi: 10.1371/journal.pone.0196851. eCollection 2018.


Linked genetic variation and not genome structure causes widespread differential expression associated with chromosomal inversions.

Said I, Byrne A, Serrano V, Cardeno C, Vollmers C, Corbett-Detig R.

Proc Natl Acad Sci U S A. 2018 May 22;115(21):5492-5497. doi: 10.1073/pnas.1721275115. Epub 2018 May 7.


Helicobacter cinaedi bacteremia mimicking eosinophilic fasciitis in a patient with X-linked agammaglobulinemia.

Hill A, Byrne A, Bouffard D, Luong ML, Saber M, Chapdelaine H.

JAAD Case Rep. 2018 Mar 31;4(4):327-329. doi: 10.1016/j.jdcr.2017.11.016. eCollection 2018 May. No abstract available.


Interpreting the Cormack and Lehane classification during videolaryngoscopy.

Landucci F, Byrne A, Caldiroli D.

Anaesthesia. 2018 May;73(5):652-653. doi: 10.1111/anae.14294. No abstract available.


Symptom management, nutrition and hydration at end-of-life: a qualitative exploration of patients', carers' and health professionals' experiences and further research questions.

Baillie J, Anagnostou D, Sivell S, Van Godwin J, Byrne A, Nelson A.

BMC Palliat Care. 2018 Apr 16;17(1):60. doi: 10.1186/s12904-018-0314-4.


An observational study of clinical outcomes of everolimus-eluting bioresorbable scaffolds comparing the procedural use of optical coherence tomography against angiography alone.

Hamshere S, Byrne A, Guttmann O, Rees P, Bourantas C, Weerakody R, Wragg A, Knight C, Mathur A, Jones DA.

Coron Artery Dis. 2018 Sep;29(6):482-488. doi: 10.1097/MCA.0000000000000626.


Randomised trial of the comparison of drug-eluting stents in patients with diabetes: OCT DES trial.

Hamshere S, Byrne A, Choudhury T, Gallagher SM, Rathod KS, Lungley J, Knight CJ, Kapur A, Jones DA, Mathur A.

Open Heart. 2018 Apr 5;5(1):e000705. doi: 10.1136/openhrt-2017-000705. eCollection 2018.


The effect of multitasking on the communication skill and clinical skills of medical students.

Woods B, Byrne A, Bodger O.

BMC Med Educ. 2018 Apr 10;18(1):76. doi: 10.1186/s12909-018-1183-5.


Shifts in disease dynamics in a tropical amphibian assemblage are not due to pathogen attenuation.

Voyles J, Woodhams DC, Saenz V, Byrne AQ, Perez R, Rios-Sotelo G, Ryan MJ, Bletz MC, Sobell FA, McLetchie S, Reinert L, Rosenblum EB, Rollins-Smith LA, Ibáñez R, Ray JM, Griffith EJ, Ross H, Richards-Zawacki CL.

Science. 2018 Mar 30;359(6383):1517-1519. doi: 10.1126/science.aao4806.


Neuropsychological Profile of a Girl with Wiskott-Aldrich Syndrome.

Byrne AM, Schechter T, Westmacott R.

Cogn Behav Neurol. 2018 Mar;31(1):13-17. doi: 10.1097/WNN.0000000000000143.


Tn5Prime, a Tn5 based 5' capture method for single cell RNA-seq.

Cole C, Byrne A, Beaudin AE, Forsberg EC, Vollmers C.

Nucleic Acids Res. 2018 Jun 1;46(10):e62. doi: 10.1093/nar/gky182.


Punishment Attacks in Post-Ceasefire Northern Ireland: An Emergency Department Perspective.

McGarry K, Redmill D, Edwards M, Byrne A, Brady A, Taylor M.

Ulster Med J. 2017 May;86(2):90-93. Epub 2017 May 20.


Better than a pound of cure: preventing the development of multidrug-resistant tuberculosis.

Byrne AL, Fox GJ, Marais BJ.

Future Microbiol. 2018 Apr;13:577-588. doi: 10.2217/fmb-2017-0236. Epub 2018 Mar 9.


Trends in Pediatric Complicated Pneumonia in an Ontario Local Health Integration Network.

Haji T, Byrne A, Kovesi T.

Children (Basel). 2018 Mar 3;5(3). pii: E36. doi: 10.3390/children5030036.


Modelling the variation in skin-test tuberculin reactions, post-mortem lesion counts and case pathology in tuberculosis-exposed cattle: Effects of animal characteristics, histories and co-infection.

Byrne AW, Graham J, Brown C, Donaghy A, Guelbenzu-Gonzalo M, McNair J, Skuce RA, Allen A, McDowell SW.

Transbound Emerg Dis. 2018 Jun;65(3):844-858. doi: 10.1111/tbed.12814. Epub 2018 Jan 23.


Predictors of emotional distress a year or more after diagnosis of cancer: A systematic review of the literature.

Cook SA, Salmon P, Hayes G, Byrne A, Fisher PL.

Psychooncology. 2018 Mar;27(3):791-801. doi: 10.1002/pon.4601. Epub 2018 Jan 10. Review.


Impact of Enquiry Based Learning (EBL) on student midwife praxis.

Byrne A, McNeill J, Rogers K, Porter S.

Midwifery. 2018 Mar;58:83-85. doi: 10.1016/j.midw.2017.12.025. Epub 2017 Dec 28.


Feasibility and yield of screening for non-communicable diseases among treated tuberculosis patients in Peru.

Byrne AL, Marais BJ, Mitnick CD, Garden FL, Lecca L, Contreras C, Yauri Y, Garcia F, Marks GB.

Int J Tuberc Lung Dis. 2018 Jan 1;22(1):86-92. doi: 10.5588/ijtld.17.0381.


Bovine tuberculosis visible lesions in cattle culled during herd breakdowns: the effects of individual characteristics, trade movement and co-infection.

Byrne AW, Graham J, Brown C, Donaghy A, Guelbenzu-Gonzalo M, McNair J, Skuce R, Allen A, McDowell S.

BMC Vet Res. 2017 Dec 29;13(1):400. doi: 10.1186/s12917-017-1321-z.


Generation and Stability of the gem-Diol Forms in Imidazole Derivatives Containing Carbonyl Groups. Solid-State NMR and Single-Crystal X-ray Diffraction Studies.

Crespi AF, Byrne AJ, Vega D, Chattah AK, Monti GA, Lázaro-Martínez JM.

J Phys Chem A. 2018 Jan 18;122(2):601-609. doi: 10.1021/acs.jpca.7b12390. Epub 2018 Jan 5.


Comparison of Salmonella enterica Serovars Typhi and Typhimurium Reveals Typhoidal Serovar-Specific Responses to Bile.

Johnson R, Ravenhall M, Pickard D, Dougan G, Byrne A, Frankel G.

Infect Immun. 2018 Feb 20;86(3). pii: e00490-17. doi: 10.1128/IAI.00490-17. Print 2018 Mar.


Optimizing Non-Pharmacologic Management of Hypertriglyceridemia.

Byrne A, Makadia S, Sutherland A, Miller M.

Arch Med Res. 2017 Aug;48(6):483-487. doi: 10.1016/j.arcmed.2017.11.017. Epub 2017 Dec 6. Review.


Patient characteristics and outcome measurement in a low secure forensic hospital.

Longdon L, Edworthy R, Resnick J, Byrne A, Clarke M, Cheung N, Khalifa N.

Crim Behav Ment Health. 2018 Jun;28(3):255-269. doi: 10.1002/cbm.2062. Epub 2017 Dec 7.


Horizontal and vertical distribution of sea lice larvae (Lepeophtheirus salmonis) in and around salmon farms in the Bay of Fundy, Canada.

Nelson EJ, Robinson SMC, Feindel N, Sterling A, Byrne A, Pee Ang K.

J Fish Dis. 2018 Jun;41(6):885-899. doi: 10.1111/jfd.12692. Epub 2017 Nov 21.


Metacognitive Therapy for Emotional Distress in Adult Cancer Survivors: A Case Series.

Fisher PL, Byrne A, Salmon P.

Cognit Ther Res. 2017;41(6):891-901. doi: 10.1007/s10608-017-9862-9. Epub 2017 May 29.


PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models.

Meehan TF, Conte N, Goldstein T, Inghirami G, Murakami MA, Brabetz S, Gu Z, Wiser JA, Dunn P, Begley DA, Krupke DM, Bertotti A, Bruna A, Brush MH, Byrne AT, Caldas C, Christie AL, Clark DA, Dowst H, Dry JR, Doroshow JH, Duchamp O, Evrard YA, Ferretti S, Frese KK, Goodwin NC, Greenawalt D, Haendel MA, Hermans E, Houghton PJ, Jonkers J, Kemper K, Khor TO, Lewis MT, Lloyd KCK, Mason J, Medico E, Neuhauser SB, Olson JM, Peeper DS, Rueda OM, Seong JK, Trusolino L, Vinolo E, Wechsler-Reya RJ, Weinstock DM, Welm A, Weroha SJ, Amant F, Pfister SM, Kool M, Parkinson H, Butte AJ, Bult CJ.

Cancer Res. 2017 Nov 1;77(21):e62-e66. doi: 10.1158/0008-5472.CAN-17-0582.


Characterization of type I interferon responses in dengue and severe dengue in children in Paraguay.

Talarico LB, Byrne AB, Amarilla S, Lovera D, Vázquez C, Chamorro G, Acosta PL, Ferretti A, Caballero MT, Arbo A, Polack FP.

J Clin Virol. 2017 Dec;97:10-17. doi: 10.1016/j.jcv.2017.10.010. Epub 2017 Oct 18.


Microglial-induced Müller cell gliosis is attenuated by progesterone in a mouse model of retinitis pigmentosa.

Roche SL, Ruiz-Lopez AM, Moloney JN, Byrne AM, Cotter TG.

Glia. 2018 Feb;66(2):295-310. doi: 10.1002/glia.23243. Epub 2017 Oct 16.


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