Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 37

1.

Cooperative Intramolecular Hydrogen Bonding Strongly Enforces cis-Peptoid Folding.

Wijaya AW, Nguyen AI, Roe LT, Butterfoss GL, Spencer RK, Li NK, Zuckermann RN.

J Am Chem Soc. 2019 Nov 25. doi: 10.1021/jacs.9b10497. [Epub ahead of print]

PMID:
31765162
2.

Stereochemistry of polypeptoid chain configurations.

Spencer RK, Butterfoss GL, Edison JR, Eastwood JR, Whitelam S, Kirshenbaum K, Zuckermann RN.

Biopolymers. 2019 Jun;110(6):e23266. doi: 10.1002/bip.23266. Epub 2019 Mar 5.

PMID:
30835823
3.

Unconstrained peptoid tetramer exhibits a predominant conformation in aqueous solution.

Roe LT, Pelton JG, Edison JR, Butterfoss GL, Tresca BW, LaFaye BA, Whitelam S, Wemmer DE, Zuckermann RN.

Biopolymers. 2019 Jun;110(6):e23267. doi: 10.1002/bip.23267. Epub 2019 Mar 5.

PMID:
30835821
4.

An adaptive geometric search algorithm for macromolecular scaffold selection.

Jiang T, Renfrew PD, Drew K, Youngs N, Butterfoss GL, Bonneau R, Shasha DN.

Protein Eng Des Sel. 2018 Sep 1;31(9):345-354. doi: 10.1093/protein/gzy028.

5.

Conformations of peptoids in nanosheets result from the interplay of backbone energetics and intermolecular interactions.

Edison JR, Spencer RK, Butterfoss GL, Hudson BC, Hochbaum AI, Paravastu AK, Zuckermann RN, Whitelam S.

Proc Natl Acad Sci U S A. 2018 May 29;115(22):5647-5651. doi: 10.1073/pnas.1800397115. Epub 2018 May 14.

6.

Stabilizing Leaf and Branch Compost Cutinase (LCC) with Glycosylation: Mechanism and Effect on PET Hydrolysis.

Shirke AN, White C, Englaender JA, Zwarycz A, Butterfoss GL, Linhardt RJ, Gross RA.

Biochemistry. 2018 Feb 20;57(7):1190-1200. doi: 10.1021/acs.biochem.7b01189. Epub 2018 Jan 30.

PMID:
29328676
7.

The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization.

Nelson DR, Khraiwesh B, Fu W, Alseekh S, Jaiswal A, Chaiboonchoe A, Hazzouri KM, O'Connor MJ, Butterfoss GL, Drou N, Rowe JD, Harb J, Fernie AR, Gunsalus KC, Salehi-Ashtiani K.

Elife. 2017 Jun 17;6. pii: e25783. doi: 10.7554/eLife.25783.

8.

Engineered Humicola insolens cutinase for efficient cellulose acetate deacetylation.

Shirke AN, Butterfoss GL, Saikia R, Basu A, de Maria L, Svendsen A, Gross RA.

Biotechnol J. 2017 Aug;12(8). doi: 10.1002/biot.201700188. Epub 2017 Jun 1.

PMID:
28488758
9.

Comparative thermal inactivation analysis of Aspergillus oryzae and Thiellavia terrestris cutinase: Role of glycosylation.

Shirke AN, Su A, Jones JA, Butterfoss GL, Koffas MA, Kim JR, Gross RA.

Biotechnol Bioeng. 2017 Jan;114(1):63-73. doi: 10.1002/bit.26052. Epub 2016 Sep 21.

PMID:
27425027
10.

Influence of surface charge, binding site residues and glycosylation on Thielavia terrestris cutinase biochemical characteristics.

Shirke AN, Basore D, Holton S, Su A, Baugh E, Butterfoss GL, Makhatadze G, Bystroff C, Gross RA.

Appl Microbiol Biotechnol. 2016 May;100(10):4435-46. doi: 10.1007/s00253-015-7254-1. Epub 2016 Jan 13.

11.

Toward rational thermostabilization of Aspergillus oryzae cutinase: Insights into catalytic and structural stability.

Shirke AN, Basore D, Butterfoss GL, Bonneau R, Bystroff C, Gross RA.

Proteins. 2016 Jan;84(1):60-72. doi: 10.1002/prot.24955. Epub 2015 Nov 26.

12.

Peptoid nanosheets exhibit a new secondary-structure motif.

Mannige RV, Haxton TK, Proulx C, Robertson EJ, Battigelli A, Butterfoss GL, Zuckermann RN, Whitelam S.

Nature. 2015 Oct 15;526(7573):415-20. doi: 10.1038/nature15363. Epub 2015 Oct 7.

PMID:
26444241
13.

Conformational preferences of peptide-peptoid hybrid oligomers.

Butterfoss GL, Drew K, Renfrew PD, Kirshenbaum K, Bonneau R.

Biopolymers. 2014 Sep;102(5):369-78. doi: 10.1002/bip.22516.

PMID:
24919990
14.

A rotamer library to enable modeling and design of peptoid foldamers.

Renfrew PD, Craven TW, Butterfoss GL, Kirshenbaum K, Bonneau R.

J Am Chem Soc. 2014 Jun 18;136(24):8772-82. doi: 10.1021/ja503776z. Epub 2014 Jun 9.

15.

Adding diverse noncanonical backbones to rosetta: enabling peptidomimetic design.

Drew K, Renfrew PD, Craven TW, Butterfoss GL, Chou FC, Lyskov S, Bullock BN, Watkins A, Labonte JW, Pacella M, Kilambi KP, Leaver-Fay A, Kuhlman B, Gray JJ, Bradley P, Kirshenbaum K, Arora PS, Das R, Bonneau R.

PLoS One. 2013 Jul 15;8(7):e67051. doi: 10.1371/journal.pone.0067051. Print 2013.

16.

Enzyme-triggered hydrogelation via self-assembly of alternating peptides.

Qin X, Xie W, Tian S, Cai J, Yuan H, Yu Z, Butterfoss GL, Khuong AC, Gross RA.

Chem Commun (Camb). 2013 May 25;49(42):4839-41. doi: 10.1039/c3cc41794h.

PMID:
23598349
17.

De novo structure prediction and experimental characterization of folded peptoid oligomers.

Butterfoss GL, Yoo B, Jaworski JN, Chorny I, Dill KA, Zuckermann RN, Bonneau R, Kirshenbaum K, Voelz VA.

Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14320-5. doi: 10.1073/pnas.1209945109. Epub 2012 Aug 20.

18.

N-Naphthyl peptoid foldamers exhibiting atropisomerism.

Paul B, Butterfoss GL, Boswell MG, Huang ML, Bonneau R, Wolf C, Kirshenbaum K.

Org Lett. 2012 Feb 3;14(3):926-9. doi: 10.1021/ol203452f. Epub 2012 Jan 24.

PMID:
22272975
19.

Oligo(N-alkoxy glycines): trans substantiating peptoid conformations.

Jordan PA, Paul B, Butterfoss GL, Renfrew PD, Bonneau R, Kirshenbaum K.

Biopolymers. 2011;96(5):617-26.

PMID:
22180909
20.

Rational design of temperature-sensitive alleles using computational structure prediction.

Poultney CS, Butterfoss GL, Gutwein MR, Drew K, Gresham D, Gunsalus KC, Shasha DE, Bonneau R.

PLoS One. 2011;6(9):e23947. doi: 10.1371/journal.pone.0023947. Epub 2011 Sep 2.

21.

The Proteome Folding Project: proteome-scale prediction of structure and function.

Drew K, Winters P, Butterfoss GL, Berstis V, Uplinger K, Armstrong J, Riffle M, Schweighofer E, Bovermann B, Goodlett DR, Davis TN, Shasha D, Malmström L, Bonneau R.

Genome Res. 2011 Nov;21(11):1981-94. doi: 10.1101/gr.121475.111. Epub 2011 Aug 8.

22.

Peptoid atropisomers.

Paul B, Butterfoss GL, Boswell MG, Renfrew PD, Yeung FG, Shah NH, Wolf C, Bonneau R, Kirshenbaum K.

J Am Chem Soc. 2011 Jul 20;133(28):10910-9. doi: 10.1021/ja2028684. Epub 2011 Jun 22.

PMID:
21634437
23.

Computational design of the sequence and structure of a protein-binding peptide.

Sammond DW, Bosch DE, Butterfoss GL, Purbeck C, Machius M, Siderovski DP, Kuhlman B.

J Am Chem Soc. 2011 Mar 30;133(12):4190-2. doi: 10.1021/ja110296z. Epub 2011 Mar 9.

24.

Tryptophanyl-tRNA synthetase Urzyme: a model to recapitulate molecular evolution and investigate intramolecular complementation.

Pham Y, Kuhlman B, Butterfoss GL, Hu H, Weinreb V, Carter CW Jr.

J Biol Chem. 2010 Dec 3;285(49):38590-601. doi: 10.1074/jbc.M110.136911. Epub 2010 Sep 23.

25.

Conformational dependence of 13C shielding and coupling constants for methionine methyl groups.

Butterfoss GL, DeRose EF, Gabel SA, Perera L, Krahn JM, Mueller GA, Zheng X, London RE.

J Biomol NMR. 2010 Sep;48(1):31-47. doi: 10.1007/s10858-010-9436-6. Epub 2010 Aug 24.

26.

Computational design of a PAK1 binding protein.

Jha RK, Leaver-Fay A, Yin S, Wu Y, Butterfoss GL, Szyperski T, Dokholyan NV, Kuhlman B.

J Mol Biol. 2010 Jul 9;400(2):257-70. doi: 10.1016/j.jmb.2010.05.006. Epub 2010 May 10.

27.

A preliminary survey of the peptoid folding landscape.

Butterfoss GL, Renfrew PD, Kuhlman B, Kirshenbaum K, Bonneau R.

J Am Chem Soc. 2009 Nov 25;131(46):16798-807. doi: 10.1021/ja905267k.

PMID:
19919145
28.

Structural and functional studies of Aspergillus oryzae cutinase: enhanced thermostability and hydrolytic activity of synthetic ester and polyester degradation.

Liu Z, Gosser Y, Baker PJ, Ravee Y, Lu Z, Alemu G, Li H, Butterfoss GL, Kong XP, Gross R, Montclare JK.

J Am Chem Soc. 2009 Nov 4;131(43):15711-6. doi: 10.1021/ja9046697.

29.

Oligo(N-aryl glycines): a new twist on structured peptoids.

Shah NH, Butterfoss GL, Nguyen K, Yoo B, Bonneau R, Rabenstein DL, Kirshenbaum K.

J Am Chem Soc. 2008 Dec 10;130(49):16622-32. doi: 10.1021/ja804580n.

PMID:
19049458
30.

Using quantum mechanics to improve estimates of amino acid side chain rotamer energies.

Renfrew PD, Butterfoss GL, Kuhlman B.

Proteins. 2008 Jun;71(4):1637-46.

31.

A minimal TrpRS catalytic domain supports sense/antisense ancestry of class I and II aminoacyl-tRNA synthetases.

Pham Y, Li L, Kim A, Erdogan O, Weinreb V, Butterfoss GL, Kuhlman B, Carter CW Jr.

Mol Cell. 2007 Mar 23;25(6):851-62.

32.

Maintaining solvent accessible surface area under rotamer substitution for protein design.

Leaver-Fay A, Butterfoss GL, Snoeyink J, Kuhlman B.

J Comput Chem. 2007 Jun;28(8):1336-41.

PMID:
17285560
33.

Computer-based design of novel protein structures.

Butterfoss GL, Kuhlman B.

Annu Rev Biophys Biomol Struct. 2006;35:49-65. Review.

PMID:
16689627
34.

Protein imperfections: separating intrinsic from extrinsic variation of torsion angles.

Butterfoss GL, Richardson JS, Hermans J.

Acta Crystallogr D Biol Crystallogr. 2005 Jan;61(Pt 1):88-98. Epub 2004 Dec 17.

PMID:
15608380
35.

Boltzmann-type distribution of side-chain conformation in proteins.

Butterfoss GL, Hermans J.

Protein Sci. 2003 Dec;12(12):2719-31.

36.
37.

Interfacial activation of triglyceride lipase from Thermomyces (Humicola) lanuginosa: kinetic parameters and a basis for control of the lid.

Berg OG, Cajal Y, Butterfoss GL, Grey RL, Alsina MA, Yu BZ, Jain MK.

Biochemistry. 1998 May 12;37(19):6615-27.

PMID:
9578545

Supplemental Content

Loading ...
Support Center