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PU.1 controls fibroblast polarization and tissue fibrosis.

Wohlfahrt T, Rauber S, Uebe S, Luber M, Soare A, Ekici A, Weber S, Matei AE, Chen CW, Maier C, Karouzakis E, Kiener HP, Pachera E, Dees C, Beyer C, Daniel C, Gelse K, Kremer AE, Naschberger E, Stürzl M, Butter F, Sticherling M, Finotto S, Kreuter A, Kaplan MH, Jüngel A, Gay S, Nutt SL, Boykin DW, Poon GMK, Distler O, Schett G, Distler JHW, Ramming A.

Nature. 2019 Feb;566(7744):344-349. doi: 10.1038/s41586-019-0896-x. Epub 2019 Jan 30.


ZBTB10 binds the telomeric variant repeat TTGGGG and interacts with TRF2.

Bluhm A, Viceconte N, Li F, Rane G, Ritz S, Wang S, Levin M, Shi Y, Kappei D, Butter F.

Nucleic Acids Res. 2019 Feb 28;47(4):1896-1907. doi: 10.1093/nar/gky1289.


Human platelet lysate as validated replacement for animal serum to assess chemosensitivity.

Pons M, Nagel G, Zeyn Y, Beyer M, Laguna T, Brachetti T, Sellmer A, Mahboobi S, Conradi R, Butter F, Krämer OH.

ALTEX. 2018 Dec 14. doi: 10.14573/altex.1809211. [Epub ahead of print]


A DNA methylation reader complex that enhances gene transcription.

Harris CJ, Scheibe M, Wongpalee SP, Liu W, Cornett EM, Vaughan RM, Li X, Chen W, Xue Y, Zhong Z, Yen L, Barshop WD, Rayatpisheh S, Gallego-Bartolome J, Groth M, Wang Z, Wohlschlegel JA, Du J, Rothbart SB, Butter F, Jacobsen SE.

Science. 2018 Dec 7;362(6419):1182-1186. doi: 10.1126/science.aar7854.


Quantifying post-transcriptional regulation in the development of Drosophila melanogaster.

Becker K, Bluhm A, Casas-Vila N, Dinges N, Dejung M, Sayols S, Kreutz C, Roignant JY, Butter F, Legewie S.

Nat Commun. 2018 Nov 26;9(1):4970. doi: 10.1038/s41467-018-07455-9.


Trypanosomes can initiate nuclear export co-transcriptionally.

Goos C, Dejung M, Wehman AM, M-Natus E, Schmidt J, Sunter J, Engstler M, Butter F, Kramer S.

Nucleic Acids Res. 2019 Jan 10;47(1):266-282. doi: 10.1093/nar/gky1136.


Genome-wide Rules of Nucleosome Phasing in Drosophila.

Baldi S, Jain DS, Harpprecht L, Zabel A, Scheibe M, Butter F, Straub T, Becker PB.

Mol Cell. 2018 Nov 15;72(4):661-672.e4. doi: 10.1016/j.molcel.2018.09.032. Epub 2018 Nov 1.


Tdrd6a Regulates the Aggregation of Buc into Functional Subcellular Compartments that Drive Germ Cell Specification.

Roovers EF, Kaaij LJT, Redl S, Bronkhorst AW, Wiebrands K, de Jesus Domingues AM, Huang HY, Han CT, Riemer S, Dosch R, Salvenmoser W, Grün D, Butter F, van Oudenaarden A, Ketting RF.

Dev Cell. 2018 Aug 6;46(3):285-301.e9. doi: 10.1016/j.devcel.2018.07.009.


The histone deacetylases HDAC1 and HDAC2 are required for the growth and survival of renal carcinoma cells.

Kiweler N, Brill B, Wirth M, Breuksch I, Laguna T, Dietrich C, Strand S, Schneider G, Groner B, Butter F, Heinzel T, Brenner W, Krämer OH.

Arch Toxicol. 2018 Jul;92(7):2227-2243. doi: 10.1007/s00204-018-2229-5. Epub 2018 May 29.


GTSF-1 is required for formation of a functional RNA-dependent RNA Polymerase complex in Caenorhabditis elegans.

Almeida MV, Dietz S, Redl S, Karaulanov E, Hildebrandt A, Renz C, Ulrich HD, König J, Butter F, Ketting RF.

EMBO J. 2018 Jun 15;37(12). pii: e99325. doi: 10.15252/embj.201899325. Epub 2018 May 16.


A Vastly Increased Chemical Variety of RNA Modifications Containing a Thioacetal Structure.

Dal Magro C, Keller P, Kotter A, Werner S, Duarte V, Marchand V, Ignarski M, Freiwald A, Müller RU, Dieterich C, Motorin Y, Butter F, Atta M, Helm M.

Angew Chem Int Ed Engl. 2018 Jun 25;57(26):7893-7897. doi: 10.1002/anie.201713188. Epub 2018 Apr 27.


The Linker Histone GH1-HMGA1 Is Involved in Telomere Stability and DNA Damage Repair.

Charbonnel C, Rymarenko O, Da Ines O, Benyahya F, White CI, Butter F, Amiard S.

Plant Physiol. 2018 May;177(1):311-327. doi: 10.1104/pp.17.01789. Epub 2018 Apr 5.


Loss of Wilms tumor 1 protein is a marker for apoptosis in response to replicative stress in leukemic cells.

Pons M, Reichardt CM, Hennig D, Nathan A, Kiweler N, Stocking C, Wichmann C, Christmann M, Butter F, Reichardt S, Schneider G, Heinzel T, Englert C, Hartkamp J, Krämer OH, Mahendrarajah N.

Arch Toxicol. 2018 Jun;92(6):2119-2135. doi: 10.1007/s00204-018-2202-3. Epub 2018 Mar 27.


TelAP1 links telomere complexes with developmental expression site silencing in African trypanosomes.

Reis H, Schwebs M, Dietz S, Janzen CJ, Butter F.

Nucleic Acids Res. 2018 Apr 6;46(6):2820-2833. doi: 10.1093/nar/gky028.


The long noncoding RNA lncR492 inhibits neural differentiation of murine embryonic stem cells.

Winzi M, Casas Vila N, Paszkowski-Rogacz M, Ding L, Noack S, Theis M, Butter F, Buchholz F.

PLoS One. 2018 Jan 24;13(1):e0191682. doi: 10.1371/journal.pone.0191682. eCollection 2018.


The FOXP2-Driven Network in Developmental Disorders and Neurodegeneration.

Oswald F, Klöble P, Ruland A, Rosenkranz D, Hinz B, Butter F, Ramljak S, Zechner U, Herlyn H.

Front Cell Neurosci. 2017 Jul 26;11:212. doi: 10.3389/fncel.2017.00212. eCollection 2017.


Analysis of RNA-protein interactions in vertebrate embryos using UV crosslinking approaches.

Despic V, Dejung M, Butter F, Neugebauer KM.

Methods. 2017 Aug 15;126:44-53. doi: 10.1016/j.ymeth.2017.07.013. Epub 2017 Jul 19.


The nuclear proteome of Trypanosoma brucei.

Goos C, Dejung M, Janzen CJ, Butter F, Kramer S.

PLoS One. 2017 Jul 20;12(7):e0181884. doi: 10.1371/journal.pone.0181884. eCollection 2017.


ZBTB48 is both a vertebrate telomere-binding protein and a transcriptional activator.

Jahn A, Rane G, Paszkowski-Rogacz M, Sayols S, Bluhm A, Han CT, Draškovič I, Londoño-Vallejo JA, Kumar AP, Buchholz F, Butter F, Kappei D.

EMBO Rep. 2017 Jun;18(6):929-946. doi: 10.15252/embr.201744095. Epub 2017 May 12.


Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition.

Despic V, Dejung M, Gu M, Krishnan J, Zhang J, Herzel L, Straube K, Gerstein MB, Butter F, Neugebauer KM.

Genome Res. 2017 Jul;27(7):1184-1194. doi: 10.1101/gr.215954.116. Epub 2017 Apr 5.


The developmental proteome of Drosophila melanogaster.

Casas-Vila N, Bluhm A, Sayols S, Dinges N, Dejung M, Altenhein T, Kappei D, Altenhein B, Roignant JY, Butter F.

Genome Res. 2017 Jul;27(7):1273-1285. doi: 10.1101/gr.213694.116. Epub 2017 Apr 5.


Phylointeractomics reconstructs functional evolution of protein binding.

Kappei D, Scheibe M, Paszkowski-Rogacz M, Bluhm A, Gossmann TI, Dietz S, Dejung M, Herlyn H, Buchholz F, Mann M, Butter F.

Nat Commun. 2017 Feb 8;8:14334. doi: 10.1038/ncomms14334.


Characterization of genetic loss-of-function of Fus in zebrafish.

Lebedeva S, de Jesus Domingues AM, Butter F, Ketting RF.

RNA Biol. 2017 Jan 2;14(1):29-35. doi: 10.1080/15476286.2016.1256532. Epub 2016 Nov 29.


Two flagellar BAR domain proteins in Trypanosoma brucei with stage-specific regulation.

Cicova Z, Dejung M, Skalicky T, Eisenhuth N, Hanselmann S, Morriswood B, Figueiredo LM, Butter F, Janzen CJ.

Sci Rep. 2016 Oct 25;6:35826. doi: 10.1038/srep35826.


tRNA anticodon loop modifications ensure protein homeostasis and cell morphogenesis in yeast.

Klassen R, Ciftci A, Funk J, Bruch A, Butter F, Schaffrath R.

Nucleic Acids Res. 2016 Dec 15;44(22):10946-10959. Epub 2016 Aug 5.


Quantitative Proteomics Uncovers Novel Factors Involved in Developmental Differentiation of Trypanosoma brucei.

Dejung M, Subota I, Bucerius F, Dindar G, Freiwald A, Engstler M, Boshart M, Butter F, Janzen CJ.

PLoS Pathog. 2016 Feb 24;12(2):e1005439. doi: 10.1371/journal.ppat.1005439. eCollection 2016 Feb.


Reader interactome of epigenetic histone marks in birds.

Bluhm A, Casas-Vila N, Scheibe M, Butter F.

Proteomics. 2016 Feb;16(3):427-36. doi: 10.1002/pmic.201500217.


Identification of TTAGGG-binding proteins in Neurospora crassa, a fungus with vertebrate-like telomere repeats.

Casas-Vila N, Scheibe M, Freiwald A, Kappei D, Butter F.

BMC Genomics. 2015 Nov 17;16:965. doi: 10.1186/s12864-015-2158-0.


Piwi proteins and piRNAs in mammalian oocytes and early embryos.

Roovers EF, Rosenkranz D, Mahdipour M, Han CT, He N, Chuva de Sousa Lopes SM, van der Westerlaken LA, Zischler H, Butter F, Roelen BA, Ketting RF.

Cell Rep. 2015 Mar 31;10(12):2069-82. doi: 10.1016/j.celrep.2015.02.062. Epub 2015 Mar 26.


The coilin interactome identifies hundreds of small noncoding RNAs that traffic through Cajal bodies.

Machyna M, Kehr S, Straube K, Kappei D, Buchholz F, Butter F, Ule J, Hertel J, Stadler PF, Neugebauer KM.

Mol Cell. 2014 Nov 6;56(3):389-99. doi: 10.1016/j.molcel.2014.10.004. Epub 2014 Nov 6.


Deep proteomic evaluation of primary and cell line motoneuron disease models delineates major differences in neuronal characteristics.

Hornburg D, Drepper C, Butter F, Meissner F, Sendtner M, Mann M.

Mol Cell Proteomics. 2014 Dec;13(12):3410-20. doi: 10.1074/mcp.M113.037291. Epub 2014 Sep 5.


The ETS family member GABPα modulates androgen receptor signalling and mediates an aggressive phenotype in prostate cancer.

Sharma NL, Massie CE, Butter F, Mann M, Bon H, Ramos-Montoya A, Menon S, Stark R, Lamb AD, Scott HE, Warren AY, Neal DE, Mills IG.

Nucleic Acids Res. 2014 Jun;42(10):6256-69. doi: 10.1093/nar/gku281. Epub 2014 Apr 21.


On the extent and role of the small proteome in the parasitic eukaryote Trypanosoma brucei.

Ericson M, Janes MA, Butter F, Mann M, Ullu E, Tschudi C.

BMC Biol. 2014 Feb 19;12:14. doi: 10.1186/1741-7007-12-14.


A DNA-centric protein interaction map of ultraconserved elements reveals contribution of transcription factor binding hubs to conservation.

Viturawong T, Meissner F, Butter F, Mann M.

Cell Rep. 2013 Oct 31;5(2):531-45. doi: 10.1016/j.celrep.2013.09.022. Epub 2013 Oct 17.


Quantitative interaction screen of telomeric repeat-containing RNA reveals novel TERRA regulators.

Scheibe M, Arnoult N, Kappei D, Buchholz F, Decottignies A, Butter F, Mann M.

Genome Res. 2013 Dec;23(12):2149-57. doi: 10.1101/gr.151878.112. Epub 2013 Aug 6.


Alleles of a polymorphic ETV6 binding site in DCDC2 confer risk of reading and language impairment.

Powers NR, Eicher JD, Butter F, Kong Y, Miller LL, Ring SM, Mann M, Gruen JR.

Am J Hum Genet. 2013 Jul 11;93(1):19-28. doi: 10.1016/j.ajhg.2013.05.008. Epub 2013 Jun 6. Erratum in: Am J Hum Genet. 2014 May 1;94(5):798.


HOT1 is a mammalian direct telomere repeat-binding protein contributing to telomerase recruitment.

Kappei D, Butter F, Benda C, Scheibe M, Draškovič I, Stevense M, Novo CL, Basquin C, Araki M, Araki K, Krastev DB, Kittler R, Jessberger R, Londoño-Vallejo JA, Mann M, Buchholz F.

EMBO J. 2013 Jun 12;32(12):1681-701. doi: 10.1038/emboj.2013.105. Epub 2013 May 17.


Quantitative proteomic analysis reveals concurrent RNA-protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae.

Klass DM, Scheibe M, Butter F, Hogan GJ, Mann M, Brown PO.

Genome Res. 2013 Jun;23(6):1028-38. doi: 10.1101/gr.153031.112. Epub 2013 May 1.


Comparative proteomics of two life cycle stages of stable isotope-labeled Trypanosoma brucei reveals novel components of the parasite's host adaptation machinery.

Butter F, Bucerius F, Michel M, Cicova Z, Mann M, Janzen CJ.

Mol Cell Proteomics. 2013 Jan;12(1):172-9. doi: 10.1074/mcp.M112.019224. Epub 2012 Oct 22.


Proteome-wide analysis of disease-associated SNPs that show allele-specific transcription factor binding.

Butter F, Davison L, Viturawong T, Scheibe M, Vermeulen M, Todd JA, Mann M.

PLoS Genet. 2012 Sep;8(9):e1002982. doi: 10.1371/journal.pgen.1002982. Epub 2012 Sep 27.


Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions.

Scheibe M, Butter F, Hafner M, Tuschl T, Mann M.

Nucleic Acids Res. 2012 Oct;40(19):9897-902. doi: 10.1093/nar/gks746. Epub 2012 Aug 9.


TNF receptor 1 genetic risk mirrors outcome of anti-TNF therapy in multiple sclerosis.

Gregory AP, Dendrou CA, Attfield KE, Haghikia A, Xifara DK, Butter F, Poschmann G, Kaur G, Lambert L, Leach OA, Prömel S, Punwani D, Felce JH, Davis SJ, Gold R, Nielsen FC, Siegel RM, Mann M, Bell JI, McVean G, Fugger L.

Nature. 2012 Aug 23;488(7412):508-511. doi: 10.1038/nature11307.


Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers.

Vermeulen M, Eberl HC, Matarese F, Marks H, Denissov S, Butter F, Lee KK, Olsen JV, Hyman AA, Stunnenberg HG, Mann M.

Cell. 2010 Sep 17;142(6):967-80. doi: 10.1016/j.cell.2010.08.020.


A domesticated transposon mediates the effects of a single-nucleotide polymorphism responsible for enhanced muscle growth.

Butter F, Kappei D, Buchholz F, Vermeulen M, Mann M.

EMBO Rep. 2010 Apr;11(4):305-11. doi: 10.1038/embor.2010.6. Epub 2010 Feb 5.


Unbiased RNA-protein interaction screen by quantitative proteomics.

Butter F, Scheibe M, Mörl M, Mann M.

Proc Natl Acad Sci U S A. 2009 Jun 30;106(26):10626-31. doi: 10.1073/pnas.0812099106. Epub 2009 Jun 16.


A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements.

Mittler G, Butter F, Mann M.

Genome Res. 2009 Feb;19(2):284-93. doi: 10.1101/gr.081711.108. Epub 2008 Nov 17.


A comparative analysis of two conserved motifs in bacterial poly(A) polymerase and CCA-adding enzyme.

Just A, Butter F, Trenkmann M, Heitkam T, Mörl M, Betat H.

Nucleic Acids Res. 2008 Sep;36(16):5212-20. doi: 10.1093/nar/gkn494. Epub 2008 Aug 5.


Diagnosis of vesicoureteric reflux with low-dose contrast-enhanced harmonic ultrasound imaging.

Darge K, Moeller RT, Trusen A, Butter F, Gordjani N, Riedmiller H.

Pediatr Radiol. 2005 Jan;35(1):73-8. Epub 2004 Sep 22.


Time course of 23Na signal intensity after myocardial infarction in humans.

Sandstede JJ, Hillenbrand H, Beer M, Pabst T, Butter F, Machann W, Bauer W, Hahn D, Neubauer S.

Magn Reson Med. 2004 Sep;52(3):545-51.


Assessment of myocardial infarction in humans with (23)Na MR imaging: comparison with cine MR imaging and delayed contrast enhancement.

Sandstede JJ, Pabst T, Beer M, Lipke C, Bäurle K, Butter F, Harre K, Kenn W, Voelker W, Neubauer S, Hahn D.

Radiology. 2001 Oct;221(1):222-8.


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